KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:35 2014 Check: 00 .. Name: ENSP00000424757/1-1286 Len: 1408 Check: 3567 Weight: 1.00 Name: ENSBTAP00000018438/1-1281 Len: 1408 Check: 2936 Weight: 1.00 Name: ENSTTRP00000009208/1-1277 Len: 1408 Check: 1689 Weight: 1.00 Name: bmy_15279T0/1-644 Len: 1408 Check: 9159 Weight: 1.00 Name: BACU015217/1-1236 Len: 1408 Check: 8074 Weight: 1.00 // 1 50 ENSP00000424757/1-1286 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018438/1-1281 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009208/1-1277 ---------- ---------- ---------- ---------- ---------- bmy_15279T0/1-644 MALAAVDFVQ FVGMHTEVGL KSEPVTGPPT AGPRLWLWRA LVVVAYLLRC BACU015217/1-1236 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000424757/1-1286 -----MEKYV RLQKIGEGSF GKAILVKSTE DGRQYVIKEI NISRMSSKER ENSBTAP00000018438/1-1281 -----MEKYI RVQKIGEGSF GKAILVRSTE DGRQYVIKEI NISRMSNKER ENSTTRP00000009208/1-1277 -----MEKYV RVQKIGEGSF GKAILVKSIE DGRQYVIKEI NISSMSSKER bmy_15279T0/1-644 LRKRTMEKYV RVQKIGEGSF GKAILVKSME DGRQYVIKEI NISSMSSKER BACU015217/1-1236 -----MEKYV RVQKIGEGSF GKAILVKSVE DGRQYVIKEI NISSMSSKER 101 150 ENSP00000424757/1-1286 EESRREVAVL ANMKHPNIVQ YRESFEENGS LYIVMDYCEG GDLFKRINAQ ENSBTAP00000018438/1-1281 EESRREVAVL ANMRHPNIVQ YRESFEENGS LYIVMDYCEG GDLFKRINAQ ENSTTRP00000009208/1-1277 EESRREVAVL ANMKHPNIVQ YRESFEENGS LYIVMDYCEG GDLFKRINAQ bmy_15279T0/1-644 EESRREVAVL ANMKHPNIVQ YRESFEENGS LYIVMDYCEG GDLFKRINAQ BACU015217/1-1236 EESRREVAVL ANMKHPNIVQ YRESFEENGS LYIVMDYCEG GDLFKRINAQ 151 200 ENSP00000424757/1-1286 KGVLFQEDQI LDWFVQICLA LKHVHDRKIL HRDIKSQNIF LTKDGTVQLG ENSBTAP00000018438/1-1281 KGVLFQEDQI LDWFVQICLA LKHVHDRKIL HRDIKSQNIF LTRDGTIQLG ENSTTRP00000009208/1-1277 KGILFQEDQI LDWFVQICLA LKHVHDRKIL HRDIKSQNIF LTKDGTIQLG bmy_15279T0/1-644 KGILFQEDQI LDWFVQICLA LKHVHDRKIL HRDIKSQNIF LTKDGTIQLG BACU015217/1-1236 KGILFQEDQI LDWFVQICLA LKHVHDRKIL HRDIKSQNIF LTKDGTIQLG 201 250 ENSP00000424757/1-1286 DFGIARVLNS TVELARTCIG TPYYLSPEIC ENKPYNNKSD IWALGCVLYE ENSBTAP00000018438/1-1281 DFGIARVLNS TVELARTCIG TPYYLSPEIC ENKPYNNKSD IWALGCVLYE ENSTTRP00000009208/1-1277 DFGIARVLNS TVELVRTCIG TPYYLSPEIC ENKPYNNKSD IWALGCVLYE bmy_15279T0/1-644 DFGIARVLNS TVELVRTCIG TPYYLSPEIC ENKPYNNKSD IWALGCVLYE BACU015217/1-1236 DFGIARVLNS TVELVRTCIG TPYYLSPEIC ENKPYNNKSD IWALGCVLYE 251 300 ENSP00000424757/1-1286 LCTLKHA--- ---------- ---------F EAGSMKNLVL KIISGSFPPV ENSBTAP00000018438/1-1281 MCTLKHA--- ---------- ---------F EAGNMKNLVL KIISGSFPPV ENSTTRP00000009208/1-1277 XCTLKHA--- ---------- ---------X XXXXXXXXXX XXXXXXXXXX bmy_15279T0/1-644 MCTLKHAEKS IDCQSDMAWW ILDLYFKELF EAGNMKNLVL KIISGSFPPV BACU015217/1-1236 MCTLKHA--- ---------- ---------F EAGNMKNLVL KIISGSFPPV 301 350 ENSP00000424757/1-1286 SLHYSYDLRS LVSQLFKRNP RDRPSVNSIL EKGFIAKRIE KFLSPQ---- ENSBTAP00000018438/1-1281 SLHYSYDLRS LLSQLFKRNP RDRPSVNSIL EKGFIAKRIE KFLSPQ---- ENSTTRP00000009208/1-1277 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX---- bmy_15279T0/1-644 SLHYSYDLRS LLSQLFKRNP RDRPSVNSIL EKGFIAKRIE KFLSPQDLSK BACU015217/1-1236 SLHYSYDLRS LLSQLFKRNP RDRPSVNSIL EKGFIAKRIE KFLSPQ---- 351 400 ENSP00000424757/1-1286 -------LIA EEFCLKTFSK FGSQPIPAKR PASGQNSISV MPAQKITKPA ENSBTAP00000018438/1-1281 -------LIA EEFCLKTFSK FGAQPLPAKR PASGQSLASI MSAQKITKPA ENSTTRP00000009208/1-1277 -------XXX XXXXXXXXXX XXXXXXXXKR PGSGQSLASV VSAQKITKPA bmy_15279T0/1-644 IYIKSISLIA EEFCLKTFSR FGAQPIPAKR PGSGQSLASV VSAQKITKPA BACU015217/1-1236 -------LIA EEFCLKTFSR FGAQPIPAKR PGSGQSLASV VSAQKITKPA 401 450 ENSP00000424757/1-1286 AKYGIPLAYK KYGDKKLHEK KPLQKHK--- ---------- ---------- ENSBTAP00000018438/1-1281 AKYGIPLTNK KYIDKKLHER KPLQKYK--- ---------- ---------- ENSTTRP00000009208/1-1277 AKYGVPLTYK KYGDKKLHEK KPLQKHK--- ---------- ---------- bmy_15279T0/1-644 AKYGVPLMYK KYGDKKLHEK KPLQKHKQTY FVPRKSEASF RFKFHLLSFE BACU015217/1-1236 AKYGVPLTYK KYGDKKLHEK KPLQKHK--- ---------- ---------- 451 500 ENSP00000424757/1-1286 ---------- QAHQTPEKRV NTGEERRKIS EEAARKRRLE FIEKEKKQKD ENSBTAP00000018438/1-1281 ---------- QAHQTPVKKV NPGEERRKLF EEAPRKRRLE LTEKEKKSKD ENSTTRP00000009208/1-1277 ---------- QAHQSPVKKV NPGEERRKLF EEPVRKRRLE LNEKEKKQKD bmy_15279T0/1-644 LKPNIVSLFV QAHQSPVKKV NPGEERRKLF EEPARKRRLE LNEKEKKRKD BACU015217/1-1236 ---------- QAHQSPVKKV NPGEERRKLF EEPARKRRLE LNEKERKQKD 501 550 ENSP00000424757/1-1286 QIISLMKAEQ MKRQEKERLE RINRAREQGW RNVLSAGGSG EVKAPFLGSG ENSBTAP00000018438/1-1281 Q-VSLLKAEQ VKRQEKQRLE RINRAREQGW RNVLSAGGSG EMKAPLLGSG ENSTTRP00000009208/1-1277 Q-ISLMKAEQ MKRQEKERLE KINRAREQGW RNVLSAGGSG EMKAPLFGSG bmy_15279T0/1-644 Q-ISLMKAEQ MKRQEKERLE KINRAREQGW RNVLSAGGSG EMKAPLFGSG BACU015217/1-1236 Q-ISLMKAEQ MKRQEKERLE KINRAREQGW RNVLSAGGSG EMKAPLFGSG 551 600 ENSP00000424757/1-1286 GTIAPSSFSS RGQYEHYHAI FDQMQQQRAE DNEAKWKREI YGRGLPERGI ENSBTAP00000018438/1-1281 GAMAPSSFSS RGQYEHYHAI FDQMQQQRAE DNEAKWKGEI HGQRLPERGI ENSTTRP00000009208/1-1277 GAVAPSSFSS RGQYEHYHAI FDQMQQQRAE DNEAKWKGER HGRRLPERGI bmy_15279T0/1-644 GAVAPSSFSS RGQYEHYHAI FDQMQQQRAG DNEAKWKGEI HGRRLPER-- BACU015217/1-1236 GAVAPSPFSS RGQYEHYHAI FDQMQQQRAG DNEAKWKGEV RGRRLPER-- 601 650 ENSP00000424757/1-1286 LPGVRPGFPY GAAGHHHFPD ADDIRKTLKR LKAVSKQANA NRQKGQLAVE ENSBTAP00000018438/1-1281 PPGVHLGFPK GLQ-ITTNPL MLMLSENLKR FKDISKE-NI SVQKGQPAME ENSTTRP00000009208/1-1277 PPGVHPGFPK GAAGHHHSPD ADALRKTWKR LKAVSKQANI NRQKGQLAVE bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ---------- BACU015217/1-1236 ---------- ---------- ---------- ---------- --QKGQLAVE 651 700 ENSP00000424757/1-1286 RAKQVEEFLQ RKREAMQNKA RAEGHMGILQ NLAAMYGGRP SSSRGGKPRN ENSBTAP00000018438/1-1281 RAKQVEEFLQ RRREAKQNKA RAEGHMGILH NLAALYGGRP SSSRGGKPRN ENSTTRP00000009208/1-1277 RAKQVEEFLQ RRREARQNKA RAEGHMGTLH NLAALCEGRR SSSRGGKPRS bmy_15279T0/1-644 ---------- ---------- -----YGVF- -----CR--- ---------- BACU015217/1-1236 RAKQVEEFLQ RRREARQNKA RAEGHMGTLH NLAALCEGRR SSSRGGKPRS 701 750 ENSP00000424757/1-1286 KEEEVYLARL RQIRLQNFNE RQQIKAKLRG EKKEANHSEG QEGSEEADMR ENSBTAP00000018438/1-1281 KEEEVYLARL RQIRLQNFNE RQQIRAKLRG EKKETDSSED QEGSEEADVR ENSTTRP00000009208/1-1277 KEEEVYLARL RQIRLQNFNE RQQIRAKLRG EKKEADSSKG QEGSEESDVR bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ---------- BACU015217/1-1236 KEEEVYLARL RQIRLQNFNE RQQIRAKLRG EKKEADSSEG QEGSEEADVR 751 800 ENSP00000424757/1-1286 RKKIESLKAH ANARAAVLKE QLERKRKEAY EREKKVWEEH LVAKGVKSSD ENSBTAP00000018438/1-1281 RKKVEALKAQ ASARAAVLKE QLERKRKEAY EREKKVWEEH LVAKGIKNSD ENSTTRP00000009208/1-1277 RKKVEVLKAQ VSARAAVLKE QLERRRKEAY EREKKLWEEN LVAKGIKNSD bmy_15279T0/1-644 ---------- -SCLCFALEK VME------- ---------- ---------- BACU015217/1-1236 RKKVEALKAQ VSARAAVLKE QLERRRKEAY EREKKLWEEH LAARGVENAD 801 850 ENSP00000424757/1-1286 VSPPLGQHET GGSPSKQQMR SVISVTSALK EVGVDSSLTD TRETSEEMQK ENSBTAP00000018438/1-1281 VSPPSGQQEM GGSPTKQPMR PVISVTSALK EVCMDQSLTD AQETSEEMQK ENSTTRP00000009208/1-1277 VSPPSGQQET SGSPSKQQMR PVISVTSALK EVGMDRSLTD AQETSEEMQK bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ---------- BACU015217/1-1236 ASPPSGQQET GGSPSKQRTR PVISVTSALK DVGVDRSLTD AQETSEEMQK 851 900 ENSP00000424757/1-1286 TNNAISSKRE ILRRLNENLK AQEDEKGKQN LSDTFEINVH EDAKEHEKEK ENSBTAP00000018438/1-1281 SNSAVSSKRE ILRRLNQNLK VQENEKGRQS RRETGTVTVH EDAKELEKEK ENSTTRP00000009208/1-1277 TNSAISSKRE ILRRLNQNLK AQEDENGKQS HSEIGAIIVH EDAKEQEKEK bmy_15279T0/1-644 ---------- ---------- ---------- ------VIVH IY-------- BACU015217/1-1236 TNSAISSKRE ILRRLNQNLK AQEDENGKQS HSETGAVIVH EDAKEQEKEK 901 950 ENSP00000424757/1-1286 SVSSDRKKWE AGGQLVIPLD ELTLDTSFST TERHTVGEVI KLGPNGSPRR ENSBTAP00000018438/1-1281 SVVSDRKKWE TGGQLVLPVD ELALDASFSV TEKHIVGEVI KLDPSGSPRK ENSTTRP00000009208/1-1277 SVSSDRKKWE AGGHLVIPVD ELALDTSFSV TEKRTVGEVI KLDPGGSPRK bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ---------- BACU015217/1-1236 SVSSDRKKWE AGGHLVIPMD ELAPDVSFSV TEKHTVGEVI KLDPGGSPRK 951 1000 ENSP00000424757/1-1286 AWGKSPTDSV LKILGEAELQ LQTELLENTT IRSEISPEGE KYKPLITGEK ENSBTAP00000018438/1-1281 VWGKSPTDSV LRILGEAELQ LQTELLENTS IRNEISPESE NFKSLITEEE ENSTTRP00000009208/1-1277 VWGKSPIDSV LKVLGEAELQ LQTELLENTT IRSEISPQGE ECKPLITGEE bmy_15279T0/1-644 -WQRNPT--- ---------- ---------- ---------- ---------- BACU015217/1-1236 VWGRSPTDSV LKILGEAELQ LQTELLENTT IRSEISPQGE ECKPLITGEE 1001 1050 ENSP00000424757/1-1286 KVQCISHEIN PSAIVDSPVE TKSPEFSEAS PQMSLKLEGN LEEPDDLETE ENSBTAP00000018438/1-1281 KVKCIPLEMN PPATLDSSVE TNSPNISEAS PQTALKAEGD LEEPDDLEAE ENSTTRP00000009208/1-1277 KIKCISPEMN PSATVDSSVE TDSPNFSEPS PQMALKPEGN LDEPDDLEAE bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ---------- BACU015217/1-1236 KIKCISPEMN PSATVDSSAE TNSPNFSEPS PQTALKPEGN LDEPDDLEAE 1051 1100 ENSP00000424757/1-1286 ILQEPSGTNK DESLPCTITD VWISEEKETK ETQSADRITI QENEVSEDGV ENSBTAP00000018438/1-1281 VLQEPSGADR DGGLPQPVLD MWVTEREGAE EVELEDRITI QQNELSEDKA ENSTTRP00000009208/1-1277 FLQEPSRADG DGGLQCPVLD VWVSEIKEAK EAELEDRITI QQNEVSEDGA bmy_15279T0/1-644 ---------- ---------- -WSTSR---- ---------- ----ISQGGC BACU015217/1-1236 FLQEPSGADR DGGLPCPVLD VWVSEIKEAK EAELEDRITI QQNEVSEDGA 1101 1150 ENSP00000424757/1-1286 SSTVDQLSDI HIEPGTNDSQ HSKCDVDKSV QPEPFFHKVV HSEHLNLVPQ ENSBTAP00000018438/1-1281 PSSVDHLSEV HVEPGVDDSP PSKRDIDKSM QPEPFFHKVV YSEHLKAVSQ ENSTTRP00000009208/1-1277 PRSMDPLGEV HVEPGVDGSP HSECDVDESM QPEPFFHK-- ---HLKAASQ bmy_15279T0/1-644 RSS------- ---------- ---------- ---PFL---- ---------- BACU015217/1-1236 PRGMDHRSEV HVEPGVDGSP HSEGDVDESV QPEPFFHK-- ---HLKAASQ 1151 1200 ENSP00000424757/1-1286 VQSVQCSPEE SFAFRSHSHL PPKNKNKNSL LIGLSTGLFD ANNPKMLRTC ENSBTAP00000018438/1-1281 VQSVLCSPEE SFPLRSHSDS PPRNKKQNSL LIGLSTGLFD ANNPKMLRTC ENSTTRP00000009208/1-1277 VQSVLCSPEE SSPLRSHSGS PRRNKKQNSL LIGLSTGLFD ANNPKMLRTC bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ---------- BACU015217/1-1236 VQSVLCSLEE SSPLRPHCGS PPRNKKQSSL LIGLSTGLFD ANNPKMLRTC 1201 1250 ENSP00000424757/1-1286 SLPDLSKLFR TLMDVPTVGD VRQDNLEIDE IEDENIKEGP SDSEDIVFEE ENSBTAP00000018438/1-1281 SLPDLSKLFR TLMDVPTVGD GRQDNL---E MEDEHVKEGP SDSEDIVFEE ENSTTRP00000009208/1-1277 SLPDLSKLFR TLMDVPIVGD GRQDNLEMDE MEDEHVKEGP SDSEDIVFEE bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ---------- BACU015217/1-1236 SLPDLSKLFR TLMDIPIVGD GRQDNLELDE MEDEHVKEGP SDSEDIAFEE 1251 1300 ENSP00000424757/1-1286 TDTDLQELQA SMEQLLREQP GEEYSEEEES VLKNS-DVEP TANGTDVADE ENSBTAP00000018438/1-1281 ADTDLQELQA SMEQLLQEQP GEDYSEEEES GLKTSDDAEQ AANGTDAGEE ENSTTRP00000009208/1-1277 TDTDLQELQA SMEQLLREQP GEDYSEEEGL GLKTS-DAEQ AANGTDAGDE bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ---------- BACU015217/1-1236 ADTDLQALQA SMEQLLREQP GEDYSEEEGS GLRTS-DAEQ AATGTDAGDE 1301 1350 ENSP00000424757/1-1286 DDNPSSESAL NEEWHSDNSD GEIASECECD SVFNHLEELR LHLEQEMGFE ENSBTAP00000018438/1-1281 DDNPSSESAL NEEWHSDNSD GEITSECEYD SVFNHLEELR LHLEQEIGFE ENSTTRP00000009208/1-1277 DDSPSSESAL NEEWHSDNSD GEITSECEYD SVFNHLEELR LHLEQEIGFE bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ---------- BACU015217/1-1236 DDSPSSGSAL NEEWHSDNSD GEITSECEYD SVFNHLEELR LHLEQEIGFE 1351 1400 ENSP00000424757/1-1286 KFFEVYEKIK AIHEDEDENI EICSKIVQNI LGNEHQHLYA KILHLVMADG ENSBTAP00000018438/1-1281 KFFEVYEKIK AVHEDEDENI EICSTIVQNI LGNEHQHLYA KILHLVMADG ENSTTRP00000009208/1-1277 KFFEVYEKVK AVHEDEDENI EICSTVVQNL LGNEHQHLYS KILHLVMADG bmy_15279T0/1-644 ---------- ---------- ---------- ---------- ---------- BACU015217/1-1236 KFFEAYEKIK AVHEDEDENI EVCSTVVQNL LGNEHQHLYS KILHLVMADG 1401 1450 ENSP00000424757/1-1286 AYQEDNDE ENSBTAP00000018438/1-1281 AYQEDNDE ENSTTRP00000009208/1-1277 AYQEG--- bmy_15279T0/1-644 -------- BACU015217/1-1236 AYQEDNDE