KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:32 2014 Check: 00 .. Name: bmy_15440T0/1-709 Len: 1260 Check: 23 Weight: 1.00 Name: ENSTTRP00000008595/1-1218 Len: 1260 Check: 3076 Weight: 1.00 Name: BACU012163/1-1162 Len: 1260 Check: 7659 Weight: 1.00 Name: ENSP00000337572/1-1220 Len: 1260 Check: 5428 Weight: 1.00 Name: ENSBTAP00000018432/1-1153 Len: 1260 Check: 4735 Weight: 1.00 // 1 50 bmy_15440T0/1-709 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008595/1-1218 MAGAGGQHHP SGAAGGAAAA AGAAVAPATA SAGPGEDSSD SEAEQEGPQK BACU012163/1-1162 ---------- ---------- ---------- ---------- ---------- ENSP00000337572/1-1220 MAGAGGQHHP PGAAGGAAAG AGAAVTSAAA SAGPGEDSSD SEAEQEGPQK ENSBTAP00000018432/1-1153 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_15440T0/1-709 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008595/1-1218 LIRKVSTSGQ IRTKTSIKEG QLLKQTSSFQ RWKKRYFKLR GRTLYYAKDS BACU012163/1-1162 ---------- ----TSIKEG QLLKQTSSFQ RWKKRYFKLR GRTLYYAKDS ENSP00000337572/1-1220 LIRKVSTSGQ IRTKTSIKEG QLLKQTSSFQ RWKKRYFKLR GRTLYYAKDS ENSBTAP00000018432/1-1153 ---------- ----TSIKEG QLLKQTSSFQ RWKKRYFKLR GRTLYYAKDS 101 150 bmy_15440T0/1-709 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008595/1-1218 KSLIFDEVDL SDASVSEAST KNANNSFTII TPFRRLMLCA ENRKEMEDWI BACU012163/1-1162 KSLIFDEVDL SDASVAEAST KNANNSFTII TPFRRLMLCA ENRKEMEDWI ENSP00000337572/1-1220 KSLIFDEVDL SDASVAEAST KNANNSFTII TPFRRLMLCA ENRKEMEDWI ENSBTAP00000018432/1-1153 KSLIFDEVDL SDASVAEAST KNANNSFTII TPFRRLMLCA ENRKEMEDWI 151 200 bmy_15440T0/1-709 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008595/1-1218 SSLKSVQTRE TYEVAQFNVE HFSGMHNWYA CSHARPTFCN VCRESLSGVT BACU012163/1-1162 SSLKSVQTRE PYEVAQFNVE HFSGMHNWYA CSHARPTFCN VCRESLSGVT ENSP00000337572/1-1220 SSLKSVQTRE PYEVAQFNVE HFSGMHNWYA CSHARPTFCN VCRESLSGVT ENSBTAP00000018432/1-1153 SSLKSVQTRE PYEVAQFNVE HFSGMHNWYA CSHARPTFCN VCRESLSGVT 201 250 bmy_15440T0/1-709 ---MSASLC- ---------- ---------- ---------- ---------- ENSTTRP00000008595/1-1218 SHGLSCEVCK FKAHKRCAVR ATNNCKWTTL ASIGKDIIEN EDGLAMPHQW BACU012163/1-1162 SHGLSCEVCK FKAHKRCAVR ATNNCKWTTL ASIGKDIIEN EDGLAMPHQW ENSP00000337572/1-1220 SHGLSCEVCK FKAHKRCAVR ATNNCKWTTL ASIGKDIIED EDGVAMPHQW ENSBTAP00000018432/1-1153 SHGLSCEVCK FKAHKRCAVR AMNNCKWTTL ASIGKDIIEN EDGVAMPHQW 251 300 bmy_15440T0/1-709 ---------- VNLSEVSCGA VF-------- ---------- ---------- ENSTTRP00000008595/1-1218 LEGNLPVSAK CAVCEKTCGS VLRLQDWRCL WCKTMVHTAC KDLYHPICPL BACU012163/1-1162 LEGNLPVSAK CAVCEKTCGS VLRLQDWRCL WCKTMVHTAC KDLYHPICPL ENSP00000337572/1-1220 LEGNLPVSAK CAVCDKTCGS VLRLQDWKCL WCKTMVHTAC KDLYHPICPL ENSBTAP00000018432/1-1153 LEGNLPVSAK CAVCDKTCGS VLRLQDWRCL WCRTMVHTAC KDLYHPVCPL 301 350 bmy_15440T0/1-709 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008595/1-1218 GQCRVSVIPP IALNSTDSDG FCRATFSFCV SPLLVFVNSK SGDNQGVKFL BACU012163/1-1162 GQCRVSVIPP IALNSTDSDG FCRATFSFCV SPLLVFVNSK SGDNQGVKFL ENSP00000337572/1-1220 GQCKVSIIPP IALNSTDSDG FCRATFSFCV SPLLVFVNSK SGDNQGVKFL ENSBTAP00000018432/1-1153 GQCKVSVIPP IALNSTDSDG FCRATFSFCV SPLLVFVNSK SGDNQGVKFL 351 400 bmy_15440T0/1-709 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008595/1-1218 RRFKQLLNPA QVFDLMNGGP HLGLRLFQKF DNFRILVCGG DGSVGWVLSE BACU012163/1-1162 RRFKQLLNPA QVFDLMNGGP HLGLRLFQKF DNFRILVCGG DGS------- ENSP00000337572/1-1220 RRFKQLLNPA QVFDLMNGGP HLGLRLFQKF DNFRILVCGG DGSVGWVLSE ENSBTAP00000018432/1-1153 RRFKQLLNPA QVFDLMNGGP HLGLRLFQKF DNFRILVCGG DGSVGWVLSE 401 450 bmy_15440T0/1-709 --------QC QLGVLPLGTG NDLARVLGWG GSYDDDTQLP QILEKLERAS ENSTTRP00000008595/1-1218 IDKLNLNKQC QLGVLPLGTG NDLARVLGWG GSYDDDTQLP QILEKLERAS BACU012163/1-1162 ---------- QLGVLPLGTG NDLARVLGWG GSYDDDTQLP QILEKLERAS ENSP00000337572/1-1220 IDKLNLNKQC QLGVLPLGTG NDLARVLGWG GSYDDDTQLP QILEKLERAS ENSBTAP00000018432/1-1153 IDKLNLNKQC QLGVLPLGTG NDLARVLGWG GSYDDDTQLP QILEKLERAS 451 500 bmy_15440T0/1-709 TKMLDRWSIM TYELKLPAKA SLLPEPTEAS EEFYRKESLP SSVSFLFFQM ENSTTRP00000008595/1-1218 TKMLDRWSIM TYELKLPAKA SLLPEPPEAS EEFY------ ---------M BACU012163/1-1162 TKMLDRWSIM TYELKLPAKA SLLPEPPEAS EEFY------ ---------M ENSP00000337572/1-1220 TKMLDRWSIM TYELKLPPKA SLLPGPPEAS EEFY------ ---------M ENSBTAP00000018432/1-1153 TKMLDRWSIM TYELKLPPKA SLLPEPPEAS EEFY------ ---------M 501 550 bmy_15440T0/1-709 TIYEDSVAAH LTKILNSDEH AVVISSAKVL CETVKDFVAK VEKAHEKTLE ENSTTRP00000008595/1-1218 TIYEDSVAAH LTKILNSDEH AVVISSAKVL CETVKDFVAK VEKAHEKTLE BACU012163/1-1162 TIYEDSVAAH LTKILNSDEH AVVISSAKVL CETVKDFVAK VEKAHEKTLE ENSP00000337572/1-1220 TIYEDSVATH LTKILNSDEH AVVISSAKTL CETVKDFVAK VEKTYDKTLE ENSBTAP00000018432/1-1153 TIYEDSVAAH LTKILNSDEH AVVISSTKIL CETVKDFVAK VEKAHEKTLE 551 600 bmy_15440T0/1-709 KAVAADAVAN KCSVLNEKLE QLLQALHTDS QASPVLPGIS PLIVEEDPVE ENSTTRP00000008595/1-1218 RAVAADAVAN KCSVLNEKLE QLLQALHTDS QASPVLPGIS PLIVEEDPVE BACU012163/1-1162 KAVAADAVAN KCSVLNEKLE QLLQALHTDS QASPVLPGIS PLIVEEDPAE ENSP00000337572/1-1220 NAVVADAVAS KCSVLNEKLE QLLQALHTDS QAAPVLPGLS PLIVEEDAVE ENSBTAP00000018432/1-1153 KAVAADAVAN KCSILNEKLE QLLQALHIES QAGPVLPGVS PLRV-EDAVE 601 650 bmy_15440T0/1-709 SSSEESLCES KEQLLDDXTK PSSQKTVKPR EIMLRANSLK KAVRQVIEEA ENSTTRP00000008595/1-1218 SSSEESLCES KEQLLDDTTK PSSQKTVKPR EIMLRANSLK KAVRQVIEEA BACU012163/1-1162 SSSEESLWES KEQLLDDTTK PSSQKTVKPR EIMLRANSLK KAVRQVIEEA ENSP00000337572/1-1220 SSSEESLGES KEQLGDDVTK PSSQKAVKPR EIMLRANSLK KAVRQVIEEA ENSBTAP00000018432/1-1153 SSSEESLCES KEHLLDDTTK PSSQKAVKPR EIMLRANSLK KAVRQVIEEA 651 700 bmy_15440T0/1-709 GKVMDDQTVH SSEPVNQSFD YDSTETDESK DESKEDDAKA SLTVKTAPRS ENSTTRP00000008595/1-1218 GKVMDDQTVH SSEPVNQSFD YDSTETDESK DESKEDDAKA SLTVKTAPRS BACU012163/1-1162 GKVMDDQTVH SSEPVNQSFD YDSTETDESK DESKEDDAKA SLTVKTAPRS ENSP00000337572/1-1220 GKVMDDPTVH PCEPANQSSD YDSTETDESK EEAKDDGAKE SITVKTAPRS ENSBTAP00000018432/1-1153 RKVMDDQPVH SSELVNQSFD YDSTETDDSK DELKEDDAKE SLTVKGAPRS 701 750 bmy_15440T0/1-709 PDGRA--SRS QTDSGSGPAV AASKENLPVL NTRIICPGLR AGLAASIAGS ENSTTRP00000008595/1-1218 PDGRA--SRS QTDSGSGPAV AASKENLPVL NTRIICPGLR AGLAASIAGS BACU012163/1-1162 PDGRA--SRS QTDSGSGPAV AASKENLPVL NTRIICPGLR AGLAASIAGS ENSP00000337572/1-1220 PDARASYGHS QTDSVPGPAV AASKENLPVL NTRIICPGLR AGLAASIAGS ENSBTAP00000018432/1-1153 PDGRA--GRS QTDSGPGAPV AASKENLPVL NTRIICPGLR AGLAASIAGS 751 800 bmy_15440T0/1-709 SIINKMLLAN IDPFGATPFI DPDPDSVDGY SEKCVMNNYF GIGLDAKISL ENSTTRP00000008595/1-1218 SIINKMLLAN IDPFGATPFI DPDPDSVDGY SEKCVMNNYF GIGLDAKISL BACU012163/1-1162 SIINKMLLAN IDPFGATPFI DPDPDSVDGY SEKCVMNNYF GIGLDAKISL ENSP00000337572/1-1220 SIINKMLLAN IDPFGATPFI DPDLDSVDGY SEKCVMNNYF GIGLDAKISL ENSBTAP00000018432/1-1153 SIINKMLLAN IDPFGATPFI DPDPDSVDGY SEKCVMNNYF GIGLDAKISL 801 850 bmy_15440T0/1-709 EFNNKREEHP EKCRSRTKNL MWYGVLGTRE LLQRSYKNLE QRVQLE---- ENSTTRP00000008595/1-1218 EFNNKREEHP EKCRSRTKNL MWYGVLGTRE LLQRSYKNLE QRVQLECDGQ BACU012163/1-1162 EFNNKREEHP EKCRSRTKNL MWYGVLGTRE LLQRSYKNLE QRVQLECDGQ ENSP00000337572/1-1220 EFNNKREEHP EKCRSRTKNL MWYGVLGTRE LLQRSYKNLE QRVQLECDGQ ENSBTAP00000018432/1-1153 EFNNKREEHP EKCRSRTKNL MWYGVLGTRE LLQRSYKNLE QRVQLECDGQ 851 900 bmy_15440T0/1-709 ---------- ---------- ---------- --IFAAPSFD DKILEVVAIF ENSTTRP00000008595/1-1218 YIPLPSLQGI AVLNIPSYAG GTNFWGGTKE DDIFAAPSFD DKILEVVAIF BACU012163/1-1162 YIPLPSLQGI AVLNIPSYAG GTNFWGGTKE DDIFAAPSFD DKILEVVAIF ENSP00000337572/1-1220 YIPLPSLQGI AVLNIPSYAG GTNFWGGTKE DDIFAAPSFD DKILEVVAIF ENSBTAP00000018432/1-1153 YIPLPSLQGI AVLNIPSYAG GTNFWGGTKE DDIFAAPSFD DKILEVVAIF 901 950 bmy_15440T0/1-709 DSVQMAVSRV IKLQHHRIAQ CRTVKITIFG DEGVPVQVDG EAWVQPPGII ENSTTRP00000008595/1-1218 DSVQMAVSRV IKLQHHRIAQ CRTVKITIFG EEGVPVQVDG EAWVQPPGII BACU012163/1-1162 DSVQMAVSRV IKLQHHRIAQ CRTVKITIFG DEGVPVQVDG EAWVQPPGII ENSP00000337572/1-1220 DSMQMAVSRV IKLQHHRIAQ CRTVKITIFG DEGVPVQVDG EAWVQPPGII ENSBTAP00000018432/1-1153 DSVQMAVSRV IKLQHHRIAQ CRTVKITIFG DEGVPVQVDG EAWVQPPGII 951 1000 bmy_15440T0/1-709 KIVHKNRAQM LTRDRHL--- -----NMLTS DSRSNLF--- -YIQDLGKLS ENSTTRP00000008595/1-1218 KIVHKNRAQM LTRDRAFEST LKSWEDKQKC DSGKPVLRTH LYIQHAVDLA BACU012163/1-1162 KIVHKNRAQM LTRDRAFEST LKSWEDKQKC DSGKPVLRTH LYIQHAVDLA ENSP00000337572/1-1220 KIVHKNRAQM LTRDRAFEST LKSWEDKQKC DSGKPVLRTH LYIHHAIDLA ENSBTAP00000018432/1-1153 KIVHKNRAQM LTRDRAFEST LKSWEDKQKC DSGKPVLRTH LYIQHAADLA 1001 1050 bmy_15440T0/1-709 SAQRSCLFIC LIFA----FR ICDAATIHCL LEQELAHAVN ACSHALNKAN ENSTTRP00000008595/1-1218 TEEVSQMQLC SQAAEELITX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU012163/1-1162 TEEVSQMQLC SQAAEELITR ICDAATIHCL LEQELAHAVN ACSHALNKAN ENSP00000337572/1-1220 TEEVSQMQLC SQAAEELITR ICDAATIHCL LEQELAHAVN ACSHALNKAN ENSBTAP00000018432/1-1153 TEEVSQMQLC SQAAEELITR ICDAATIHCL LEQELAHAVN ACSHALNKAN 1051 1100 bmy_15440T0/1-709 PRFPESLTRD TATEIAINVK ALYNETESLL VGRVPLQLES PHEERVSNAL ENSTTRP00000008595/1-1218 XXXXXSLTRD TATEIAINVK ALYNETESLL VGRVPLQLES PHEERVSNAL BACU012163/1-1162 PRFPESLTRD TATEIAINVK ALYNETESLL VGRVPLQLES PHEERVSNAL ENSP00000337572/1-1220 PRCPESLTRD TATEIAINVK ALYNETESLL VGRVPLQLES PHEERVSNAL ENSBTAP00000018432/1-1153 PRFPESLTRD TATEIAINVK ALYNETESLL VGRVPLQLES PHEERVSNAL 1101 1150 bmy_15440T0/1-709 HSVEVELQKL TEIPWLYYIL HPNEDE---- ---------- ---------- ENSTTRP00000008595/1-1218 HSVEVELQKL TEIPWLYYIL HPNEDEEPPM DCTKRNSRST VFRIVPKFKK BACU012163/1-1162 HSVEVELQKL TEIPWLYYIL HPNEDEEPPM DCTKRNSRST VFRIVPKFKK ENSP00000337572/1-1220 HSVEVELQKL TEIPWLYYIL HPNEDEEPPM DCTKRNNRST VFRIVPKFKK ENSBTAP00000018432/1-1153 HSVEVELQKL TEIPWLYYIL HPNEDEEPPM DCTKRNSRST VFRIVPKFKK 1151 1200 bmy_15440T0/1-709 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008595/1-1218 EKVQKQKTSS QAVQKWGTEE VAAWLDLLNL GEYKEIFIRH DIRGAELLHL BACU012163/1-1162 EKVQKQKTSS QAVQKWGTEE VAAWLDLLNL GEYKEIFIRH DIRGAELLHL ENSP00000337572/1-1220 EKVQKQKTSS QPVQKWGTEE VAAWLDLLNL GEYKDIFIRH DIRGAELLHL ENSBTAP00000018432/1-1153 EKVQKQKTSS QPVQKWGTEE VAAWLDLLNL GEYKEIFIRH DIRGAELLHL 1201 1250 bmy_15440T0/1-709 ------DLGI PKVGHMK--- ---------- --------RI LQGIKELGRS ENSTTRP00000008595/1-1218 ERRDLKDLGI PKVGHMK--- ---------- --------RI LQGIKELGRS BACU012163/1-1162 ERRDLKVFPL CYSSALKIFL AKQTPFSCTV LFCAYSLAYV MQTCSNLICI ENSP00000337572/1-1220 ERRDLKDLGI PKVGHVK--- ---------- --------RI LQGIKELGRS ENSBTAP00000018432/1-1153 ERRDLKDLGI PKVGHVK--- ---------- --------RI LQGIKELERS 1251 1300 bmy_15440T0/1-709 TPPV------ ENSTTRP00000008595/1-1218 TPQSEV---- BACU012163/1-1162 VLWSEFLVCF ENSP00000337572/1-1220 TPQSEV---- ENSBTAP00000018432/1-1153 TLQPEV----