KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:04:22 2014 Check: 00 .. Name: ENSP00000443459/1-398 Len: 398 Check: 1075 Weight: 1.00 Name: ENSBTAP00000018370/1-386 Len: 398 Check: 6703 Weight: 1.00 Name: bmy_04178T0/1-342 Len: 398 Check: 6866 Weight: 1.00 Name: ENSTTRP00000004179/1-386 Len: 398 Check: 7334 Weight: 1.00 // 1 50 ENSP00000443459/1-398 MASPLRSAAA LARQDCSNGC SAECTGEGGS KEVVGTFKAK DLIVTPATIL ENSBTAP00000018370/1-386 ---------- --MKDCNNGC SAEGTGEGGS KETVETFKAE DLIITRATVL bmy_04178T0/1-342 MASPPPAAAA LARQDCNNGC SAECTGEAGS KEVVETFKAK DLIITPATVL ENSTTRP00000004179/1-386 ---------- --MKDCNNGC SAECTGEGGS KEVVETFKAK DLIITPATVL 51 100 ENSP00000443459/1-398 KEKPDPNNLV FGTVFTDHML TVEWSSEFGW EKPHIKPLQN LSLHPGSSAL ENSBTAP00000018370/1-386 KEKPDSSTLV FGTVFTDHML TVEWSLELGW EKPRIKPLQN LSLHPGSSAF bmy_04178T0/1-342 KEKPDPNTLV FGTVFTDHML TVEWSSEFGW EKPHIKPLQN LSLHPGSSAF ENSTTRP00000004179/1-386 KEKPDPNTLV FGTVFTDHML TVEWSLEFGW EKPHIKPLQN LSLHPGSSAF 101 150 ENSP00000443459/1-398 HYAVELFEGL KAFRGVDNKI RLFQPNLNMD RMYRSAVRAT LPVFDKEELL ENSBTAP00000018370/1-386 HYAVELFEGL KAFRGVDNKI RLFRPNLNMD RMYRSAMRAT LPAFDKKELL bmy_04178T0/1-342 HYAVELFEGL KAFRGVDNKI RLFRPNLNMD RMYRSAMRAT LP-------- ENSTTRP00000004179/1-386 HYAVELFEGL KAFRGVDNKI RLFRPKLNMD RMYRSAMRTT LPAFDKEELL 151 200 ENSP00000443459/1-398 ECIQQLVKLD QEWVPYSTSA SLYIRPTFIG TEPSLGVKKP TKALLFVLLS ENSBTAP00000018370/1-386 ECIQQLVKLD EEWVPYSTSA SLYIRPTFIG TEPSLGVKKP TKALLFVILS bmy_04178T0/1-342 ---------- ---------- ---------- --PSLGVKKP TKALLFVILS ENSTTRP00000004179/1-386 ECIQQLVKLD QEWVPYSTSA SLYIRPTFIG TEPSLGVKKP TKALLFVILS 201 250 ENSP00000443459/1-398 PVGPYFSSGT FNPVSLWANP KYVRAWKGGT GDCKMGGNYG SSLFAQCEAV ENSBTAP00000018370/1-386 PVGPYFSTGS FNPVSLWANP KYVRAWKGGT GDCKMGGNYG SSLFAQCEAV bmy_04178T0/1-342 PVGPYFSSGS FNPVSLWANP K--------- -------NYG SSLFAQCEAM ENSTTRP00000004179/1-386 PVGPYFSSGS FNPVSLWANP KYVRAWKGGT GDCKMGGNYG SSLFAQCEAM 251 300 ENSP00000443459/1-398 DNGCQQVLWL YGEDHQITEV GTMNLFLYWI NEDGEEELAT PPLDGIILPG ENSBTAP00000018370/1-386 ENACQQVLWL YGEDNQITEV GTMNLFLYWI NEDGEEELAT PPLDGIILPG bmy_04178T0/1-342 DNACQQVLWL YGEDNQITEV GTMNLFLYWI NEDGEEELAT PPLDGIILPG ENSTTRP00000004179/1-386 DNACQQVLWL YGEDHQITEV GTMNLFLYWI NEDGEEELAT PPLDGIILPG 301 350 ENSP00000443459/1-398 VTRRCILDLA HQWGEFKVSE RYLTMDDLTT ALEGNRVREM FGSGTACVVC ENSBTAP00000018370/1-386 VTRQSILDLA HKWGEFKVSE RYLTMDDLTT AVEENRVREM FGSGTACVVC bmy_04178T0/1-342 VMRQSILDLA HKWGEFKVSE RYLTMDDLTT AVEENRVREM FGSGTACVVC ENSTTRP00000004179/1-386 VTRQSILDLS HKWGEFKVSE RYLTMDDLNT AVEENRVREM FGSGTACVVC 351 400 ENSP00000443459/1-398 PVSDILYKGE TIHIPTMENG PKLASRILSK LTDIQYGREE SDWTIVLS ENSBTAP00000018370/1-386 PVSTILYKDE TIHIPTMENG PKLASRILEK LTDIQYGREE SDWTITVA bmy_04178T0/1-342 PVSNILYKGE TIHIPTMENG PKLASRILDK LTGIQYGREE SDWTITVS ENSTTRP00000004179/1-386 PVSNILYKGE TIHIPTMENG PKLASRILDK LTDIQYGREE SDWTITVS