KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:04:16 2014 Check: 00 .. Name: ENSBTAP00000018337/1-1588 Len: 2023 Check: 9533 Weight: 1.00 Name: ENSTTRP00000015087/1-1557 Len: 2023 Check: 7223 Weight: 1.00 Name: bmy_13781T0/1-1766 Len: 2023 Check: 5522 Weight: 1.00 Name: BACU011539/1-1546 Len: 2023 Check: 5885 Weight: 1.00 // 1 50 ENSBTAP00000018337/1-1588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015087/1-1557 ---------- ---------- ---------- ---------- ---------- bmy_13781T0/1-1766 RLSAGRVLAR NPGGARGGSH NRAANGAAHP VPNVRQPPGQ GTPGLELGDR BACU011539/1-1546 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000018337/1-1588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015087/1-1557 ---------- ---------- ---------- ---------- ---------- bmy_13781T0/1-1766 RSDGGGLTAE ARRCPDPGFP GAKSGKPEGQ ALPLRPPGGL QTATAARRGG BACU011539/1-1546 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000018337/1-1588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015087/1-1557 ---------- ---------- ---------- ---------- ---------- bmy_13781T0/1-1766 TQGRGCPGAS QGPGKAPEAR QAGLRRRRTM PPAMAAPSVS LWELADLAIG BACU011539/1-1546 ---------- ---------- ---------M PPTTAAPSVS LRELADLAIG 151 200 ENSBTAP00000018337/1-1588 ---------- ---------- ---------- ---------S SIF------- ENSTTRP00000015087/1-1557 ---------- ---------- ---------- ---------- ---------- bmy_13781T0/1-1766 TPEVGAVNFT ALHTLIVAML KNLNLQDTRI DFPSPMLEQS RLFESPRVSS BACU011539/1-1546 TPEVGAVNFT ALHTLIVAML KNLNLQDTRI DFPSPMLEQS RLFESPRLSS 201 250 ENSBTAP00000018337/1-1588 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015087/1-1557 ---------- ---------- ---------- ---------- ---------- bmy_13781T0/1-1766 SRAQPQALES QVKDLGGQVQ DLSLQLKTMG SQVQAIVAHV QHFPSQAGGL BACU011539/1-1546 GRAQPQALES QVKDLGGQVQ DLSLQLTTMG SQVQAIVAHV EHFPSQAGGL 251 300 ENSBTAP00000018337/1-1588 ---------- ---------- ---------- ELFFQHLLQR IEELERIIRE ENSTTRP00000015087/1-1557 ---------- ---------- ------RKDG EPVPKKLLQR VDELEKLIRE bmy_13781T0/1-1766 DARDWLEVKD LPLLMQGKAQ VGSTKVRKDG EPVPQNLLQR IDELEKLIRE BACU011539/1-1546 DARDWLEVKD LPLLMQGKAQ VGSTVVRKDG ELVPQKLLRR IDELEKLIRE 301 350 ENSBTAP00000018337/1-1588 KDEVL----- ---------- ---------- ---------- ---------- ENSTTRP00000015087/1-1557 RDKFL----- ---------- ---------- ---------- ---------- bmy_13781T0/1-1766 RDEFLVISAS SVGRGPQGPQ GLSIQGPHGT GNQPLRTHWL LGQWLFLGAL BACU011539/1-1546 RDEFL----- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000018337/1-1588 -----ELLNR KLSVMPSSEE ATMVTWEELE QAITDGWKGS QTISESTTGL ENSTTRP00000015087/1-1557 -----EIVSW KLRAIPDAEE ATMVTWEELE QAVTGGRMAS QMVSESSTRL bmy_13781T0/1-1766 DPPNPETMSW KLSVMPGAEE ATMVTWEELE QAITDGWKAS QMVSESSTGL BACU011539/1-1546 ---------- ---------- ---------- ---------- --VSESSTGL 401 450 ENSBTAP00000018337/1-1588 QRRKRQSSIT SSDLIASGVS TKYPSVDQAI DSA-GFITDK TFSGTSGIGY ENSTTRP00000015087/1-1557 PRRKGQGSMT SNDKIPSGAS TKHPSIDEAI ASASGFGADE T-SGTSGIGY bmy_13781T0/1-1766 PRRKGQGSIT SNDKIPSGAS TKHPSIDEAI ESASGFSTDK TFSGTSGIGY BACU011539/1-1546 PRRKGQGSIT SNDKIPSGAS TKHPSTDEAI ESASGFSTDK TFSGTSGIGY 451 500 ENSBTAP00000018337/1-1588 PFDGPSGRER SRVSSATGFP AREQHLRARD EAGLARPHPP SMSQLRAEPD ENSTTRP00000015087/1-1557 SSEGVTGREQ SKGASATGFP GREEHSRARE EAGLTKHRP- ---QLREESD bmy_13781T0/1-1766 SSEGVTGRER SKGASATGFP GREQHSRARE EAGLTKPRP- ---QLRAESD BACU011539/1-1546 SSEGVTGRER SKGASATGFP GREQRSRARE EAGLTKPHP- ---QLRAESD 501 550 ENSBTAP00000018337/1-1588 RHRSREQHSS GHLRRDERDT HLGPVYQDVS ---LPRDRHT QVSPDQHRGV ENSTTRP00000015087/1-1557 RRRAGEQHGL AHLRRDERDA HLGPVYQDVS SAT------- ----DQHGGV bmy_13781T0/1-1766 RRRARERHGL AHLRRDERDT HLGPVYQDVS SATLPRDRHG HVSPDQHGGV BACU011539/1-1546 RRRAREQHGL AHLRRDERDA HLGPVYQDVS SATLPRDRHG HVSPDQHGGV 551 600 ENSBTAP00000018337/1-1588 FTSQGHLYAR PDQYGFGSFD SDQLDLLYPS AYVPGMVPIS VDQVGVMLPG ENSTTRP00000015087/1-1557 HVSQGQIYAR PDQHGLGPLG MSQPASLQPS TYAHGAVPLA VGQLGVTPPG bmy_13781T0/1-1766 HISQGQIYAR PDQHGLGPLG MDQPALLQPS TYVRGVVPLT VGQLGVMPPG BACU011539/1-1546 HISQGQIYAW PDQHGLGPLG MDQPALLQPS TYVRGVVPLT VGQLGVMPPG 601 650 ENSBTAP00000018337/1-1588 MDEQELVLAG MAQSDAVPPV VPGRDQPGSE QPSTDQPGTV PLSTYQ---- ENSTTRP00000015087/1-1557 MDEQELVLAG MAQSDAVPPL VSGRDQQGLG LPGTDQPGMV PLGTYQHGVI bmy_13781T0/1-1766 MDEQELVLAG MAQSDAVPPL VSGRDQQGLE LPSTDQPGMV PLSAYPHGVI BACU011539/1-1546 MDEQELVLAG MAQSDAVPPL VSGRDQQGLE LPSTDQPGMV PLSAHQHDVI 651 700 ENSBTAP00000018337/1-1588 LP-------- --GMDESGVG PLGMYQSGVE PLSVDQHGFV IYPM------ ENSTTRP00000015087/1-1557 LPGIDQRGIK QAGMDESGVG PLGTDQHGLV PLGVDQHGFV IFGMDQQGLL bmy_13781T0/1-1766 LPGIDQHGIK QAGMDESGMG PLGTDQHGLV PLGVDQHGFV IFSTDQQGLL BACU011539/1-1546 LPGIDQHGIK QAGMDESGMG PLGTDQHGLV PLGGDQHGFV IFRTDPQGLL 701 750 ENSBTAP00000018337/1-1588 ---------D QQVFVQPSLG TSGFIQPGTE QHEMIQPGAG QAGVVQPGVS ENSTTRP00000015087/1-1557 SPGLMQVAAD QQGFVQPSLG TSGFIQPGTE QHETIQPSAG QPALVQPSIG bmy_13781T0/1-1766 SPGLMQVAAD QQGFVQPGLG ISGFIQPGTE QHDMIQPSAG QPALVQPSIG BACU011539/1-1546 SPGLMQVAAD QQGFVQPGLG ISGFIQPGTE QHDIIQPSAG QPALVQPSIG 751 800 ENSBTAP00000018337/1-1588 QPGVVQPGAG QAGVVQPGVS QPGVVQPG-A GQAGVVQPGA -GQAGVVQPG ENSTTRP00000015087/1-1557 QPGLVQPGAG QPGLVQPGAG QPGLVQPG-A GQPGLVQPGA AGQPGLVQPG bmy_13781T0/1-1766 QP-------- ---------- ---------- ---------- ----GLVQPG BACU011539/1-1546 QPGLVQPGAG -----QPGAG QPVLVQPGAA GQPDLVQPGA AGQPGLVQPG 801 850 ENSBTAP00000018337/1-1588 AGQAGIMQPR IYPRGLVQPE MYPRGLVQPG IGHPGFMQPR MYPRGLVPPR ENSTTRP00000015087/1-1557 AGQP------ ---------- ----GLVQPG AGQP------ ---------- bmy_13781T0/1-1766 TGQP------ ---------- ----GLVQPG AGQP------ ---------- BACU011539/1-1546 AGQP------ ---------- ----GLVQPG AGQP------ ---------- 851 900 ENSBTAP00000018337/1-1588 MYHQGLVQPG AGQPGMVQPD IGHPGLVQS- GAAQAGAVQP GAGQAGAVQP ENSTTRP00000015087/1-1557 ----GLVQPG AGQPASVQPG AGQPGLVQPG GAGQPGLVQP GAGQPGLVQP bmy_13781T0/1-1766 ----GLVQPG AGQPGLVQPD A--------- ---------- -AGQPGLVQP BACU011539/1-1546 ----GLVQPG AGQPGLVQPG AGQPGLVQP- GAGQPGLVQP GAGQPGLVQP 901 950 ENSBTAP00000018337/1-1588 G-AGQAGAVQ PGAVQAGAVQ PGVGQPGAVQ PGVGQAGAVQ PGVGQPGAVQ ENSTTRP00000015087/1-1557 GAAGQPGLVQ PGAGQPASVQ PGAGHPGLVQ PGMYQQGLVQ PSAGQPGLVQ bmy_13781T0/1-1766 GAAGQPGLVQ PGLVX----- -GLVQPGLVQ PG-------- -AAGQPGLV- BACU011539/1-1546 G-AGQPGLVQ PGLVQPGLVQ PGLVQPGLVQ PGLVQPGLVQ PGLVQPGLV- 951 1000 ENSBTAP00000018337/1-1588 PGAA-QAGAV QPGAV-QAGA VQPGAAQAGV VQPG-VGQPG AVQPGAAQAG ENSTTRP00000015087/1-1557 PGAAGQPGLV QPGAAGQPGL VQPGAGQPGL VQPGAAGQPG LVQP------ bmy_13781T0/1-1766 -----QPGLV ------QPGL VQPGAGQPAS VQPG-AGHPG L--------- BACU011539/1-1546 -----QPGLV QPGAAGQPGL VQPGAGQPAS VQPG-AGHPG LVQPGMYQRG 1001 1050 ENSBTAP00000018337/1-1588 AVQPGAAQAG VVQPGVGQAG MVQPGAGQPG LVQPQVDQYG LVQPDRGQHG ENSTTRP00000015087/1-1557 ----GAGQPG LVQPGAGQPG LVQPGTGQPG LVQPGAGQPG LVQPDTGSHG bmy_13781T0/1-1766 ---------- -VQPGMYQRG FVQPGMYQRG FVQPSAGQPG LVQPGAGPHG BACU011539/1-1546 LVPSGARHPG FVQPGMYQRG FVQPGMYQRG FVQPGAGQPG LVQPGAGPHG 1051 1100 ENSBTAP00000018337/1-1588 FFQPNISMPG LVPPGAYPPG LVQTGAYPGG LIQPGAYPHG FMQPGADQQG ENSTTRP00000015087/1-1557 FFQPGVSMPG LVPPGTYPPG LVQPGGYPHG LVQSGAYPRG FMQPHRS-RG bmy_13781T0/1-1766 FFQPGVSMPG LVPPGTYPPG LVQPGA---- ------YPRG FMQPRADQRG BACU011539/1-1546 FFQPGVSTPG LIPPGTYPPG LVQPGA---- ------YPRG FMQPRADQRG 1101 1150 ENSBTAP00000018337/1-1588 LVQPVIDPRW GRQSGTGRSI IPPGTELLGL PTYRANSQSF TSPRPYQQGV ENSTTRP00000015087/1-1557 LVQPVIDQHW LRQSGTDQGL IPPGTELHGF PTYHADPRSF ISPRPYQHGV bmy_13781T0/1-1766 LVQPVIDQHW LRQSGTDRGL IPPGTELHGF PTYHADPRSF ISPRPYQHGV BACU011539/1-1546 LVQPVIDQHW LRQSGTDRGL IPPGPELHGF PTYHADPRSF ISPRPYQHGV 1151 1200 ENSBTAP00000018337/1-1588 AAPGRDQYGR VSSLLASQGL TPSGTDREGL VLREMYRQGL L-----QRGP ENSTTRP00000015087/1-1557 APPGRDQYGR VSPLVASQGL ASPGIDREGL VPRETYQQGL MRPGPDQRGP bmy_13781T0/1-1766 APPGRDQYGR VSPLVASQGL ASPGIDREGL VPRETYQQGL MRPGPDQHGP BACU011539/1-1546 APPGRDQYGR GSPLVASQGL ASPGIDREGL VPRETYQQGL MRPGPDQHGP 1201 1250 ENSBTAP00000018337/1-1588 TPLSTAVGSA PQDQQHLETS EPEQHDQAVP DSIPDSQGLM YGGPGYQGVD ENSTTRP00000015087/1-1557 KPLRTGVGSA RQDQQHLEAP EPEQHDRA-- -FCPDSH--- --GPGYQGVD bmy_13781T0/1-1766 KPLRTSVRSA RQDQQHLETP EPEQHDRA-- HSVPDSH--- --GPGYQDVD BACU011539/1-1546 KPLRMNVGSA RQDQQHLET- -PEQHDRA-- HSVPDSH--- --GPGYQDVD 1251 1300 ENSBTAP00000018337/1-1588 RQVQVGVGPK ELYVLRQPGV SVQTSPSQEA PFPRSTHSLD SLNRGSSERS ENSTTRP00000015087/1-1557 QYVEVGLDPN EIRGSVRPGV SVQTSPSQDA PFLRSTRSLD YLYRGLSERS bmy_13781T0/1-1766 QYVEVGLDPN EIRDSIRPGV SVQTSPSQDA PFLRSTHSLD CLYRGSSERS BACU011539/1-1546 QYVE------ ---------- ---------- ---------- ---------- 1301 1350 ENSBTAP00000018337/1-1588 DTQSERRESL DKLAPSFPIA VETFRMMGEI IALYMELKEN IKDLDEEQAG ENSTTRP00000015087/1-1557 DVQGEKRDSL DKLAPSFPMA VETFRLMGEL IGLYLELKEN VKDLDDEQAG bmy_13781T0/1-1766 DVQGEKRDSL DKLAPSFPMA VETFRLMGEL IGLYVELKEN IKDLDDEQAG BACU011539/1-1546 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSBTAP00000018337/1-1588 QTDLEKIQYL LALMVKKSIP PDLQEQLKTL KALAKEIRQQ QAKMEKMSKI ENSTTRP00000015087/1-1557 QTDLEKIQYL LTLMVKKSIP ADLQEQLKTL KALTKEVRQE KAKLEKVNRI bmy_13781T0/1-1766 QTDLEKIQYL LALMVKKSIP TDLQEQLKTL KALTKE---- ---LEKMNRI BACU011539/1-1546 ---------- ---------- ---------- ---------- ---LEKMNRI 1401 1450 ENSBTAP00000018337/1-1588 LEDHGEKEIG KEEKGGPMNL QLGILRVTMA DIEKELGELR ESQEKGKVSM ENSTTRP00000015087/1-1557 LEGEEEQETG KEVNAGQLSL QLGVL-VTVA DIEKELAELR ESQERGKVSM bmy_13781T0/1-1766 LEGEGEQETG KEVKAGQLSL QLGILRVTVA DIEKELAELR ESQERGK--- BACU011539/1-1546 LEGEGEQETG KEVKAGQLSL QLGILRVTVA DIEKELAELR ESQERGKVSM 1451 1500 ENSBTAP00000018337/1-1588 EHSVSEASIY LQDQLDKLRT IIENMLASSS TLLSMSLNMA PHKTLTTLAP ENSTTRP00000015087/1-1557 EHSVSEASLY LQDQLDKLRT IIENMMASSS TLLSMSMSAA PHKLPTTLAP bmy_13781T0/1-1766 ---------- ----LDKLRT IIENMLASSS TLLSMSMSAA PHKLLTTLAP BACU011539/1-1546 ERSVSEASLY LQDQLDKLRT IIENMLASSS TLLSMSMSVA PHKLLTTLAP 1501 1550 ENSBTAP00000018337/1-1588 SQIDPEATCP ACSLDLSHQV SMLVQRYEQL QNMVSNLAAS RPSKKAKLQS ENSTTRP00000015087/1-1557 SQIDPAATCP ACSLDLSHRV STLVQRYEQL QDMVSSLAAS RPSKKAKQQS bmy_13781T0/1-1766 GQIDPAATCP ACSLDLSHQV STLVQRYEQL QDMVSNLAAS RPSKKAKLQS BACU011539/1-1546 GQIDPAATCP ACSLDLSHQV STLVQRYEQL QDMVSNLAAS RPSRKAKLQS 1551 1600 ENSBTAP00000018337/1-1588 QDEELLGHVQ SAILQVQGDC EKLNVTTSNL IKDHRQKQKD IDVLYQGLEK ENSTTRP00000015087/1-1557 QDEELLGRVQ SAILQVQGDC EKLSIITGNL IEDHRQRQKD IEVLYQGLEK bmy_13781T0/1-1766 QDEELLGRVQ SAILQVQGDC EKLSITTGSL IEDHRRKQKD IEVLYQGLEK BACU011539/1-1546 QDEELLGRVQ SAILQVQGDC EKLSITTGSL IEDHRRKQKD IEVLYQGLEK 1601 1650 ENSBTAP00000018337/1-1588 LEKEKADREH LEMEIDVKAD KSALAAKVSR VQFDATTEQL NHMMQELVAK ENSTTRP00000015087/1-1557 LQKEKANREH LELEINVKAD KSALAAKVSR VQFDATTEQL NHMMQELVAK bmy_13781T0/1-1766 LEKEKANREH LEMEINVKAD KSALAAKVSR VQFDATTEQL NRMMRELVAK BACU011539/1-1546 LEKEKANREH LEMEINVKAD KSALAA---- ---------- ---------- 1651 1700 ENSBTAP00000018337/1-1588 MTGQEQDWQK MLDKLLVEMD NKLDRLELDP VKQSLEDRWK SLRQQLKERS ENSTTRP00000015087/1-1557 MSGREGDWQK MLDRLLVQMD NKLDRLELDP VKQSLEDGWK SLRLQLKERS bmy_13781T0/1-1766 MSGQEQDWQE MLDKLLAEMD GKLDRLELDP VKQSLEDRWK SLRLQLKERS BACU011539/1-1546 ---------- ---------- -KLDRLELDP VKQSLEDRWK SLRLQLKERS 1701 1750 ENSBTAP00000018337/1-1588 PLYQADEAAA MRRQLLAHFH CLSCDRPLET PVTGQVIPMT PVGPCLPGHR ENSTTRP00000015087/1-1557 PLYQVDEAAA MRRQLLAXXX XXXXXXXXXX XXXXXVIPLT PVGPGLPGHR bmy_13781T0/1-1766 PLYQADEAAA MRR------- ---------- -----VIPLT PVGPGLPGHR BACU011539/1-1546 PLYQADEAAA MRRQLLAHFH CLSCDRPLET PVTGEVIPLT PVGPGLPGHQ 1751 1800 ENSBTAP00000018337/1-1588 SVRPYTVFEL EQVRQQSRNL KLGSSGFPRG DLGQVERSVG RLRTMHSKML ENSTTRP00000015087/1-1557 SIRPYTVFEL EQVRQQSRNL QLGSAAFPWG NLGQTERSVG RLRSLHSKML bmy_13781T0/1-1766 SSRPYTVFEL EQVRQQSRNL KLGSAAFPRG NLGQTERSVG RLRSMHSKML BACU011539/1-1546 STRPYTVFEL EQVRQQSRNL KLGSAAFPRG NLGQTERSVG RLRSMHSKML 1801 1850 ENSBTAP00000018337/1-1588 LDIEKVQIHF GGSIKASSQM IRELLQAQCL SSPCYKRLPD MADYSYSSAP ENSTTRP00000015087/1-1557 MDIEKVQIHF GGSVKASSQM IRELLRSQCL GCPCYRRXXX XXXXXXXXXX bmy_13781T0/1-1766 MDIEKVQIHF GGSVTASSQM IRELLHTQCL SCPCYRRLPD AADHTYPRAP BACU011539/1-1546 MDIEKVQIHF GGSVKASSQM IRELLHSQCL SCPCYRRLPD AADHTYPRAA 1851 1900 ENSBTAP00000018337/1-1588 RPCGGSHTLT YPYRRIRLQH LSQGLYPTEE IQIAMKHDEV DILGLDGHIY ENSTTRP00000015087/1-1557 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13781T0/1-1766 RRCGGSHTLT YPYRRNRLQH LAQGLYPTEE IQIARKHDEV DILGLDGHIY BACU011539/1-1546 RRCGGSHTLT CPSRRSRLQH LAQGLYPTEE IQIARKHDEV DILGLDGHIY 1901 1950 ENSBTAP00000018337/1-1588 KGRMETRLPD LLNKDNAGMK HKNKQSRPHG HRQQSLSNSG QLPLRPQSAQ ENSTTRP00000015087/1-1557 XXXXXXXXXX XXXXXXSGIK HKAKQSRPHV HRQQSLSDSG QLPSRSQSAQ bmy_13781T0/1-1766 KGRMDTRLPD ILNKDNSGIK HKAKQSQPHV HRQRSLSDST QLPSRPQSAQ BACU011539/1-1546 KGRMDTRLPD ILNKDNSGIK HKAKQSQPHV HRQRSLSDST QLPSRPQSAQ 1951 2000 ENSBTAP00000018337/1-1588 TLAASDSGS- ---------- ---------- ---------- ---------- ENSTTRP00000015087/1-1557 MLAGNDSERQ ---------- ---------- ---------- ---------- bmy_13781T0/1-1766 MLAGNNSASL VLAQEGGVRG RGRCR----- ---------- ---------- BACU011539/1-1546 MLAGNNSGPS LQRKDRPIST EGRLSQPNTA HLPSEMADLP AGLEMHMDVP 2001 2050 ENSBTAP00000018337/1-1588 ---------- ---------- --- ENSTTRP00000015087/1-1557 ---------- ---------- --- bmy_13781T0/1-1766 ---------- SGGTPLAA-- --- BACU011539/1-1546 PGEGLEEPPG GRGPPLLTEQ SYK