KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:29 2014 Check: 00 .. Name: ENSP00000386862/1-963 Len: 975 Check: 8502 Weight: 1.00 Name: ENSBTAP00000018420/1-963 Len: 975 Check: 2675 Weight: 1.00 Name: ENSTTRP00000005384/1-958 Len: 975 Check: 7216 Weight: 1.00 Name: bmy_03199T0/1-974 Len: 975 Check: 7758 Weight: 1.00 Name: BACU010997/1-963 Len: 975 Check: 2796 Weight: 1.00 // 1 50 ENSP00000386862/1-963 MAAQRIRAAN SNGLPRCKSE GTLIDLSEGF SETSFNDIKV PSPSALLVDN ENSBTAP00000018420/1-963 MAAQRIRAAN SSGLPRCKSE GTLIDLSEGF SESSFNDVKV PSPSALLVDN ENSTTRP00000005384/1-958 MAAQRIRAAN SSGLPRCKSE GTLIDLNEGF SETSFNDVKV PSPSALLVDN bmy_03199T0/1-974 MAAQRIRAAN SSGLPRCKSE GTLIDLSEGF SETSFNDVKV PSPSALLVDN BACU010997/1-963 MAAQRIRAAN SSGLPRCKSE GTLIDLSEGF SEASFNDVKV PSPSALLVDN 51 100 ENSP00000386862/1-963 PTPFGNAKEV IAIKDYCPTN FTTLKFSKGD HLYVLDTSGG EWWYAHNTTE ENSBTAP00000018420/1-963 PTPFGNAKEV IAIKDYCPTN FTTLKFSKGD HLYVLDTSGG EWWYAHNTTE ENSTTRP00000005384/1-958 PTPFGNAKEV IAIKDYCPTN FTTLKFSKGD HLYVLDTSGG EWWYAHNTTE bmy_03199T0/1-974 PTPFGNAKEV IAIKDYCPTN FTTLKFSKGD HLYVLDTSGG EWWYAHNTTE BACU010997/1-963 PTPFGNAKEV IAIKDYCPTN FTTLKFSKGD HLYVLDTSGG EWWYAHNTTE 101 150 ENSP00000386862/1-963 MGYIPSSYVQ PLNYRNSTLS DSGMIDNLPD SPDEVAKELE LLGGWTDDKK ENSBTAP00000018420/1-963 MGYIPSSYVQ PLNYRNSTLS DSGMIDNLPD SPDEVAKELD LLGGWTDAKK ENSTTRP00000005384/1-958 MGYIPSSYVQ PLNYRNSTLS DSGMIDNLPD SPDEVAKELD LLGGWTDDRR bmy_03199T0/1-974 MGYIPSSYVQ PLNYRNSTLS DSGMIDNLPD SPDEVAKELD LLGGWTDDRR BACU010997/1-963 MGYIPSSYVQ PLNYRNSTLS DSGMIDNLPD SPDEVAKELD LLGGWTDDRR 151 200 ENSP00000386862/1-963 VPGRMYSNNP FWNGVQTNPF LNGNVPVMPS LDELNPKSTV DLLLFDAGTS ENSBTAP00000018420/1-963 ESSKPYSNNP FWNGVQTNPF LNGNVPAMPS VDELMPRSAV DLLLFDTGTS ENSTTRP00000005384/1-958 ESSKTYSNNP FWNGVQTNPF LNGNVPALPS VDLPTPQSTV DLLLFDTGTS bmy_03199T0/1-974 ESSKTYSNNP FWNGVQTNPF LNGNVPAMPS VDLPTPKSTV DLLLFDTGTS BACU010997/1-963 ESSKTYSNNP FWNGVQTNPF LNGNVPAMPS ADLPTPKSTV DLLLFDTGTS 201 250 ENSP00000386862/1-963 SFTESSSATT NSTGNIFDEL PVTNGLHAEP PVRRDNPFFR SKRSYSLSEL ENSBTAP00000018420/1-963 SFTESSSATT NSTGNIFDEL PAAGRLPTEP PVKRDNPFFR SKRSYSLSEL ENSTTRP00000005384/1-958 SFTESSSATT ----NIFDEL PATSRLHAEP TVRRDNPFFR SKRSYSLSEL bmy_03199T0/1-974 SFTESSSAMT NSAGNIFDEL PATSRLHAEP TVRRDNPFFR SKRSYSLSEL BACU010997/1-963 SFTESSSAMT NSAGNIFDEL PATSRLHAEP TVRRDNPFFR SKRSYSLSEL 251 300 ENSP00000386862/1-963 SVLQAKSDAP TSSSFFTGLK SPAPEQFQSR EDFRTAWLNH RKLARSCHDL ENSBTAP00000018420/1-963 SVLQAKSDAP ASSGFFTGLK SPAPEQFQSR EDFRAAWLSH RKLARSCHDL ENSTTRP00000005384/1-958 SVLQAKSDTP ASSGFFTGLK SPAPEQFQSR EDFRAAWLSH RKLARSCHDL bmy_03199T0/1-974 SVLQAKSDTP ASSGFFTGLK SPAPEQFQSR EDFRAAWLSH RKLARSCHDL BACU010997/1-963 SVLQAKSDTP ASSGFFTGLK SPAPEQFQSR EDFRAAWLSH RKLARSCHDL 301 350 ENSP00000386862/1-963 DLLGQSPGWG QTQAVETNIV CKLDSSGGAV QLPDTSISIH VPEGHVAPGE ENSBTAP00000018420/1-963 DLLGQSPGWG QTQAVETNIV CKLDSSGGAV QLPDANISIH VPEGHVAPGE ENSTTRP00000005384/1-958 DLLGQSPGWG QTQAVETNIV CKLESSGGAV QLPDTSISIH VPEGHVAPGE bmy_03199T0/1-974 DLLGQSPGWG QTQAVETNIV CKLESSGGAV QLPDTNISIH VPEGHVAPGE BACU010997/1-963 DLLGQSPGWG QTQAVETNIV CKLESSGGAV QLPDTNISIH VPEGHVAPGE 351 400 ENSP00000386862/1-963 TQQISMKALL DPPLELNSDR SCSISPVLEV KLSNLEVKTS IILEMKVSAE ENSBTAP00000018420/1-963 MQQISMKALL DPPLELNSDR CSSISPVLEV KLSTLEVKTH LILEMKVSAE ENSTTRP00000005384/1-958 TQQISMKALL DPPLELNSDR CSCISPVLEV KLSTLEVKTH ILLEMKVSAE bmy_03199T0/1-974 TQQISMKALL DPPLELNSDR CSCISPVLEV KLSTLEVKTH IILEMKVSAE BACU010997/1-963 TQQISMKALL DPPLELNSDR CSCISPVLEV KLSTLEVKTH IVLEMKVSAE 401 450 ENSP00000386862/1-963 IKNDLFSKST VGLQCLRSDS KEGPYVSVPL NCSCGDTVQA QLHNLEPCMY ENSBTAP00000018420/1-963 VKSDIFSKST VGLQCLRSDS KEGPYVPIPL AYSYGDTVQV QLDNLEPCMY ENSTTRP00000005384/1-958 VKSDIFSKST VGLQCLRSDS KEGPYVPIPH TYSYGDTVQA QLDDLEPCMY bmy_03199T0/1-974 VKSDIFSKST VGLQCLRSDS KEGPFVPIPL TYSYGDTVRV QLDNLEPCMY BACU010997/1-963 VKGDIFSKST VGLQCLRSDS KEGPFVPIPL TYSYGDTVRV QLDNLEPCMY 451 500 ENSP00000386862/1-963 VAVVAHGPSI LYPSTVWDFI NKKVTVGLYG PKHIHPSFKT VVTIFGHDCA ENSBTAP00000018420/1-963 LAIVAHGPNI LYPSTVWDFI NKKVTVGLYG PKHIHPSFKT VVTIFGHDCA ENSTTRP00000005384/1-958 LAIVAHGPNI LYPSTVWDFI NKKVTVGLYG PKHIHPSFKT VVTIFGHDCA bmy_03199T0/1-974 LAIVAHGPNI LYPSTVWDFI NKKVTVGLYG PKHIHPSFKT VVTIFGHDCA BACU010997/1-963 LAIVAHGPNI LYPSTVWDFI NKKVTVGLYG PKHIHPSFKT VVTIFGHDCA 501 550 ENSP00000386862/1-963 PKTLLVSEVT RQAPNPAPVA LQLWGKHQFV LSRPQDLKVC MFSNMTNYEV ENSBTAP00000018420/1-963 PKTLLVSEVT RQAPTPAPVA LQLWGKHQFV LSRPQDLQVC VFSNMTNYEV ENSTTRP00000005384/1-958 PKTLLVSEVT RQAPSPAPVA LQLWGKHQF- LYRPQDLRVC MFSNMTNYEV bmy_03199T0/1-974 PKTLLVSEVT RQAPSPAPVA LQLWGKHQFV LSRPQDLRVC MFSNMTNYEV BACU010997/1-963 PKTLLVSEVT RQAPSPAPVA LQLWGKHQFI LSRPQDLRVC MFSNMTNYEV 551 600 ENSP00000386862/1-963 KASEQAKVVR GFQLKLGKVS RLIFPITSQN PNELSDFTLR VQVKDDQEAI ENSBTAP00000018420/1-963 KASEQAKAVR GFQVKLGKVS RLIFPITCQN PSELSDFTLR VQVKDDQEAI ENSTTRP00000005384/1-958 KASEQAKAVR GFQVKLGKVS RLIFSISCHN ASELSDFTLR VQVKDDQEAI bmy_03199T0/1-974 KASEQAKAVR GFQVKLGKVS RLIFPISCHN ASELSDFTLR VQVKDDQEAI BACU010997/1-963 KASEQAKAVR GFQVKLGKVS RLIFPISCHN ASELSDFTLR VQVKDDQEAI 601 650 ENSP00000386862/1-963 LTQFCVQTPQ PPPKSAIKPS GQRRFLKKNE VGKIILSPFA TTTKYPTFQD ENSBTAP00000018420/1-963 LTQFCVQTPQ PPPKSAIKPS GQRRFLKKNE VGKIILSPLA ATTKYPTFQD ENSTTRP00000005384/1-958 LTQFCVQTPQ PPPKSVVKPS GQRRFLKKNE VGKIILSPFA ATTKYPTFQD bmy_03199T0/1-974 LTQFCVQTPQ PPPKSAIKPS GQRRFLKKNE VGKIILSPFA ATTKYPTFQD BACU010997/1-963 LTQFCVQTPQ PPPKSAIKPS GQRRFLKKNE VGKIILSPFA ATTKYPTFQD 651 700 ENSP00000386862/1-963 RPVSSLKFGK LLKTVVRQNK NHYLLEYKKG DGIALLSEER VRLRGQLWTK ENSBTAP00000018420/1-963 RPVSSLKFGK LLKTVVRQSK NHYLLEYKKG DAIALLSEEK IRLKGQLWTK ENSTTRP00000005384/1-958 RPVSSLKFGK LLKTVVRQSK NHYLLEYKKG DAIALLSEEK IRLKGQLWTK bmy_03199T0/1-974 RPVSSLKFGR LLKTVVRQSK NHYLLEYKKG DAIALLSEEK IRLKGQLWTK BACU010997/1-963 RPVSSLKFGR LLKTVVRQSK NHYLLEYKKG DAIALLSEEK IRLKGQLWTK 701 750 ENSP00000386862/1-963 EWYIGYYQGR VGLVHTKNVL VVGRARPSLC SGPELSTSVL LEQILRPCKF ENSBTAP00000018420/1-963 EWYIGYHQGR VGLVHAKNVL VVGKARPSLL AGPELSTSVL LEQILRPCKF ENSTTRP00000005384/1-958 EWYIGYHQGR VGLVHAKNVL VVGKARPSLL SGPELSTSLL LEQILRPCKF bmy_03199T0/1-974 EWYIGYHQGR VGLVHAKNVL VVGKARPSLL SGPELSTAVL LEQILRPCKF BACU010997/1-963 EWYIGYHQGR VGLVHAKNVL VVGKARPSLL SGPELSTAVL LEQILRPCKF 751 800 ENSP00000386862/1-963 LTYIYASVRT LLMENISSWR SFADALGYVN LPLTFFCRAE LDSEPERVAS ENSBTAP00000018420/1-963 LTYIYASVRT LLMENVSSWR SFADALGYGD LPLTFFCRAE LDSEPERVAS ENSTTRP00000005384/1-958 LTYIYASVRT LLMENISSWR SFADALGYGN LPLTFFCRAE LDSEPERVAS bmy_03199T0/1-974 LTYIYASVRT LLMENIGSWR SFADALGYGN LPLTFFCRAE LGSEPERVAS BACU010997/1-963 LTYIYASVRT LLMENISSWR SFADALGYGN LPLTFFCRAE LDSEPERVAS 801 850 ENSP00000386862/1-963 VLEKLKEDCN NTENKERKSF QKELVMALLK MDCQGLVVRL IQDFVLLTTA ENSBTAP00000018420/1-963 VLEKLKEDCN NTDNKDRKSF QKELMMALLK MDCQGLVVRL IQDFVLLTTA ENSTTRP00000005384/1-958 VLEKLKEDCN STENKDRKSF QKELMMALLK MDCQGLVVRL IQDFVLLTTA bmy_03199T0/1-974 VLEKLKEDCN STESKDRKSF QKELMMALLK MDCQGLVVRL IQDFVLLTTA BACU010997/1-963 VLEKLKEDCN STESKDRKSF QKELMMALLK MDCQGLVVRL IQDFVLLTTA 851 900 ENSP00000386862/1-963 VEVAQRWREL AEKLAKVSKQ QMDAYESPHR DRNGVVDSE- ---------- ENSBTAP00000018420/1-963 VEVAQRWREL AEKLAKVSKQ QMDAYESPHR DRNGVVDSE- ---------- ENSTTRP00000005384/1-958 VEVAQRWREL AEKLAKVSKQ QMDAYESPHR DRNGVVDSE- ---------- bmy_03199T0/1-974 VEVAQRWREL AEKLAKVSKQ QMDAYDF-WK DRQACKTSEA EVPRIRASFM BACU010997/1-963 VEVAQRWREL AEKLAKVSKR QMDAYESPHR DRNGVVDSE- ---------- 901 950 ENSP00000386862/1-963 -AMWKPAYDF LLTWSHQIGD SYRDVIQELH LGLDKMKNPI TKRWKHLTGT ENSBTAP00000018420/1-963 -AMWKPAYDF LLTWSHQIGD SYRDVIQELH IGLDKMKNPI TKRWKHLTGT ENSTTRP00000005384/1-958 -AMWKPAYDF LLTWSHQVGD SYRDVIQELH TGLDKMKNPI TKRWKHLTGT bmy_03199T0/1-974 HAMWKPAYDF LLTWSHQIGD SYRDVIQELH IGLDKMKNPI TKRWKHLTGT BACU010997/1-963 -AMWKPAYDF LLTWSHQIGD SYRDVIQELH IGLDKMKNPI TKRWKHLTGT 951 1000 ENSP00000386862/1-963 LILVNSLDVL RAAAFSPADQ DDFVI ENSBTAP00000018420/1-963 LILVNSLDIL RASAFSPVDH DDFVI ENSTTRP00000005384/1-958 LIMVNSLDIL RAAAFSPVDH DDLVI bmy_03199T0/1-974 LILVNSLDIL RAAAFSPVDH DDFVI BACU010997/1-963 LILVNSLDIL RAAAFSPVDH DDFVI