KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:04:36 2014 Check: 00 ..
Name: ENSP00000384273/1-551 Len: 606 Check: 3799 Weight: 1.00
Name: ENSBTAP00000018453/1-551 Len: 606 Check: 5875 Weight: 1.00
Name: ENSTTRP00000002164/1-574 Len: 606 Check: 6980 Weight: 1.00
Name: BACU003481/1-585 Len: 606 Check: 6699 Weight: 1.00
Name: bmy_10228T0/1-560 Len: 606 Check: 79 Weight: 1.00
//
1 50
ENSP00000384273/1-551 ---------- ---------- ---------- -----MDELF PLIFPAEPAQ
ENSBTAP00000018453/1-551 ---------- ---------- ---------- -----MDDLF PLIFPAEPAQ
ENSTTRP00000002164/1-574 ---------- SGEWLCCSAR RGPSCDPGPA PGTPAMDXXX XXXXPAEPAQ
BACU003481/1-585 MLVGTLLTKV EFSYLWVFAL VSVVCQ---- --REYCYNLF PLIFPTEPAQ
bmy_10228T0/1-560 ---------- ---------- ---------- -----MDDLF PLIFPAEPAQ
51 100
ENSP00000384273/1-551 ASGPYVEIIE QPKQRGMRFR YKCEGRSAGS IPGERSTDTT KTHPTIKING
ENSBTAP00000018453/1-551 ASGPYVEIIE QPKQRGMRFR YKCEGRSAGS IPGERSTDTT KTHPTIKING
ENSTTRP00000002164/1-574 ASGPYVEIIE QPKQRGMRFR YKCEGRSAGS IPGERSTDTT KTHPTIKING
BACU003481/1-585 ASGPYVEIIE QPKQRGMRFR YKCEGRSAGS IPGERSTDTT KTHPTIKING
bmy_10228T0/1-560 ASGPYVEIIE QPKQRGMRFR YKCEGRSAGS IPGERSTDTT KTHPTIKING
101 150
ENSP00000384273/1-551 YTGPGTVRIS LVTKDPPHRP HPHELVGKDC RDGFYEAELC PDRCIH----
ENSBTAP00000018453/1-551 YTGPGTVRIS LVTKDPPHRP HPHELVGKDC RDGFYEAELC PDRCIH----
ENSTTRP00000002164/1-574 YTGPGTVRIS LVTKDPPHRP HPHELVGKDC RDGFYEAELC PDRCIH----
BACU003481/1-585 YTGPGTVRIS LVTKDPPHRP HPHELVGKDC RDGFYEAELC PDRCIH----
bmy_10228T0/1-560 YTGPGTVRIS LVTKDPPHRP HPHELVGKDC RDGFYEAELC PDRCIHSGTD
151 200
ENSP00000384273/1-551 -----SFQNL GIQCVKKRDL EQAISQRIQT NNNPFQVPIE EQRGDYDLNA
ENSBTAP00000018453/1-551 -----SFQNL GIQCVKKRDL EQAISQRIQT NNNPFQVPIE EQRGDYDLNA
ENSTTRP00000002164/1-574 -----SFQNL GIQCVKKRDL EQAISQRIQT NNNPFQVPVE EQRGDYDLNA
BACU003481/1-585 -----SFQNL GIQCVKKRDL EQAISQRIQT NNNPFQVPIE EQRGDYDLNA
bmy_10228T0/1-560 ARGGLSFQNL GIQCVKKRDL EQAISQRIQT NNNPFQVPIE EQRGDYDLNA
201 250
ENSP00000384273/1-551 VRLCFQVTVR DPSGRPLRLP PVLSHPIFDN RAPNTAELKI CRVNRNSGSC
ENSBTAP00000018453/1-551 VRLCFQVTVR DPAGRPLRLA PVLSHPIFDN RAPNTAELKI CRVNRNSGSC
ENSTTRP00000002164/1-574 VRLCFQVTVR DPAGRPLRLS PALSHPIFDN RA--NTELKI CRVNRNSGSC
BACU003481/1-585 VRLCFQVTVR DPAGRPLRLS PVLSHPIFDN RAPNTAELKI CRVNRNSGSC
bmy_10228T0/1-560 VRLCFQVTVR DPAGRPLRLS PVLSHPIFDN RAPNTAELKI CRVNRNSGSC
251 300
ENSP00000384273/1-551 LGGDEIFLLC DKVQKEDIEV YFTGPGWEAR GSFSQADVHR QVAIVFRTPP
ENSBTAP00000018453/1-551 LGGDEIFLLC DKVQKEDIEV YFTGPGWEAR GSFSQADVHR QVAIVFRTPP
ENSTTRP00000002164/1-574 LGGDEIFLLC DKVQKEDIEV YFTGPGWEAR GSFSQADVHR QVAIVFRTPP
BACU003481/1-585 LGGDEIFLLC DKVQKEDIEV YFTGPGWEAR GSFSQAYLHR QVAIVFRTPP
bmy_10228T0/1-560 LGGDEIFLLC DKVQKEDIEV YFTGPGWEAR GSFSQADVHR QVAIVFRTPP
301 350
ENSP00000384273/1-551 YADPSLQAPV RVSMQLRRPS DRELSEPMEF QYLPDTDDRH RIEEKRKRTY
ENSBTAP00000018453/1-551 YADPGLQAPV RVSMQLRRPS DRELSEPMEF QYLPDTDDRH RIEEKRKRTY
ENSTTRP00000002164/1-574 YADPSLQAPV RVSMQLRRPS DRELSEPMEF QYLPDTDDRH RIEEKRKRTY
BACU003481/1-585 YADPGLQAPV RVSMQLRRPS DRELSEPMEF QYLPDTDDRH RIEEKRKRTY
bmy_10228T0/1-560 YADPSLQAPV RVSMQLRRPS DRELSEPMEF QYLPDTDDRH RIEEKRKRTY
351 400
ENSP00000384273/1-551 ETFKSIMKKS PFSGPTDPRP PPRRIAVPSR SSASVPKPAP QPYPFTSSLS
ENSBTAP00000018453/1-551 ETFKSIMKKS PFNGPTDPRP PTRRIAVPNR GSASIPKPAP QPYSFTPSLS
ENSTTRP00000002164/1-574 ETFKSIMKKS PFNGPTDHRP PTRRIAVPSR SSTSVPKPPP QPYPFTPSLS
BACU003481/1-585 ETFKSIMKKS PFNGPTDHRP PTRRIAVPSR SSASVPKPAP QPYPFTPSLS
bmy_10228T0/1-560 ETFKSIMKKS PFNGPTDHRP PTRRIAVPSR SSASVPKPAP QPYPFTPSLS
401 450
ENSP00000384273/1-551 TINYDEFPTM VFPSGQI-SQ ASALAPAPPQ VLPQ----AP APAPAPAMVS
ENSBTAP00000018453/1-551 TINFEEFSPM VFPSGQIPSQ TSALAPAPTP VLTQTQVLAP APAPAPGMAS
ENSTTRP00000002164/1-574 TINFEEFSPM VFPSGQIPSQ TSALAPAPAL VLAQ------ APAPAPAMAS
BACU003481/1-585 TINFEEFSPM VFPSGQIPSQ TSALAPAPAP VLAQ------ APAPAPAMAS
bmy_10228T0/1-560 TINFEEFSPM VFPSGQIPSH TSALAPAPAP VLAQ------ APAPAPAMAS
451 500
ENSP00000384273/1-551 ALAQAPAPVP VLAPGPPQAV APPAPKPTQA GEGTLSEALL QLQFD-DEDL
ENSBTAP00000018453/1-551 TLAQA----- -LAPGLAQAV TPPAPRTNQT GEGTLTEALL QLQFDTDEDL
ENSTTRP00000002164/1-574 ALAQAPAPGP VLAPGLAQAV TPPAPKTNPA GEGTLTEALL QLQFDADEDL
BACU003481/1-585 ALAQAPAPGP VLAPGLAQAV TQPAPKTNPA GEGTLTEALL QLQFDADEDL
bmy_10228T0/1-560 ALAQAPAPGP VLAPGLAQAV TPPAPKTNPA GEGTLTEALL QLQFDADEDL
501 550
ENSP00000384273/1-551 GALLGNSTDP AVFTDLASVD NSEFQQLLNQ GIPVAPHT-- ---TEPMLME
ENSBTAP00000018453/1-551 GALLGNNTDP AVFTDLASVD NSEFQQLLNQ GVPMGPHT-- ---AEPMLME
ENSTTRP00000002164/1-574 GALLGNSTDP AVFTDLASVD NSEFQQLLNQ GVPMAPHT-- ---AEPMLME
BACU003481/1-585 GALLGNNTDP AVFTDLASVD NSEFQQLLSQ GVPMATXXXA EPGSEPMLME
bmy_10228T0/1-560 GALLGNNTDP AVFTDLASVD NSEFQQLLNQ GVPMAPHT-- ---AEPMLME
551 600
ENSP00000384273/1-551 YPEAITRLVT GAQRPPDPAP APLGAPGLPN GLLSGDEDFS SIADMDFSAL
ENSBTAP00000018453/1-551 YPEAITRLVT GSQRPPDPAP TPLGPPGLTN GLLSGDEDFS SIADVDFSAL
ENSTTRP00000002164/1-574 YPEAITRLVT GSQRPPDPAP TPLGASGLTN GLLSGDEDFS SIADMDFSAL
BACU003481/1-585 YPEAITRLVT GSQRPPDPAP TPLGASGLTN GLLSGDEDFS SIADMDFSAL
bmy_10228T0/1-560 YPEAITRLVT GSQRPPDPAP TPLGASGLTN GLLSGDEDFS SIADMDFSAL
601 650
ENSP00000384273/1-551 LSQISS
ENSBTAP00000018453/1-551 LSQISS
ENSTTRP00000002164/1-574 LSQISS
BACU003481/1-585 LSQISS
bmy_10228T0/1-560 LSQISS