KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:30 2014 Check: 00 .. Name: ENSP00000312081/1-659 Len: 728 Check: 4667 Weight: 1.00 Name: ENSBTAP00000018426/1-649 Len: 728 Check: 9823 Weight: 1.00 Name: bmy_07826T0/1-717 Len: 728 Check: 2149 Weight: 1.00 Name: ENSTTRP00000001763/1-644 Len: 728 Check: 3253 Weight: 1.00 Name: BACU003531/1-624 Len: 728 Check: 8716 Weight: 1.00 // 1 50 ENSP00000312081/1-659 ---------- ---------- ---------- ---------- ----MALVTV ENSBTAP00000018426/1-649 ---------- ---------- ---------- ---------- ----MALVTV bmy_07826T0/1-717 SALEEVPGPG GSGLSFLVLR GRDCPWGCGR VQWPCRPRCS RPGSMALVTV ENSTTRP00000001763/1-644 ---------- ---------- ---------- ---------- ----MALVTV BACU003531/1-624 ---------- ---------- ---------- ---------- ----MALVTV 51 100 ENSP00000312081/1-659 SRSPPGSGAS TPVGPW-DQA VQRRSRLQRR QSFAVLRGAV LGLQDGGDND ENSBTAP00000018426/1-649 SRSPPASGHS TPVGPTQDPV SQRRSRLQRR QSFAVLRGAV LGLQDGGDDG bmy_07826T0/1-717 SRSPPAGGHS TPVGPTQDQV SQRRSRLQRR QSFAVLHGAV LGLQDGGDDG ENSTTRP00000001763/1-644 SRSPPAGGHS TPVGPT-DQV SQRRSRLQRR QSFAVLGGAV LGLQDGGDDG BACU003531/1-624 SRSPPAGGHS TPVGPT-DQV SQRRSRLQRR QSFAVLRGAV LGLQDGGDDG 101 150 ENSP00000312081/1-659 DAAEASSEPT EKAPSEEELH GDQTDFGQGS QSPQKQEEQR QHLHLMVQLL ENSBTAP00000018426/1-649 DASRPSPEPA EEPPGEGQPH GDQTDNGHGP PSPGRQ-EQS QHLCLMVELL bmy_07826T0/1-717 DAAKASSEPV EEPPGEEQPH GDQTDDGHGP HSPRKQ-EQS QHLRLMVGLL ENSTTRP00000001763/1-644 DAAKASSEPV EDPPGEEQPH GDQTDDGHGP QSLRKQ-EQS QHLRLMVGLL BACU003531/1-624 DAAKASSEPV EEPPGEEQPH GDQTDDGHGP HSPRKQ-EQS QHLCLMVGLL 151 200 ENSP00000312081/1-659 RPQDDIRLAA QLEAPRPPRL RYLLVVSTRE GEGLSQDETV LLGVDFPDS- ENSBTAP00000018426/1-649 RPQDDIRLAA QLEAARAPRL RYLLVVSTR- -EGLSRDETV LLGVDFPDS- bmy_07826T0/1-717 RPQDDIRLAA QLEAARPARL RYLLVVSTR- -ERLSQDETV LLGVDFPDSS ENSTTRP00000001763/1-644 RPQDDIRLAA QLEAARPARL RYLLVVSTR- -ERLSQDETV LLGVDFPDS- BACU003531/1-624 RPQDDIRLAA QLEAARPARL RYLLVVSTR- -ERLSQDETV LLGVDFPDS- 201 250 ENSP00000312081/1-659 --SSPSCTLG LVLPLWSDTQ VYLDGDGGFS VTSGGQSRIF KPISIQTMWA ENSBTAP00000018426/1-649 --SSPSCTLG LVLPLWSDTQ VYLDGDGGFS VTSGGQSRIF KPVSIQTMWA bmy_07826T0/1-717 SPSSPSCTLG LVLPLWSDTQ VYLDGDGGFS VTSGGQSRIF KPVCIQTMWA ENSTTRP00000001763/1-644 --SSPSCTLG LVLPLWSDTQ VYLDGDGGFS VTSGGQSRIF KPVCIQTMWA BACU003531/1-624 ---------- ---------- ------RGFS VTSGGQSRIF KPVCIQTMWA 251 300 ENSP00000312081/1-659 TLQVLHQACE AALGSGLVPG GSALTWASHY QERLNSEQSC LNEWTAMADL ENSBTAP00000018426/1-649 TLQVLHQACE AALSSGLVPG GSALAWASHY QDRLSSDQSC LNEWMAMADL bmy_07826T0/1-717 TLQVLHQACE VALGSGLVPG GSALAWASHY QDRLSSDQSC LNEWMAMADL ENSTTRP00000001763/1-644 TLQVLHQACE AALGSGLVPG GSALAWASHY QDRLSSDQSC LNEWMVMADL BACU003531/1-624 TLQVLHQACE AALGSGLVPG GSALAWASHY QDRLSSDQSC LNEWMAMADL 301 350 ENSP00000312081/1-659 ESLRPPSAEP GGS------- ---------- -SEQEQMEQA IRAELWKVLD ENSBTAP00000018426/1-649 ESLRPPCVES SRP------- ---------- -SEQEQMEQA IRAELWEVLD bmy_07826T0/1-717 ESLRPPSIEP GRSLFSCLSC SHMPGLSFSA LMGQSIVLRG PRGKAGASGT ENSTTRP00000001763/1-644 ESLRPPSIEP GRP------- ---------- -SGQEQMEQ- IWAELWEVLD BACU003531/1-624 ESLRPPSIEP GRT------- ---------- -SGQEQMEEA IRAELWEVLD 351 400 ENSP00000312081/1-659 VSDLESVTSK ---EIRQALE LRLGLPLQQY RDFIDNQMLL LVAQRDRASR ENSBTAP00000018426/1-649 TSDLDNVTSK ---EIRQALE LRLGCPLQQY RDFIDNQMLL LMAQQDRASR bmy_07826T0/1-717 SQGAPSLSSP SCLQIRQALE LRLGCPLQQY RDFIDNQMLL LMAQQDRASR ENSTTRP00000001763/1-644 SSDLQSITSK ----IRQALE LRLGCPLQQY RDFIDNQMLL LMAQQDRASR BACU003531/1-624 SSDLESITSK ---EIRQALE LRLGCPLQQY RDFIDNQMLL LMAQQDRASR 401 450 ENSP00000312081/1-659 IFPHLYLGSE WNAANLEELQ RNRVTHILNM AREIDNFYPE RFTYHNVRLW ENSBTAP00000018426/1-649 IFPHLYLGSE WNAANLEELQ RNRVSHILNM AREIDNFYPE RFTYHNVRLW bmy_07826T0/1-717 IFPHLYLGSE WNAANLEELQ RNRVSHILNM AREIDNFYPE RFTYHNVRLW ENSTTRP00000001763/1-644 IFPHLYLGSE WNAANLEELQ RNRINHILNI THKINNFYPE RFTYHNVRL- BACU003531/1-624 IFPHLYLGSE WNAANLEELQ RNRVSHILNM AREIDNFYPE RFTYHNVRLW 451 500 ENSP00000312081/1-659 DEESAQLLPH WKETHRFIEA ARAQGTHVLV HCKMGVSRSA ATVLAYAMKQ ENSBTAP00000018426/1-649 DEESAQLLPH WKETHRFVEA ARAQGTRVLV HCKMGVSRSA ATVIAYAMKQ bmy_07826T0/1-717 DEESAQLLSH WKETHRFVEA ARAQGTRVLV HCKMGVSRSA ATVIAYAMKQ ENSTTRP00000001763/1-644 NKKSAQLLPH -KKTHHFVEA TKAQGTRVLV HCKMGVSRSA ATVIAYAMKQ BACU003531/1-624 DEESAQLLSH WKETHCFVEA ARAQGTRVLV HCKMGVSRSA ATVIAYAMKQ 501 550 ENSP00000312081/1-659 YECSLEQALR HVQELRPIAR PNPGFLRQLQ IYQGILTASR QSHVWEQKVG ENSBTAP00000018426/1-649 YGWSLEQALR HVQELRPIAR PNPGFLRQLQ TYQGILTASR QSHVWEQKAG bmy_07826T0/1-717 YGWSLEQALR HVQELRPIAR PNPGFLRQLQ TYQGILTASR QSHVWEQKVG ENSTTRP00000001763/1-644 YGWSLEQALR HVQELRPIAR PNPGFLRQLQ TYQGILTASR QSHVWEQKVG BACU003531/1-624 YGWSLEQALR HVQELRPIAR PNPGFLRQLQ TYQGILTASR QSHVWEQKVG 551 600 ENSP00000312081/1-659 GVSPEEHPAP EVSTPFPPLP PEPEGGGEEK VVGMEESQAA PKEEPGPRPR ENSBTAP00000018426/1-649 GASPEEPLAP EVSTPFPPLQ PEPGGSGELS VMGSEDSQAA PKEAPGSRPR bmy_07826T0/1-717 GASPEEPLAP EVSTPFPPLQ PEPGGSGELN VVGLEESQAA PEEEPGSRPR ENSTTRP00000001763/1-644 GASPEEPLAP EVSTPFPPLQ PEPGGSGELN VVGLEESQAA PKEEPGSRPR BACU003531/1-624 GASPEEPLAP EVSTPFPPLQ PEPGGSGELN VVGLEESQAA PEEEPGSRPR 601 650 ENSP00000312081/1-659 INLRGVMRSI SLLEPSLELE STSETSDMPE VFSSHESSHE EPLQPFPQLA ENSBTAP00000018426/1-649 INLRGVMRSI SLLEPPSELD SPSGDADLPE VFSSKESSDE DPPQPFPQPS bmy_07826T0/1-717 INLRGVMRSI SLLEPSSELE STSGDGDLPE VFSPKEFSDE DTPQPFPQLS ENSTTRP00000001763/1-644 INLRGVMRSI SLLEPSSELE STSGDGDLPE VFSPEEFSDE DPPQPFPQLS BACU003531/1-624 INLRGVMRSI SLLEPSSELE STSGDGDLPE VFSPKEFSDE DPPQPFPQLS 651 700 ENSP00000312081/1-659 RTKGGQQVDR GPQPALKSRQ SVVTLQGSAV VANRTQAFQE QEQGQGQGQG ENSBTAP00000018426/1-649 SAKGGRQVHR GPWPALKSRQ SVAALNSAAL VASRTRAFQE QGEAG----- bmy_07826T0/1-717 SAKGGQQARK GPWPALKSRQ SVVALNNAAL VASRTRAFQE QRKAG----- ENSTTRP00000001763/1-644 SAKGGHQARK GPWPALKSRQ SVVALNSAAL VASRTRAFQE QRKAG----- BACU003531/1-624 SAKGGQQARK GPWLALKSRQ SVVALHNAAL VASRTRAFQE QRKAG----- 701 750 ENSP00000312081/1-659 EPCISSTPRF RKVVRQASVH DSGEEGEA ENSBTAP00000018426/1-649 ---CASTPRH QKIVRQASVD SSGEEGEV bmy_07826T0/1-717 ---CPSTPRH QKVVRQASVD DSDEEGEV ENSTTRP00000001763/1-644 ---CPSTPRH QKVVRQPSVD DSGEEGEV BACU003531/1-624 ---CPSTPRH QQVVRQASVD DSGEEGEV