KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:04:35 2014 Check: 00 ..
Name: ENSP00000424757/1-1286 Len: 1408 Check: 3567 Weight: 1.00
Name: ENSBTAP00000018438/1-1281 Len: 1408 Check: 2936 Weight: 1.00
Name: ENSTTRP00000009208/1-1277 Len: 1408 Check: 1689 Weight: 1.00
Name: bmy_15279T0/1-644 Len: 1408 Check: 9159 Weight: 1.00
Name: BACU015217/1-1236 Len: 1408 Check: 8074 Weight: 1.00
//
1 50
ENSP00000424757/1-1286 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000018438/1-1281 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000009208/1-1277 ---------- ---------- ---------- ---------- ----------
bmy_15279T0/1-644 MALAAVDFVQ FVGMHTEVGL KSEPVTGPPT AGPRLWLWRA LVVVAYLLRC
BACU015217/1-1236 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000424757/1-1286 -----MEKYV RLQKIGEGSF GKAILVKSTE DGRQYVIKEI NISRMSSKER
ENSBTAP00000018438/1-1281 -----MEKYI RVQKIGEGSF GKAILVRSTE DGRQYVIKEI NISRMSNKER
ENSTTRP00000009208/1-1277 -----MEKYV RVQKIGEGSF GKAILVKSIE DGRQYVIKEI NISSMSSKER
bmy_15279T0/1-644 LRKRTMEKYV RVQKIGEGSF GKAILVKSME DGRQYVIKEI NISSMSSKER
BACU015217/1-1236 -----MEKYV RVQKIGEGSF GKAILVKSVE DGRQYVIKEI NISSMSSKER
101 150
ENSP00000424757/1-1286 EESRREVAVL ANMKHPNIVQ YRESFEENGS LYIVMDYCEG GDLFKRINAQ
ENSBTAP00000018438/1-1281 EESRREVAVL ANMRHPNIVQ YRESFEENGS LYIVMDYCEG GDLFKRINAQ
ENSTTRP00000009208/1-1277 EESRREVAVL ANMKHPNIVQ YRESFEENGS LYIVMDYCEG GDLFKRINAQ
bmy_15279T0/1-644 EESRREVAVL ANMKHPNIVQ YRESFEENGS LYIVMDYCEG GDLFKRINAQ
BACU015217/1-1236 EESRREVAVL ANMKHPNIVQ YRESFEENGS LYIVMDYCEG GDLFKRINAQ
151 200
ENSP00000424757/1-1286 KGVLFQEDQI LDWFVQICLA LKHVHDRKIL HRDIKSQNIF LTKDGTVQLG
ENSBTAP00000018438/1-1281 KGVLFQEDQI LDWFVQICLA LKHVHDRKIL HRDIKSQNIF LTRDGTIQLG
ENSTTRP00000009208/1-1277 KGILFQEDQI LDWFVQICLA LKHVHDRKIL HRDIKSQNIF LTKDGTIQLG
bmy_15279T0/1-644 KGILFQEDQI LDWFVQICLA LKHVHDRKIL HRDIKSQNIF LTKDGTIQLG
BACU015217/1-1236 KGILFQEDQI LDWFVQICLA LKHVHDRKIL HRDIKSQNIF LTKDGTIQLG
201 250
ENSP00000424757/1-1286 DFGIARVLNS TVELARTCIG TPYYLSPEIC ENKPYNNKSD IWALGCVLYE
ENSBTAP00000018438/1-1281 DFGIARVLNS TVELARTCIG TPYYLSPEIC ENKPYNNKSD IWALGCVLYE
ENSTTRP00000009208/1-1277 DFGIARVLNS TVELVRTCIG TPYYLSPEIC ENKPYNNKSD IWALGCVLYE
bmy_15279T0/1-644 DFGIARVLNS TVELVRTCIG TPYYLSPEIC ENKPYNNKSD IWALGCVLYE
BACU015217/1-1236 DFGIARVLNS TVELVRTCIG TPYYLSPEIC ENKPYNNKSD IWALGCVLYE
251 300
ENSP00000424757/1-1286 LCTLKHA--- ---------- ---------F EAGSMKNLVL KIISGSFPPV
ENSBTAP00000018438/1-1281 MCTLKHA--- ---------- ---------F EAGNMKNLVL KIISGSFPPV
ENSTTRP00000009208/1-1277 XCTLKHA--- ---------- ---------X XXXXXXXXXX XXXXXXXXXX
bmy_15279T0/1-644 MCTLKHAEKS IDCQSDMAWW ILDLYFKELF EAGNMKNLVL KIISGSFPPV
BACU015217/1-1236 MCTLKHA--- ---------- ---------F EAGNMKNLVL KIISGSFPPV
301 350
ENSP00000424757/1-1286 SLHYSYDLRS LVSQLFKRNP RDRPSVNSIL EKGFIAKRIE KFLSPQ----
ENSBTAP00000018438/1-1281 SLHYSYDLRS LLSQLFKRNP RDRPSVNSIL EKGFIAKRIE KFLSPQ----
ENSTTRP00000009208/1-1277 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX----
bmy_15279T0/1-644 SLHYSYDLRS LLSQLFKRNP RDRPSVNSIL EKGFIAKRIE KFLSPQDLSK
BACU015217/1-1236 SLHYSYDLRS LLSQLFKRNP RDRPSVNSIL EKGFIAKRIE KFLSPQ----
351 400
ENSP00000424757/1-1286 -------LIA EEFCLKTFSK FGSQPIPAKR PASGQNSISV MPAQKITKPA
ENSBTAP00000018438/1-1281 -------LIA EEFCLKTFSK FGAQPLPAKR PASGQSLASI MSAQKITKPA
ENSTTRP00000009208/1-1277 -------XXX XXXXXXXXXX XXXXXXXXKR PGSGQSLASV VSAQKITKPA
bmy_15279T0/1-644 IYIKSISLIA EEFCLKTFSR FGAQPIPAKR PGSGQSLASV VSAQKITKPA
BACU015217/1-1236 -------LIA EEFCLKTFSR FGAQPIPAKR PGSGQSLASV VSAQKITKPA
401 450
ENSP00000424757/1-1286 AKYGIPLAYK KYGDKKLHEK KPLQKHK--- ---------- ----------
ENSBTAP00000018438/1-1281 AKYGIPLTNK KYIDKKLHER KPLQKYK--- ---------- ----------
ENSTTRP00000009208/1-1277 AKYGVPLTYK KYGDKKLHEK KPLQKHK--- ---------- ----------
bmy_15279T0/1-644 AKYGVPLMYK KYGDKKLHEK KPLQKHKQTY FVPRKSEASF RFKFHLLSFE
BACU015217/1-1236 AKYGVPLTYK KYGDKKLHEK KPLQKHK--- ---------- ----------
451 500
ENSP00000424757/1-1286 ---------- QAHQTPEKRV NTGEERRKIS EEAARKRRLE FIEKEKKQKD
ENSBTAP00000018438/1-1281 ---------- QAHQTPVKKV NPGEERRKLF EEAPRKRRLE LTEKEKKSKD
ENSTTRP00000009208/1-1277 ---------- QAHQSPVKKV NPGEERRKLF EEPVRKRRLE LNEKEKKQKD
bmy_15279T0/1-644 LKPNIVSLFV QAHQSPVKKV NPGEERRKLF EEPARKRRLE LNEKEKKRKD
BACU015217/1-1236 ---------- QAHQSPVKKV NPGEERRKLF EEPARKRRLE LNEKERKQKD
501 550
ENSP00000424757/1-1286 QIISLMKAEQ MKRQEKERLE RINRAREQGW RNVLSAGGSG EVKAPFLGSG
ENSBTAP00000018438/1-1281 Q-VSLLKAEQ VKRQEKQRLE RINRAREQGW RNVLSAGGSG EMKAPLLGSG
ENSTTRP00000009208/1-1277 Q-ISLMKAEQ MKRQEKERLE KINRAREQGW RNVLSAGGSG EMKAPLFGSG
bmy_15279T0/1-644 Q-ISLMKAEQ MKRQEKERLE KINRAREQGW RNVLSAGGSG EMKAPLFGSG
BACU015217/1-1236 Q-ISLMKAEQ MKRQEKERLE KINRAREQGW RNVLSAGGSG EMKAPLFGSG
551 600
ENSP00000424757/1-1286 GTIAPSSFSS RGQYEHYHAI FDQMQQQRAE DNEAKWKREI YGRGLPERGI
ENSBTAP00000018438/1-1281 GAMAPSSFSS RGQYEHYHAI FDQMQQQRAE DNEAKWKGEI HGQRLPERGI
ENSTTRP00000009208/1-1277 GAVAPSSFSS RGQYEHYHAI FDQMQQQRAE DNEAKWKGER HGRRLPERGI
bmy_15279T0/1-644 GAVAPSSFSS RGQYEHYHAI FDQMQQQRAG DNEAKWKGEI HGRRLPER--
BACU015217/1-1236 GAVAPSPFSS RGQYEHYHAI FDQMQQQRAG DNEAKWKGEV RGRRLPER--
601 650
ENSP00000424757/1-1286 LPGVRPGFPY GAAGHHHFPD ADDIRKTLKR LKAVSKQANA NRQKGQLAVE
ENSBTAP00000018438/1-1281 PPGVHLGFPK GLQ-ITTNPL MLMLSENLKR FKDISKE-NI SVQKGQPAME
ENSTTRP00000009208/1-1277 PPGVHPGFPK GAAGHHHSPD ADALRKTWKR LKAVSKQANI NRQKGQLAVE
bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ----------
BACU015217/1-1236 ---------- ---------- ---------- ---------- --QKGQLAVE
651 700
ENSP00000424757/1-1286 RAKQVEEFLQ RKREAMQNKA RAEGHMGILQ NLAAMYGGRP SSSRGGKPRN
ENSBTAP00000018438/1-1281 RAKQVEEFLQ RRREAKQNKA RAEGHMGILH NLAALYGGRP SSSRGGKPRN
ENSTTRP00000009208/1-1277 RAKQVEEFLQ RRREARQNKA RAEGHMGTLH NLAALCEGRR SSSRGGKPRS
bmy_15279T0/1-644 ---------- ---------- -----YGVF- -----CR--- ----------
BACU015217/1-1236 RAKQVEEFLQ RRREARQNKA RAEGHMGTLH NLAALCEGRR SSSRGGKPRS
701 750
ENSP00000424757/1-1286 KEEEVYLARL RQIRLQNFNE RQQIKAKLRG EKKEANHSEG QEGSEEADMR
ENSBTAP00000018438/1-1281 KEEEVYLARL RQIRLQNFNE RQQIRAKLRG EKKETDSSED QEGSEEADVR
ENSTTRP00000009208/1-1277 KEEEVYLARL RQIRLQNFNE RQQIRAKLRG EKKEADSSKG QEGSEESDVR
bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ----------
BACU015217/1-1236 KEEEVYLARL RQIRLQNFNE RQQIRAKLRG EKKEADSSEG QEGSEEADVR
751 800
ENSP00000424757/1-1286 RKKIESLKAH ANARAAVLKE QLERKRKEAY EREKKVWEEH LVAKGVKSSD
ENSBTAP00000018438/1-1281 RKKVEALKAQ ASARAAVLKE QLERKRKEAY EREKKVWEEH LVAKGIKNSD
ENSTTRP00000009208/1-1277 RKKVEVLKAQ VSARAAVLKE QLERRRKEAY EREKKLWEEN LVAKGIKNSD
bmy_15279T0/1-644 ---------- -SCLCFALEK VME------- ---------- ----------
BACU015217/1-1236 RKKVEALKAQ VSARAAVLKE QLERRRKEAY EREKKLWEEH LAARGVENAD
801 850
ENSP00000424757/1-1286 VSPPLGQHET GGSPSKQQMR SVISVTSALK EVGVDSSLTD TRETSEEMQK
ENSBTAP00000018438/1-1281 VSPPSGQQEM GGSPTKQPMR PVISVTSALK EVCMDQSLTD AQETSEEMQK
ENSTTRP00000009208/1-1277 VSPPSGQQET SGSPSKQQMR PVISVTSALK EVGMDRSLTD AQETSEEMQK
bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ----------
BACU015217/1-1236 ASPPSGQQET GGSPSKQRTR PVISVTSALK DVGVDRSLTD AQETSEEMQK
851 900
ENSP00000424757/1-1286 TNNAISSKRE ILRRLNENLK AQEDEKGKQN LSDTFEINVH EDAKEHEKEK
ENSBTAP00000018438/1-1281 SNSAVSSKRE ILRRLNQNLK VQENEKGRQS RRETGTVTVH EDAKELEKEK
ENSTTRP00000009208/1-1277 TNSAISSKRE ILRRLNQNLK AQEDENGKQS HSEIGAIIVH EDAKEQEKEK
bmy_15279T0/1-644 ---------- ---------- ---------- ------VIVH IY--------
BACU015217/1-1236 TNSAISSKRE ILRRLNQNLK AQEDENGKQS HSETGAVIVH EDAKEQEKEK
901 950
ENSP00000424757/1-1286 SVSSDRKKWE AGGQLVIPLD ELTLDTSFST TERHTVGEVI KLGPNGSPRR
ENSBTAP00000018438/1-1281 SVVSDRKKWE TGGQLVLPVD ELALDASFSV TEKHIVGEVI KLDPSGSPRK
ENSTTRP00000009208/1-1277 SVSSDRKKWE AGGHLVIPVD ELALDTSFSV TEKRTVGEVI KLDPGGSPRK
bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ----------
BACU015217/1-1236 SVSSDRKKWE AGGHLVIPMD ELAPDVSFSV TEKHTVGEVI KLDPGGSPRK
951 1000
ENSP00000424757/1-1286 AWGKSPTDSV LKILGEAELQ LQTELLENTT IRSEISPEGE KYKPLITGEK
ENSBTAP00000018438/1-1281 VWGKSPTDSV LRILGEAELQ LQTELLENTS IRNEISPESE NFKSLITEEE
ENSTTRP00000009208/1-1277 VWGKSPIDSV LKVLGEAELQ LQTELLENTT IRSEISPQGE ECKPLITGEE
bmy_15279T0/1-644 -WQRNPT--- ---------- ---------- ---------- ----------
BACU015217/1-1236 VWGRSPTDSV LKILGEAELQ LQTELLENTT IRSEISPQGE ECKPLITGEE
1001 1050
ENSP00000424757/1-1286 KVQCISHEIN PSAIVDSPVE TKSPEFSEAS PQMSLKLEGN LEEPDDLETE
ENSBTAP00000018438/1-1281 KVKCIPLEMN PPATLDSSVE TNSPNISEAS PQTALKAEGD LEEPDDLEAE
ENSTTRP00000009208/1-1277 KIKCISPEMN PSATVDSSVE TDSPNFSEPS PQMALKPEGN LDEPDDLEAE
bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ----------
BACU015217/1-1236 KIKCISPEMN PSATVDSSAE TNSPNFSEPS PQTALKPEGN LDEPDDLEAE
1051 1100
ENSP00000424757/1-1286 ILQEPSGTNK DESLPCTITD VWISEEKETK ETQSADRITI QENEVSEDGV
ENSBTAP00000018438/1-1281 VLQEPSGADR DGGLPQPVLD MWVTEREGAE EVELEDRITI QQNELSEDKA
ENSTTRP00000009208/1-1277 FLQEPSRADG DGGLQCPVLD VWVSEIKEAK EAELEDRITI QQNEVSEDGA
bmy_15279T0/1-644 ---------- ---------- -WSTSR---- ---------- ----ISQGGC
BACU015217/1-1236 FLQEPSGADR DGGLPCPVLD VWVSEIKEAK EAELEDRITI QQNEVSEDGA
1101 1150
ENSP00000424757/1-1286 SSTVDQLSDI HIEPGTNDSQ HSKCDVDKSV QPEPFFHKVV HSEHLNLVPQ
ENSBTAP00000018438/1-1281 PSSVDHLSEV HVEPGVDDSP PSKRDIDKSM QPEPFFHKVV YSEHLKAVSQ
ENSTTRP00000009208/1-1277 PRSMDPLGEV HVEPGVDGSP HSECDVDESM QPEPFFHK-- ---HLKAASQ
bmy_15279T0/1-644 RSS------- ---------- ---------- ---PFL---- ----------
BACU015217/1-1236 PRGMDHRSEV HVEPGVDGSP HSEGDVDESV QPEPFFHK-- ---HLKAASQ
1151 1200
ENSP00000424757/1-1286 VQSVQCSPEE SFAFRSHSHL PPKNKNKNSL LIGLSTGLFD ANNPKMLRTC
ENSBTAP00000018438/1-1281 VQSVLCSPEE SFPLRSHSDS PPRNKKQNSL LIGLSTGLFD ANNPKMLRTC
ENSTTRP00000009208/1-1277 VQSVLCSPEE SSPLRSHSGS PRRNKKQNSL LIGLSTGLFD ANNPKMLRTC
bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ----------
BACU015217/1-1236 VQSVLCSLEE SSPLRPHCGS PPRNKKQSSL LIGLSTGLFD ANNPKMLRTC
1201 1250
ENSP00000424757/1-1286 SLPDLSKLFR TLMDVPTVGD VRQDNLEIDE IEDENIKEGP SDSEDIVFEE
ENSBTAP00000018438/1-1281 SLPDLSKLFR TLMDVPTVGD GRQDNL---E MEDEHVKEGP SDSEDIVFEE
ENSTTRP00000009208/1-1277 SLPDLSKLFR TLMDVPIVGD GRQDNLEMDE MEDEHVKEGP SDSEDIVFEE
bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ----------
BACU015217/1-1236 SLPDLSKLFR TLMDIPIVGD GRQDNLELDE MEDEHVKEGP SDSEDIAFEE
1251 1300
ENSP00000424757/1-1286 TDTDLQELQA SMEQLLREQP GEEYSEEEES VLKNS-DVEP TANGTDVADE
ENSBTAP00000018438/1-1281 ADTDLQELQA SMEQLLQEQP GEDYSEEEES GLKTSDDAEQ AANGTDAGEE
ENSTTRP00000009208/1-1277 TDTDLQELQA SMEQLLREQP GEDYSEEEGL GLKTS-DAEQ AANGTDAGDE
bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ----------
BACU015217/1-1236 ADTDLQALQA SMEQLLREQP GEDYSEEEGS GLRTS-DAEQ AATGTDAGDE
1301 1350
ENSP00000424757/1-1286 DDNPSSESAL NEEWHSDNSD GEIASECECD SVFNHLEELR LHLEQEMGFE
ENSBTAP00000018438/1-1281 DDNPSSESAL NEEWHSDNSD GEITSECEYD SVFNHLEELR LHLEQEIGFE
ENSTTRP00000009208/1-1277 DDSPSSESAL NEEWHSDNSD GEITSECEYD SVFNHLEELR LHLEQEIGFE
bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ----------
BACU015217/1-1236 DDSPSSGSAL NEEWHSDNSD GEITSECEYD SVFNHLEELR LHLEQEIGFE
1351 1400
ENSP00000424757/1-1286 KFFEVYEKIK AIHEDEDENI EICSKIVQNI LGNEHQHLYA KILHLVMADG
ENSBTAP00000018438/1-1281 KFFEVYEKIK AVHEDEDENI EICSTIVQNI LGNEHQHLYA KILHLVMADG
ENSTTRP00000009208/1-1277 KFFEVYEKVK AVHEDEDENI EICSTVVQNL LGNEHQHLYS KILHLVMADG
bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ----------
BACU015217/1-1236 KFFEAYEKIK AVHEDEDENI EVCSTVVQNL LGNEHQHLYS KILHLVMADG
1401 1450
ENSP00000424757/1-1286 AYQEDNDE
ENSBTAP00000018438/1-1281 AYQEDNDE
ENSTTRP00000009208/1-1277 AYQEG---
bmy_15279T0/1-644 --------
BACU015217/1-1236 AYQEDNDE