KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:25 2014 Check: 00 .. Name: BACU011937/1-527 Len: 666 Check: 4890 Weight: 1.00 Name: ENSP00000287461/1-500 Len: 666 Check: 9644 Weight: 1.00 Name: ENSBTAP00000018399/1-500 Len: 666 Check: 6365 Weight: 1.00 Name: bmy_00748T0/1-655 Len: 666 Check: 994 Weight: 1.00 Name: ENSTTRP00000001642/1-500 Len: 666 Check: 1132 Weight: 1.00 // 1 50 BACU011937/1-527 MNRSRPDGVI FSGDKPYSCP DCGRSFHQTA ALVIHRHRHG GEKLYLCTQC ENSP00000287461/1-500 --MAPPSAPL PAQGPGKARP SRKRGRRPRA L------KFV DVAVYFSPEE ENSBTAP00000018399/1-500 --MARPSAPL PARGPGEARP GRRRGRRPRA V------KFG DVALYFSREE bmy_00748T0/1-655 --MARPSAPL PARGPGEAGP GRRRGRRPRA V------KFG DVALYFSPEE ENSTTRP00000001642/1-500 --MARPSAPL PARGPGEAGP GRRRGRRPRA V------KFG DVAVYFSPEE 51 100 BACU011937/1-527 GYHFTHPSLL AIHQCICTRQ KPHICSDCGR GFAYPSLLTN HQQFHSGCAG ENSP00000287461/1-500 -WGCLRPAQR ALYRDVMRET YGHLGAL--- ---------- ------GCAG ENSBTAP00000018399/1-500 -WGCLRPAQR ALYRDVMQET YGHLGAL--- ---------- ------GCAG bmy_00748T0/1-655 -WECLRPAQR ALYRDVMQET YGHLGALDKS TQRYVRAGPL TDSPSPGCAG ENSTTRP00000001642/1-500 -WECLWPAQR ALYRDVMQET YGHLGAL--- ---------- ------GCAG 101 150 BACU011937/1-527 PKPALISWLE RNTDDWEPAA LDPQECPRRV TVQRKTRTR- KNEEKEVFPP ENSP00000287461/1-500 PKPALISWLE RNTDDWEPAA LDPQEYPRGL TVQRKSRTRK KNGEKEVFPP ENSBTAP00000018399/1-500 PKPALISWLE RNTDDWETAA LDPQECPKGV AVQRK--TRK KNEEKEVFPP bmy_00748T0/1-655 PKPALISWLE RNTDDWEPAA LDPQECPRRV TVQRKTRTRK KNEEKEVFPP ENSTTRP00000001642/1-500 PKPTLISWLE RNTDDWEPAA LDPQECPRRV TVQRKTRTRK KNEEKEVFPP 151 200 BACU011937/1-527 KEAPRKGKRG RRPSKPRLIP RQTSGGPICP DCGCTFPDHL ALQSHKCAQN ENSP00000287461/1-500 KEAPRKGKRG RRPSKPRLIP RQTSGGPICP DCGCTFPDHQ ALESHKCAQN ENSBTAP00000018399/1-500 KEAPRKGKRG RRPSKPRLIP RQTSGSPICP DCGCTFPDHP ALQRHKCAQN bmy_00748T0/1-655 KEAPRKGKRG RRPSKPRLIP RQTSGGPICP DCGCTFPDHP ALQSHKCAQN ENSTTRP00000001642/1-500 KEAPRKGKRG RRPSKPRLIP RQTSGGPICP DCGCTFPDHP ALQSHKCAQN 201 250 BACU011937/1-527 LKKPYPCPDC GRRFSYPSLL VSHRRAHSGE CPYVCDQCGK RFSQRKNLSQ ENSP00000287461/1-500 LKKPYPCPDC GRRFSYPSLL VSHRRAHSGE CPYVCDQCGK RFSQRKNLSQ ENSBTAP00000018399/1-500 LKKPYPCPDC GRRFSYPSLL VSHRRAHSGE CPYVCDQCGK RFSQRKNLSQ bmy_00748T0/1-655 LKKPYPCPDC GRRFSYPSLL VSHRRAHSGE CPYVCDQCGK RFSQRKNLSQ ENSTTRP00000001642/1-500 LKKPYPCPDC GRRFSYPSLL VSHRRAHSGE CPYVCDQCGK RFSQRKNLSQ 251 300 BACU011937/1-527 HQVIHTGEKP YHCPDCGRCF RRSRSLANHR TTHTGEKPHQ CPSCGRRFAY ENSP00000287461/1-500 HQVIHTGEKP YHCPDCGRCF RRSRSLANHR TTHTGEKPHQ CPSCGRRFAY ENSBTAP00000018399/1-500 HQVIHTGEKP YHCPDCGRCF RRSRSLANHR TTHTGEKPHQ CPSCGRRFAY bmy_00748T0/1-655 HQVIHTGEKP YHCPDCGRCF RRSRSLANHR TTHTGEKPHQ CPSCGRRFAY ENSTTRP00000001642/1-500 HQVIHTGEKP YHCPDCGRCF RRSRSLANHR TTHTGEKPHQ CPSCGRRFAY 301 350 BACU011937/1-527 PSLLAIHQRT HTGEKPYTCL ECNRRFRQRT ALVIHQRIHT GEKPYPCPDC ENSP00000287461/1-500 PSLLAIHQRT HTGEKPYTCL ECNRRFRQRT ALVIHQRIHT GEKPYPCPDC ENSBTAP00000018399/1-500 PSLLAIHQRT HTGEKPYPCL ECNRRFRQRT ALVIHQRIHT GEKPYPCPDC bmy_00748T0/1-655 PSLLAIHQRT HTGEKPYTCL ECNRRFRQRT ALVIHQRIHT GEKPYPCPDC ENSTTRP00000001642/1-500 PSLLAIHQRT HTGEKPYTCL ECSRRFRQRT ALVIHQRIHT GEKPYPCPDC 351 400 BACU011937/1-527 ERRFSSSSRL VSHRRVHSGE RPYACEHCEA RFSQRSTLLQ HQLLHTGEKP ENSP00000287461/1-500 ERRFSSSSRL VSHRRVHSGE RPYACEHCEA RFSQRSTLLQ HQLLHTGEKP ENSBTAP00000018399/1-500 ERRFSSSSRL VSHQRVHSGE RPYACEHCEA RFSQRSTLLQ HQLLHTGEKP bmy_00748T0/1-655 ERRFSSSSRL VSHRRVHSGE RPYACEHCEA RFSQRSTLLQ HQLLHTGEKP ENSTTRP00000001642/1-500 ERRFSSSSRL VSHRRVHSGE RPYACEHCEA RFSQRSTLLQ HQLLHTGEKP 401 450 BACU011937/1-527 YPCPDCGRAF RRSGSLAIHR STHT--EEKL HACDDCGRRF AYPSLLASHR ENSP00000287461/1-500 YPCPDCGRAF RRSGSLAIHR STHT--EEKL HACDDCGRRF AYPSLLASHR ENSBTAP00000018399/1-500 YPCPDCGRAF RRSGSLAIHR STHTKEKEKL HACDDCGRRF AYPSLLASHR bmy_00748T0/1-655 YPCPDCGRAF RRSGSLAIHR STHT--EEKL HACDDCGRRF AYPSLLASHR ENSTTRP00000001642/1-500 YPCPDCGRAF RRSGSLAIHR STHT--EEKL HACDDCGRRF AYPSLLASHR 451 500 BACU011937/1-527 RVHSGERPYA CDLCSKRFAQ WSHLAQHQLL HTGEKPFPCL ECGRCFRQRW ENSP00000287461/1-500 RVHSGERPYA CDLCSKRFAQ WSHLAQHQLL HTGEKPFPCL ECGRCFRQRW ENSBTAP00000018399/1-500 RVHSGERPYA CDLCSKRFAQ WSHLAQHQLL HTGEKPFPCL ECGRCFRQRW bmy_00748T0/1-655 RVHSGERPYA CDLCSKRFAQ WSHLAQHQLL HTGEKPFPCL ECGRCFRQRW ENSTTRP00000001642/1-500 RVHSGERPYA CDLCSKRFAQ WSHLAQHQLL HTGEKPFPCL ECGRCFRQRW 501 550 BACU011937/1-527 SLAVHKCSPG VQNCSPRSAI GAP------- ---------- ---------- ENSP00000287461/1-500 SLAVHKCSPK APNCSPRSAI GGS------- ---------- ---------- ENSBTAP00000018399/1-500 SLAVHKCIPG VQNCGPRSAI GAP------- ---------- ---------- bmy_00748T0/1-655 SLAVHKCSPR VQNSSLRSTE GFPMAPPPVL FPVADVPGEA GTGRTRESSP ENSTTRP00000001642/1-500 SLAVHKCSPG VQNCSPRSAI GVP------- ---------- ---------- 551 600 BACU011937/1-527 ---------- ---------- ---------- ---------- ---------- ENSP00000287461/1-500 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018399/1-500 ---------- ---------- ---------- ---------- ---------- bmy_00748T0/1-655 GAVRFVGCGR VLLPGGVGVS AARAEVPEPG RDAGDLWLPG RARWKERWRR ENSTTRP00000001642/1-500 ---------- ---------- ---------- ---------- ---------- 601 650 BACU011937/1-527 ---------- ---------- ---------- ---------- ---------- ENSP00000287461/1-500 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018399/1-500 ---------- ---------- ---------- ---------- ---------- bmy_00748T0/1-655 GAQRPRIHIS AAVSRDEGKV LHFKPQVVTF ENLLPHSEPQ HTLPTLEPLR ENSTTRP00000001642/1-500 ---------- ---------- ---------- ---------- ---------- 651 700 BACU011937/1-527 ------SQKG NAL--- ENSP00000287461/1-500 ------SQRG NAH--- ENSBTAP00000018399/1-500 ------SQKG QAL--- bmy_00748T0/1-655 VSLHLICRKG STEQLN ENSTTRP00000001642/1-500 ------SQKG NAL---