KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:20 2014 Check: 00 .. Name: ENSP00000439672/1-694 Len: 700 Check: 8250 Weight: 1.00 Name: ENSBTAP00000018363/1-687 Len: 700 Check: 3392 Weight: 1.00 Name: ENSTTRP00000015518/1-694 Len: 700 Check: 7729 Weight: 1.00 Name: bmy_16465T0/1-649 Len: 700 Check: 4710 Weight: 1.00 Name: BACU020434/1-690 Len: 700 Check: 4507 Weight: 1.00 // 1 50 ENSP00000439672/1-694 --MQPAIQVW FGEDLPLSPR SPLTPRHGPG LANVCQYDEW IAVRHEATLL ENSBTAP00000018363/1-687 WTLIPFPQVW FGEDLPLSPR SPLTPRHGPG LADVCQYDEW IAVRHEATLL ENSTTRP00000015518/1-694 --MLPAIQVW FGEDLPLSPR SPLTPRHGPG LADVCQYDEW IAVRHEATLL bmy_16465T0/1-649 --------VW FGEDLPLSPR SPLTPRHGP- ---------- ---------- BACU020434/1-690 --------VW FGEDLPLSPR SPLTPRHGPG LADVCQYDEW IAVRHEATLL 51 100 ENSP00000439672/1-694 PMQEDLSIWL SGLLGIKVKA EKLLEELDNG VLLCQLIDVL QNMVKTCNSE ENSBTAP00000018363/1-687 PMQEDLSIWL NGLLGIEVKA ERLLEELDNG VLLCQLIDVL QNMVKTCNSE ENSTTRP00000015518/1-694 PMQEDLSIWL SGLLGIEVKA ERLLEELDNG VLLCQLIDVL QNTVKTCNSE bmy_16465T0/1-649 ---------- ----GIEVKA ERLLEELDNG VLLCQLIDVL QNXVKTCNSE BACU020434/1-690 PMQEDLSIWL SGLLGIEVKA ERLLEELDNG VLLCQLIDVL QNMVKTCNSE 101 150 ENSP00000439672/1-694 ESGNFPMRKV PCKKDAASGS FFARDNTANF LHWCRDIGVD ETYLFESEGL ENSBTAP00000018363/1-687 EPVNFPMRKV PCKKDAASGS FFARDNTANF LHWCRHIGVD ETYLFESEGL ENSTTRP00000015518/1-694 EPVNFPMRKV PCKKDAASGS FFARDNTANF LHWCRHIGVD ETYLFESEGL bmy_16465T0/1-649 EPVNFPMRKV PCKKDAASGS FFARDNTANF LHWCRHIGVD ETYLFESEGL BACU020434/1-690 EPVNFPMRKV PCRKDAASGS FFARDNTANF LHWCRHVGVD ETYLFESEGL 151 200 ENSP00000439672/1-694 VLHKDPRQVY LCLLEIGRIV SRYGVEPPVL VKLEKEIELE ETLLNTSGPE ENSBTAP00000018363/1-687 VLHKDPRQVY LCLLEIGRIV SRYGVEPPVL VKLEKEIELE ETLLNTSGPE ENSTTRP00000015518/1-694 VLHKDPRQVY LCLLEIGRIV SSYGVEPPVL VKFEKEIELE ETLLNTSGAE bmy_16465T0/1-649 VLHKDPRQVY LCLLEIGRIV SRYGVEPPVL VKFEKEIELE ETLLNTSGPE BACU020434/1-690 VLHKDPRQVY LCLLEIGRIV SRYGVEPPVL VKFEKEIELE ETLLNTSGPE 201 250 ENSP00000439672/1-694 DSISIPKSCC RHEELHEAVK HIAEDPPCSC SHRFSIEYLS EGRYRLGDKI ENSBTAP00000018363/1-687 DSISIPKSCC QHEELHEAVK HIAEDPPCSC SHRFSIEYLS EGRYRLGDKI ENSTTRP00000015518/1-694 DSISIPKSCC QHEELHEAVK HIAEDPPCSC SHRFSIEYLS EGRYRLGDKI bmy_16465T0/1-649 DSISIPKSCC QHEELHEAVK HIAEDPPCSC SHRFSIEYLS EGRYRLGDKI BACU020434/1-690 DSISIPKSCC QHEELHEAVK HIAEDPPCSC SHRFSIEYLS EGRYRLGDKI 251 300 ENSP00000439672/1-694 LFIR--MLHG KHVMVRVGGG WDTLQGFLLK YDPCRILQFA TLEQKILAFQ ENSBTAP00000018363/1-687 LFIRGKMLHG KHVMVRVGGG WDTLQGFLLK YDPCRILQFA TLEQKILAFQ ENSTTRP00000015518/1-694 LFIR--MLHG KHVMVRVGGG WDTLQGFLLK YDPCRILQFA TLEQKILAFQ bmy_16465T0/1-649 LFIR--MLHG KHVMVRVGGG WDTLQGFLLK YDPCRILQFA TLEQKILAFQ BACU020434/1-690 LFIR--MLHG KHVMVRVGGG WDTLQGFLLK YDPCRILQFA TLEQKILAFQ 301 350 ENSP00000439672/1-694 KGVSNESVPD SPARTPQPPE MNPLSAVNMF QKQNSKPSVP VSIPKSKEKQ ENSBTAP00000018363/1-687 KGVSIESVPD SPARTPQPPE MNPLSAVSMF QKQNSKLGTP VGIPRGKEKQ ENSTTRP00000015518/1-694 KGVSNESVPD SSARAPQPPE MNPLSAVSMF QKQNSKPGTP VGIPRSKEKQ bmy_16465T0/1-649 KGVSNESVPD SSARAPQPPE MNPLSAVSMF QKQNSKPGTP VGIPRSKEKQ BACU020434/1-690 KGVSNESVPD SSARAAQPPE MNPLSAVSMF QKQNSKPGTP VGIPRSKEKQ 351 400 ENSP00000439672/1-694 GRPPGALVPA SSLKGGNLGS MSVRSKLPNS PAASSHPKLK SSKGITKKPQ ENSBTAP00000018363/1-687 VHLPAALPSA SSLKGGNLAP RSVRSKLANS PAASSHLKLM SSKGITKKPQ ENSTTRP00000015518/1-694 VRLPGVSPPA SSLKGGNLAC GSVRSKFPNS PAVSSHLKLR SSKDVTKKPQ bmy_16465T0/1-649 VRLPGVLPPA SSLKGGSLAC GSVRSKFPNS PAASSHLKLR SSKGVAKKPQ BACU020434/1-690 VRLPGVLPPA SSLKGGSLAC GSVRSKFPNS PAASSHLNLT SSKGVAKKPQ 401 450 ENSP00000439672/1-694 APSNNASSSL ASLNPVGKNT SSPALPRTAP CISESPRKCI SSPNTPKAKV ENSBTAP00000018363/1-687 APSNSASSSH ASLNPV---- ---AFSRAAP CVSESLRKGI SSPSTPKTKR ENSTTRP00000015518/1-694 PPSNDASSAS ASLNPVGKST FSPALLRTAP CVSESLRKCI SSPSTPKAKL bmy_16465T0/1-649 APSNDASSSS ASLNPVSKST FSPALLRTAP CVSESLRKCI SSPSTPKAKL BACU020434/1-690 SPSNDASSSS ASLNPAGKST FSPALLRTAP CVSESLRKCI PSPSTPKAKL 451 500 ENSP00000439672/1-694 IPAQNSADLP ESTLLPNKCS GKTQPKYLKH NHISSRDNAV SHLAAHSNSS ENSBTAP00000018363/1-687 VPAQKSRDVP ESTILPNKCS GKTEPKHLKH NHVPSRDHAV SPSATHLNSS ENSTTRP00000015518/1-694 IPARKSRDVP ESTLLPNKCS GKIEPKHLKH HHVSSRDYAV SHSAARLNSS bmy_16465T0/1-649 IPAQKSRDVP ESTLLPNKCS GKIEPKHLKH HHVSSRDYAV SHSATHLNSS BACU020434/1-690 IPAQKSRDVP ESTLLPNKCS GKIEPKHLKH HHASSRDYAV SHSATHLNSS 501 550 ENSP00000439672/1-694 SKCPKLPKAN IPVRPKP--S FQSSAKMTKT SSKTIATGLG TQSQPSDGAP ENSBTAP00000018363/1-687 SKCPKLPKAH LHVRPNPS-S FQSPAKVTTT SSKTVIRSLE TRAQPHGRAP ENSTTRP00000015518/1-694 SKCPKPPKAN LHVRPNPSPS FQSPAKVTTS SSKTITTGLR TQSQPRVGAP bmy_16465T0/1-649 SKCPKPPKAN LHLKPNPSPS FQSPAKVTTS SSKTITTGLR TQSQPRVGAL BACU020434/1-690 SKCPKPPKAN LHLRPNPSPS FQSPAKVTTS SSKPITTGLR TQSQPRVGAL 551 600 ENSP00000439672/1-694 QAKPVPAQKL KSALNLNQPV SVSSVSPVKA TQKSKDKNIV SATKKQPQNK ENSBTAP00000018363/1-687 Q-----AQKP KSALNLNQPL PISSVAPTKA AQKLKDKNMV SVAKKQPQNK ENSTTRP00000015518/1-694 QAGAMPAQKL KSALNLNQPL SVSSVAPAKA AEKLKD-NMV SVAKKQAQSK bmy_16465T0/1-649 QAGAMPAQKL KSALNLNQPL SVTSVAPAKA AEKSKDKNMV SVAKKQPQNK BACU020434/1-690 QAGAMPAQKL KSALNVNQPL SVTSVAPAKA AEKSKDKNMV SVAKKQPQNK 601 650 ENSP00000439672/1-694 SAFQKTGPSS LKSPGRTPLS IVSLPQSSTK TQTAPKSAQT VAKSQHSTKG ENSBTAP00000018363/1-687 STSQKTGTSA SRSPGRTPLS IVSLPQSSAK TQPEPKSVQT ATKSQCSAAG ENSTTRP00000015518/1-694 STSQKTGPSS SRSPGRTPLS IVSLPQSSAK AHPEPKSAQT ATKSQCLAKG bmy_16465T0/1-649 STSQKTGPSS SRSPGRTPLS IVSLPQSSAK AQPEPKSAQT AAKSQCLAKA BACU020434/1-690 STSQKTGPSS SRSPGRTPLS IVSLPQSSAK AQPEPKSAQT ATKSQCLAKG 651 700 ENSP00000439672/1-694 PPRSGKTPAS IRKPPSSVKD ADSGDKKPTA KKKEDDDHYF VMTGSKKPRK ENSBTAP00000018363/1-687 PPKSGKAPAS TRKPPSSGKE TVSADEKPSA KKKEDDDHYF VMTGSKKPRK ENSTTRP00000015518/1-694 LPKSGKAPAA TRKPPSSVKE AVSGDKKP-A KKSEDNDHYF VMTGSKKPRK bmy_16465T0/1-649 PPKSGKAPAA TRKPPSSGKE AVSGDKKPSA KKKEDDDHYF VMTG------ BACU020434/1-690 PSKSGKALAA TRKPPSSGKE AVSGDKKPSA KKTEDDDHYF VMTGSKKPRK