KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:16 2014 Check: 00 .. Name: bmy_16902T0/1-381 Len: 543 Check: 7816 Weight: 1.00 Name: ENSP00000405890/1-430 Len: 543 Check: 3198 Weight: 1.00 Name: ENSTTRP00000005756/1-430 Len: 543 Check: 3198 Weight: 1.00 Name: ENSBTAP00000018349/1-430 Len: 543 Check: 3198 Weight: 1.00 Name: BACU014433/1-348 Len: 543 Check: 7396 Weight: 1.00 // 1 50 bmy_16902T0/1-381 ---------- ---------- ---------- ---------- ---------- ENSP00000405890/1-430 MDEQPRLMHS HAGVGMAGHP GLSQHLQDGA GGTEGEGGRK QDIGDILQQI ENSTTRP00000005756/1-430 MDEQPRLMHS HAGVGMAGHP GLSQHLQDGA GGTEGEGGRK QDIGDILQQI ENSBTAP00000018349/1-430 MDEQPRLMHS HAGVGMAGHP GLSQHLQDGA GGTEGEGGRK QDIGDILQQI BACU014433/1-348 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_16902T0/1-381 ---------- ---------- ---------- -----MSVIL PF-------- ENSP00000405890/1-430 MTITDQSLDE AQARKHALNC HRMKPALFNV LCEIKEKTVL SIRGAQEEEP ENSTTRP00000005756/1-430 MTITDQSLDE AQARKHALNC HRMKPALFNV LCEIKEKTVL SIRGAQEEEP ENSBTAP00000018349/1-430 MTITDQSLDE AQARKHALNC HRMKPALFNV LCEIKEKTVL SIRGAQEEEP BACU014433/1-348 ---------- ---------- ---------- --MPIITSVL SIRGAQEEEP 101 150 bmy_16902T0/1-381 ---------- ---------- ---------- ---------- ---------- ENSP00000405890/1-430 TDPQLMRLDN MLLAEGVAGP EKGGGSAAAA AAAAASGGAG SDNSVEHSDY ENSTTRP00000005756/1-430 TDPQLMRLDN MLLAEGVAGP EKGGGSAAAA AAAAASGGAG SDNSVEHSDY ENSBTAP00000018349/1-430 TDPQLMRLDN MLLAEGVAGP EKGGGSAAAA AAAAASGGAG SDNSVEHSDY BACU014433/1-348 TDPQLMRLDN MLLAEGVAGP EKGGGSAAAA AAAAASGGAG SDNSVEHSDY 151 200 bmy_16902T0/1-381 ---------- ---------Q ACNEFTTHVM NLLREQSRTR PISPKEIERM ENSP00000405890/1-430 RAKLSQIRQI YHTELEKYEQ ACNEFTTHVM NLLREQSRTR PISPKEIERM ENSTTRP00000005756/1-430 RAKLSQIRQI YHTELEKYEQ ACNEFTTHVM NLLREQSRTR PISPKEIERM ENSBTAP00000018349/1-430 RAKLSQIRQI YHTELEKYEQ ACNEFTTHVM NLLREQSRTR PISPKEIERM BACU014433/1-348 RAKLSQIRQI YHTELEKYEQ ACNEFTTHVM NLLREQSRTR PISPKEIERM 201 250 bmy_16902T0/1-381 VSIIHRKFSS IQMQLKQSTC EAVMILRSRF LDARSMVWRN SSSDFLEDEL ENSP00000405890/1-430 VSIIHRKFSS IQMQLKQSTC EAVMILRSRF LDA------- ---------- ENSTTRP00000005756/1-430 VSIIHRKFSS IQMQLKQSTC EAVMILRSRF LDA------- ---------- ENSBTAP00000018349/1-430 VSIIHRKFSS IQMQLKQSTC EAVMILRSRF LDA------- ---------- BACU014433/1-348 VSIIHRKFSS IQMQLKQSTC EAVMILRSRF LDA------- ---------- 251 300 bmy_16902T0/1-381 NSKKRRKRRN FNKQATEILN EYFYSHLSNP YPSEEAKEEL AKKCGITVSQ ENSP00000405890/1-430 ----RRKRRN FNKQATEILN EYFYSHLSNP YPSEEAKEEL AKKCGITVSQ ENSTTRP00000005756/1-430 ----RRKRRN FNKQATEILN EYFYSHLSNP YPSEEAKEEL AKKCGITVSQ ENSBTAP00000018349/1-430 ----RRKRRN FNKQATEILN EYFYSHLSNP YPSEEAKEEL AKKCGITVSQ BACU014433/1-348 ----RRKRRN FNKQATEILN EYFYSHLSNP YPSEEAKEEL AKKCGITVSQ 301 350 bmy_16902T0/1-381 VSNWFGNKRI RYKKNIGKFQ EEANIYAAKT AVTATNVSAH GSQANSPSTP ENSP00000405890/1-430 VSNWFGNKRI RYKKNIGKFQ EEANIYAAKT AVTATNVSAH GSQANSPSTP ENSTTRP00000005756/1-430 VSNWFGNKRI RYKKNIGKFQ EEANIYAAKT AVTATNVSAH GSQANSPSTP ENSBTAP00000018349/1-430 VSNWFGNKRI RYKKNIGKFQ EEANIYAAKT AVTATNVSAH GSQANSPSTP BACU014433/1-348 VSNWFGNKRI RYKKNIGKFQ EEANIYAAKT AVTATNVSAH GSQANSPSTP 351 400 bmy_16902T0/1-381 NSAGSSSSFN MSNSGDLFMS VQSLNGDSYQ GAQVGANVQS QVGTQPMCRQ ENSP00000405890/1-430 NSAGSSSSFN MSNSGDLFMS VQSLNGDSYQ GAQVGANVQS Q--------- ENSTTRP00000005756/1-430 NSAGSSSSFN MSNSGDLFMS VQSLNGDSYQ GAQVGANVQS Q--------- ENSBTAP00000018349/1-430 NSAGSSSSFN MSNSGDLFMS VQSLNGDSYQ GAQVGANVQS Q--------- BACU014433/1-348 NSAGSSSSFN MSNSGDLFMS VQSLNGDSYQ GAQVGANVQS Q--------- 401 450 bmy_16902T0/1-381 VNALASKSPQ SDWHLLLLSR ERDGQTERDV ETKPYQQPNR IKDNHCRGES ENSP00000405890/1-430 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005756/1-430 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018349/1-430 ---------- ---------- ---------- ---------- ---------- BACU014433/1-348 ---------- ---------- ---------- ---------- ---------- 451 500 bmy_16902T0/1-381 RPHFVNAFGS GLSVTLGRQE SGKHRVDTLR HVISQTGGYS DGLAASQMYS ENSP00000405890/1-430 ---------- ---------- -----VDTLR HVISQTGGYS DGLAASQMYS ENSTTRP00000005756/1-430 ---------- ---------- -----VDTLR HVISQTGGYS DGLAASQMYS ENSBTAP00000018349/1-430 ---------- ---------- -----VDTLR HVISQTGGYS DGLAASQMYS BACU014433/1-348 ---------- ---------- -----VDTLR HVISQTGGYS DGLAASQMYS 501 550 bmy_16902T0/1-381 PQGISMCSQL VAFGYLLVLQ PGTSEQPQSV GCQVKVLKGT EDE ENSP00000405890/1-430 PQGISANG-- ---GWQDATT PSSVTSPTEG PGSVHSDTSN --- ENSTTRP00000005756/1-430 PQGISANG-- ---GWQDATT PSSVTSPTEG PGSVHSDTSN --- ENSBTAP00000018349/1-430 PQGISANG-- ---GWQDATT PSSVTSPTEG PGSVHSDTSN --- BACU014433/1-348 PQGISANG-- ---GWQDATT PSSVTSPTEG PGSVHSDTSN ---