KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:23 2014 Check: 00 .. Name: ENSP00000257192/1-1049 Len: 1058 Check: 4383 Weight: 1.00 Name: ENSTTRP00000000815/1-1048 Len: 1058 Check: 2647 Weight: 1.00 Name: ENSBTAP00000018382/1-1043 Len: 1058 Check: 6098 Weight: 1.00 Name: bmy_18622T0/1-952 Len: 1058 Check: 2650 Weight: 1.00 Name: BACU001567/1-1045 Len: 1058 Check: 3443 Weight: 1.00 // 1 50 ENSP00000257192/1-1049 MDWSFFRVVA MLFIFLVVVE VNSEFRIQVR DYNTKNGTIK WHSIRRQKRE ENSTTRP00000000815/1-1048 MNWPFFRTAA VLFIFLVVLE VNSEFQIQVR DYNSKNGTIK WRSIRRQKRE ENSBTAP00000018382/1-1043 MNWPFFRAAV VLFIFLVVLE VNSDFRIQVR DYNTKNGTIK WHSLRRQKRE bmy_18622T0/1-952 MNWPFFRTAA VLFIFLVVLE VNSEFQIQVR DYNTKNGTIK WHSVRRQKRE BACU001567/1-1045 MNWPFFRTAA VLSIFLVVLE VNSEFQIQVR DYNTKNGTIK WHSVRRQKRE 51 100 ENSP00000257192/1-1049 WIKFAAACRE GEDNSKRNPI AKIHSDCAAN QQVTYRISGV GIDQPPYGIF ENSTTRP00000000815/1-1048 WIKFAAACRE GEDNSKRNPI AKIHSDCAAN QQVTYRISGV GIDQPPYGIF ENSBTAP00000018382/1-1043 WIKFAAACRE GEDNSKRNPI AKIHSDCAAN QQVTYRISGV GIDQPPYGIF bmy_18622T0/1-952 WIKFAAACRE GEDNSKRNPI AKIHSDCAAN QQVTYRISGV GIDQPPYGIF BACU001567/1-1045 WIKFAAACRE GEDNSKRNPI AKIHSDCAAN QQVTYRISGV GIDQPPYGIF 101 150 ENSP00000257192/1-1049 VINQKTGEIN ITSIVDREVT PFFIIYCRAL NSMGQDLERP LELRVRVLDI ENSTTRP00000000815/1-1048 VINQKTGEIN ITSIVDREVT PFFIIYCRAV DSLGQDLERV LELRVRVLDI ENSBTAP00000018382/1-1043 VINQKTGEIN ITSIVDREVT PFFIIYCRAL NSLGQDLEKP LELRVRVLDI bmy_18622T0/1-952 VVNQKTGEIN ITSIVDREVT PFFIIYCRAV NSLGQDLERI LELRVRVLDI BACU001567/1-1045 VINQKTGEIN ITSIVDREVT PFFTIYCRAV NSLGQDLERI LELRVRVLDI 151 200 ENSP00000257192/1-1049 NDNPPVFSMA TFAGQIEENS NANTLVMILN ATDADEPNNL NSKIAFKIIR ENSTTRP00000000815/1-1048 NDNPPVFSMS TFLGQIEENS NANTLVMMLN ATDADEPNNL NSKIAFKIVR ENSBTAP00000018382/1-1043 NDNPPVFSMS TFVGEIEENS NANTLVMVLN ATDADEPNNL NSKIAFKIIR bmy_18622T0/1-952 NDNPPVFSMS TFLGQIEENS NANTLVMMLN ATDADEPNNL NSKIAFKIVR BACU001567/1-1045 NDNPPVFSMS TFLGQIEENS NANTLVMILN ATDADEPNNL NSKIAFKIVR 201 250 ENSP00000257192/1-1049 QEPSDSPMFI INRNTGEIRT MNNFLDREQY GQYALAVRGS DRDGGADGMS ENSTTRP00000000815/1-1048 QEPSDSPMFI INRYTAEIRT MNTFLDREQY GQYSLVVRGS DRDGGADGMA ENSBTAP00000018382/1-1043 QEPSDSPMFI INRYTGEIRT MNNFLDREQY GQYSLAVRGS DRDGGADGMS bmy_18622T0/1-952 QEPPDSTMFI INRYTAEIRT RNNFLDREQY GQYSLFVRGS DRDGGADGMA BACU001567/1-1045 QEPSDAPMFI INRYTAEIRT MNNFLDREQY GQYSLFVRGS DRDGRADGMA 251 300 ENSP00000257192/1-1049 AECECNIKIL DVNDNIPYME QSSYTIEIQE NTLNSNLLEI RVIDLDEEFS ENSTTRP00000000815/1-1048 AECECSIKIL DVNDNFPYME QSSYSISIEE NVLNSNLLQI RIIDLDEEFS ENSBTAP00000018382/1-1043 AECECNIKIL DVNDNIPYME LPTQSISIEE NSLNSNLLQI RVIDLDEEFS bmy_18622T0/1-952 AECECSIKIL DVNDNIPYME QSSYSISIEE NALNSNLLQI RIIDLDEEFS BACU001567/1-1045 AECECSIKIL DVNDNIPYME QSSYSISIEE NALNSNLLQI RIIDLDEEFS 301 350 ENSP00000257192/1-1049 ANWMAVIFFI SGNEGNWFEI EMNERTNVGI LKVVKPLDYE AMQSLQLSIG ENSTTRP00000000815/1-1048 ANWMAVIFFI SGNEGNWFEI EMNERTNVGT LKVIKALDYE ATKNLQLSLG ENSBTAP00000018382/1-1043 ANWMAVIFFI SGNEGNWFEI EMNERTNVGT LKVVKPLDFE AMNNLQLSLG bmy_18622T0/1-952 ANWMAVIFFI SGNEGNWFDI EMNERTNVGT LKVIKPLDYE AMKNLQLSLG BACU001567/1-1045 ANWMAVIFFI SGNEGNWFDI EMNERTNVGT LKVIKPLDYE AMKNLQLSLG 351 400 ENSP00000257192/1-1049 VRNKAEFHHS IMSQYKLKAS AISVTVLNVI EGPVFRPGSK TYVVTGNMGS ENSTTRP00000000815/1-1048 VRNKVEFHQS IKSQYKLTAT AVSVTVLNVV EGSVFRPGSK TFVVTREMGQ ENSBTAP00000018382/1-1043 VRNKAEFHQS IMSQYKLTAT AISVTVLNVV EGSVFRPGSK TFVVNSNMGQ bmy_18622T0/1-952 VRNKAEFHQS IMSQYKLTAT AVSVTVLNVV EGSVFRPGSK TFTVTREMGQ BACU001567/1-1045 VRNKAEFHQS IMSRYKLTAT AVSVTVLNVV EGSVFRPGSK TFIVTSEMGQ 401 450 ENSP00000257192/1-1049 NDKVGDFVAT DLDTGRPSTT VRYVMGNNPA DLLAVDSRTG KLTLKNKVTK ENSTTRP00000000815/1-1048 NYQLGDFIAT DLDTGLPSTT VXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000018382/1-1043 NYKIGEYVAW DLDANRPSTT VRYVMGRNPT DLLAIDSKTA IITLRNKVTM bmy_18622T0/1-952 SYQLGDFIAT DLDTGLPSTT VRYVMGSNPA GLIAIDSKTG IIILRNKVTV BACU001567/1-1045 NYKLGDFIAT DLDTGLLSTT VRYVMGSNPA GLITIDSKKG IIILRNKVTV 451 500 ENSP00000257192/1-1049 EQYNMLGGKY QGTILSIDDN LQRTCTGTIN INIQ-SFGND DRTNTEPNTK ENSTTRP00000000815/1-1048 XXXXXXXXXX XXXXXXXXXA LQKTSTGTII IKLESDSGKD GAPSNDNNTS ENSBTAP00000018382/1-1043 EQYKILGGKY QGTILSIDDA LQRTCTGTIV INLE-NGGWK TERPNVNGST bmy_18622T0/1-952 QQYEILKEKY QGTILSIDDA LQRTSTGTII IKLE-D---- -DEPSNNNTS BACU001567/1-1045 QQYEMLKGKY QGTILSIDDT LQRTSTGTII IKLE-DSSWN GDEPSNNNTS 501 550 ENSP00000257192/1-1049 ITTNTGRQES TSSTNYDTST TSTDSSQVYS SEPGNGAKDL ---LSDNVHF ENSTTRP00000000815/1-1048 TSRNGLTSSD VTIDTNKNVG TVSTNTFGVG GTTAFRSIKE -----DNVYF ENSBTAP00000018382/1-1043 TSAYSLTSGG VTTNGYITGV GGGANTLAVG TSVYVREPDT YQTIGDNVHF bmy_18622T0/1-952 TSTNGLTSSD VTTNTXKNDG TVSTNTFVVG HSTAFNLKNN -----DNVHF BACU001567/1-1045 TSTNGLSSSD VTTNAYKNGG TAGRNTFDVG HSTTFKLKDN -----DNVHF 551 600 ENSP00000257192/1-1049 GPAGIGLLIM GFLVLGLVPF LMICCDCGGA PRSAAGFEPV PECSDGAIHS ENSTTRP00000000815/1-1048 GPAGIGLLIM GFLILGXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000018382/1-1043 GPAGIGLLIM GFLVLGLVPF LLMCCDCGGA PGGGAAFEPV PECSDGAIHS bmy_18622T0/1-952 GPAGIGLLIM GFLVLGLVPF LLMFCDCGGV PGSGGRFKPV PECLDGAIHS BACU001567/1-1045 GAAGIGLLIM GFLVLGLVPL LLMFCDCGGV PGSGARFKPV PECMDGAIHS 601 650 ENSP00000257192/1-1049 WAVEGPQPEP RDITTV-IPQ IPPDNANIIE CIDNSGVYTN EYGGREMQDL ENSTTRP00000000815/1-1048 XXXXXXXXXX XDLTNIGAPQ IPPNNADTIE CIDNSGVYTN EYHGRKMQDL ENSBTAP00000018382/1-1043 WAVEGAQADP GVLASSAVPC IPATNANVIE YVDNSGVYTN EYGAREMQDL bmy_18622T0/1-952 WAVEGAQPKL VDLTNISAPQ IPPNNADIIE CLDNSGVYTN EYRGRKMQDL BACU001567/1-1045 WAVEGAQPKL ADLTNISAPR IPPNNADIIE CLDNPGVYTN EYRGRKMQDL 651 700 ENSP00000257192/1-1049 GGGERMTGFE LTEGVKTSGM PEICQEYSGT LRRNSMRECR EGGLNMNFME ENSTTRP00000000815/1-1048 GGGERTTALE LVDGVKTSGQ PKICQEYSGT L-RSSVRDCR EGGLNMNFME ENSBTAP00000018382/1-1043 GGGERTTGFE LTDGVKMSGG PEICQEYPGT LRRNSMRECR EGGLNMNFME bmy_18622T0/1-952 GGGEKTTALE VVDGVKTSGA PKICQEYSGT LRRSSMRECR EGGLNMNFME BACU001567/1-1045 GGGEKTTALE LVDGVKTSGA PKICQEYSGT LRRSSMRECR EGGLNMNFME 701 750 ENSP00000257192/1-1049 SYFCQKAYAY ADEDEGRPSN DCLLIYDIEG VGSPAGSVGC CSFIGEDLDD ENSTTRP00000000815/1-1048 SYFCQKAYAY ADEDEARPSN DCLLIYDIEG VGSPAGSVGC CSFIGEDLDD ENSBTAP00000018382/1-1043 SYFCQKAYAY ADEDEGRPSN DCLLIYDIEG AGSPAGSVGC CSFIGEDLDD bmy_18622T0/1-952 NYFCQKAYAY ADEDEARPSN DCLLIYDIEG VGSPAGSVGC CSFIGEDLDD BACU001567/1-1045 SYFCQKAYAY ADEDEARPSN DCLLIYDIEG VGSPAGSVGC CSFIGEDLDD 751 800 ENSP00000257192/1-1049 SFLDTLGPKF KKLADISLGK --ESYPDLDP SWPPQSTEPV CLPQETEPVV ENSTTRP00000000815/1-1048 SFLDTLGPKF KKLADISLGK GVEPYLDPDP SWPPDSTEPI CPLQGTEPIG ENSBTAP00000018382/1-1043 SFLDTLGPKF KKLADISLGK DVEPFPDSDP SWPPESTEPV CPPQGTEPTG bmy_18622T0/1-952 SFLDTLGPKF KKLADISLGK GVEPYPDPDP SWPPDSTEPT CPLQGTEPIG BACU001567/1-1045 SFLDTLGPKF KKLADISLGK GVEPYPDPDP SWPPDSTEPI CPLQGTEPIG 801 850 ENSP00000257192/1-1049 SGHPPISPHF GTTTVISEST YPSGPGVLHP KPILDPLGYG NVTVTESYTT ENSTTRP00000000815/1-1048 SGHPHTSPHF GTTTTISDSN YPSGPGVQH- -PIPDPLGYG NVTLTESYTT ENSBTAP00000018382/1-1043 GGHPPISPRF GTTTVISENT YPSGPGVQHP TPIPDPLGYG NVTVTESYTS bmy_18622T0/1-952 GGHPHISPHF GTTTIISEST YSSGRGVQH- -PIPDPLGYG NVTLTESYTT BACU001567/1-1045 SGHPHISPHF GTTTIISEST YPSGPGVQH- -PIPDPLGYG NVTLTESYTT 851 900 ENSP00000257192/1-1049 SDTLKPSVHV HDNRPASNVV VTERVVGPIS GADLHGMLEM PDLRDGSNVI ENSTTRP00000000815/1-1048 LGTLKPSVHV HDNRHASNVV VTEKVVGPIS GANLHGMLEM PDFRDGSNVI ENSBTAP00000018382/1-1043 SGTLKPSVHI HDNRHASNVV VTERVVGPIS GADLQGMLEM PDLRDGSNVI bmy_18622T0/1-952 LGTLKPSVHV YDNQHASNVV VTERVVGPIS GVNLHGMLEM PDLRDGSNVI BACU001567/1-1045 LGTLKPSVHV HDNQHASNVV VTERVVGPIS GANLHGMLEM PDLRDGSNVI 901 950 ENSP00000257192/1-1049 VTERVIAPSS SLPTSLTIHH PRESSNVVVT ERVIQPTSGM IGSLSMHPEL ENSTTRP00000000815/1-1048 VTERVITPGS SLPSTLTIPD PRESSNVVVT ERVIQPTSGL VGNLSVHPNL ENSBTAP00000018382/1-1043 VTERVIAPSS SLPTTLTIPD PRQSSNVVVT ERVIQPTSGI VGNLSMHPEL bmy_18622T0/1-952 VTERVITPGS SLPSTLTLPD PRESSNVVVT ERVIRPNSGL VGNLSVHSDL BACU001567/1-1045 VTERVITPGS SLPSTLTIPD PRESSNVVVT ERVIRPNSGL VGNLSVHSDF 951 1000 ENSP00000257192/1-1049 ANAHNVIVTE RVVSGAGVTG ISGTTGISGG --IGSSGLVG TSMGAGSGAL ENSTTRP00000000815/1-1048 SNTHNVXXXX XXXXXXXXXX XXXXXXXXXX --XXXXXXXX XXXXXXXXXX ENSBTAP00000018382/1-1043 SNTHNVIVTE RVVSGSGITG SSSLLGSAGG ---------G SGGGIGLGSL bmy_18622T0/1-952 SNTRNVIVTE KVVSG----- ---------- ---------- ---------- BACU001567/1-1045 SNTHNVIVTE KVVSGSSITG ISGSAGLGGG SGIGSSGLVG NGGGIGLSSL 1001 1050 ENSP00000257192/1-1049 SGAGISGGGI GLSSLGGTAS IGHMRSSSDH HFNQTIGSAS PSTARSRITK ENSTTRP00000000815/1-1048 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXTARSRITT ENSBTAP00000018382/1-1043 -----GGGGG LSSSLGGAAT IGHLRGSAEH HFSNTLGSAS PTTTRSRITK bmy_18622T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU001567/1-1045 -----GGGGG LSSSIGGTST IGHLRGSSEH HFSNTLGSAS PITAQSRITK 1051 1100 ENSP00000257192/1-1049 YSTVQYSK ENSTTRP00000000815/1-1048 YSTGQYTK ENSBTAP00000018382/1-1043 YSTVQYTK bmy_18622T0/1-952 -------- BACU001567/1-1045 YGTGQYAK