KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:26 2014 Check: 00 .. Name: bmy_18964T0/1-275 Len: 380 Check: 8259 Weight: 1.00 Name: ENSTTRP00000013521/1-369 Len: 380 Check: 9687 Weight: 1.00 Name: BACU015441/1-187 Len: 380 Check: 3617 Weight: 1.00 Name: ENSP00000322977/1-361 Len: 380 Check: 4441 Weight: 1.00 Name: ENSBTAP00000018404/1-361 Len: 380 Check: 4441 Weight: 1.00 // 1 50 bmy_18964T0/1-275 MYGKGKSNSS AVPSDSQARE N--------- ---------- ---------- ENSTTRP00000013521/1-369 MYGKGKSNSS AVPSDSQARE XXXXXXXXXX XXXXXXXXXX XXXXXIRWEK BACU015441/1-187 ---------- ---------- ---------- ---------- ---------- ENSP00000322977/1-361 MYGKGKSNSS AVPSDSQARE KLALYVYEYL LHVGAQKSAQ TFLSEIRWEK ENSBTAP00000018404/1-361 MYGKGKSNSS AVPSDSQARE KLALYVYEYL LHVGAQKSAQ TFLSEIRWEK 51 100 bmy_18964T0/1-275 ---------- ------VFWD LYCAAPERRE TCEHSSEAKA FHDYSAAAAP ENSTTRP00000013521/1-369 NITLGEPPGF LHSWWCVFWD LYCAAPERRE TCEHSSEAKA FHDYSAAAAP BACU015441/1-187 ---------- ---------- ---------- ---------- ----SAAAAP ENSP00000322977/1-361 NITLGEPPGF LHSWWCVFWD LYCAAPERRE TCEHSSEAKA FHDYSAAAAP ENSBTAP00000018404/1-361 NITLGEPPGF LHSWWCVFWD LYCAAPERRE TCEHSSEAKA FHDYSAAAAP 101 150 bmy_18964T0/1-275 SPVLGNIPPG DGMPVGPVPP GFFQPFMSPR YPGGPRPPLR IPNQ------ ENSTTRP00000013521/1-369 SPVLGNIPPG DGMPVGPVPP GFFQPFMSPR YPGGPRPPLR IPNQALGGVP BACU015441/1-187 SPVLGNIPPG DGMPVGPVPP GFFQPFMSPR YPGGPRPPLR IPNQALGGVP ENSP00000322977/1-361 SPVLGNIPPG DGMPVGPVPP GFFQPFMSPR YPGGPRPPLR IPNQALGGVP ENSBTAP00000018404/1-361 SPVLGNIPPG DGMPVGPVPP GFFQPFMSPR YPGGPRPPLR IPNQALGGVP 151 200 bmy_18964T0/1-275 ---------I ERTSKYGWAN A--------- ---------- -------END ENSTTRP00000013521/1-369 GSQPLLPSGM DPTRQQGHPN MGGPMQRMTP PRGMVPLGPQ SDPWLSLQNY BACU015441/1-187 GSQPLLPSGM DPTRQQGHPN MGGPMQRMTP PRGMVPLGP- -------QNY ENSP00000322977/1-361 GSQPLLPSGM DPTRQQGHPN MGGPMQRMTP PRGMVPLGP- -------QNY ENSBTAP00000018404/1-361 GSQPLLPSGM DPTRQQGHPN MGGPMQRMTP PRGMVPLGP- -------QNY 201 250 bmy_18964T0/1-275 ASKRNGALRT TGIPILMEVI VITSDTGH-- -SDTILLSIS WELCSKYIW- ENSTTRP00000013521/1-369 GGAMRPPLNA LGGP-GMPGM NMGPGGGRPW PNPTNANSIP YSSASPGNYV BACU015441/1-187 GGAMRPPLNA LGGP-GMPGM NMGPGGGRPW PNPTNANS-- ---------- ENSP00000322977/1-361 GGAMRPPLNA LGGP-GMPGM NMGPGGGRPW PNPTNANSIP YSSASPGNYV ENSBTAP00000018404/1-361 GGAMRPPLNA LGGP-GMPGM NMGPGGGRPW PNPTNANSIP YSSASPGNYV 251 300 bmy_18964T0/1-275 GPPGGGGPPG TPIMPSPADS TNSGDNMYTL MNAVPPGPNR PNFPMGPGSD ENSTTRP00000013521/1-369 GPPGGGGPPG TPIMPSPADS TNSGDNMYTL MNAVPPGPNR PNFPMGPGSD BACU015441/1-187 ---------- ---------- ---------- ---------- ---------- ENSP00000322977/1-361 GPPGGGGPPG TPIMPSPADS TNSGDNMYTL MNAVPPGPNR PNFPMGPGSD ENSBTAP00000018404/1-361 GPPGGGGPPG TPIMPSPADS TNSGDNMYTL MNAVPPGPNR PNFPMGPGSD 301 350 bmy_18964T0/1-275 GPMGALGGME SHHMNGSLGS GDMDSISKNS PNNMSLSNQP GTPRDDGEMG ENSTTRP00000013521/1-369 GPMGGLGGME SHHMNGSLGS GDMDSISKNS PNNMSLSNQP GTPRDDGEMG BACU015441/1-187 ---------- ---------- --------NS PNNMSLSNQP GTPRDDGEMG ENSP00000322977/1-361 GPMGGLGGME SHHMNGSLGS GDMDSISKNS PNNMSLSNQP GTPRDDGEMG ENSBTAP00000018404/1-361 GPMGGLGGME SHHMNGSLGS GDMDSISKNS PNNMSLSNQP GTPRDDGEMG 351 400 bmy_18964T0/1-275 GNFLNPFQSE SD-------I YD-------- ENSTTRP00000013521/1-369 GNFLNPFQSE S--------- YSPSMTMSV- BACU015441/1-187 GNFLNPFQSE SVSIPLTTLL YPDFISEALL ENSP00000322977/1-361 GNFLNPFQSE S--------- YSPSMTMSV- ENSBTAP00000018404/1-361 GNFLNPFQSE S--------- YSPSMTMSV-