KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:37 2014 Check: 00 .. Name: bmy_09470T0/1-446 Len: 801 Check: 3014 Weight: 1.00 Name: ENSP00000326128/1-738 Len: 801 Check: 4480 Weight: 1.00 Name: ENSTTRP00000010579/1-731 Len: 801 Check: 8450 Weight: 1.00 Name: ENSBTAP00000018457/1-730 Len: 801 Check: 9107 Weight: 1.00 Name: BACU001793/1-679 Len: 801 Check: 7267 Weight: 1.00 // 1 50 bmy_09470T0/1-446 ---------- ---------- ---MGKVVVK EQELSNPEG- ---------- ENSP00000326128/1-738 ---------- --------MT SDQDAKVVAE PQTQRVQEGK DSAHLMNGPI ENSTTRP00000010579/1-731 ---------- --------MT SDQDAKVVAE PQGQRVQEGK DSAHLMNGPI ENSBTAP00000018457/1-730 ---------- --------MT SDQDTKVVAE PQGQRVQEGK DSTHLMNGPI BACU001793/1-679 HPTASIKLLP VEPQSKQLMT SDQDAKVVAE PQGQRVQEGK DSAHL----- 51 100 bmy_09470T0/1-446 ---------- ---------- ----NAISKY WIYKWVH--- ---------- ENSP00000326128/1-738 SQTTSQTSSI PPLSQVPATK VSELNPNAEV WGAPVLHLEA SSAADG-VSA ENSTTRP00000010579/1-731 SQTTSQTSSI PALSQVPTAK VSELNPNAKV WGTPVLHLEA SSAADGSVSA ENSBTAP00000018457/1-730 SQTTSQSSSI PALSQVPTAK VSELNPNAKV WGTPLLQLEA RGAADGGVST BACU001793/1-679 ---------- -----VPTAK VSELNPNAKV WGTPVLHLEA SSAADGSVSA 101 150 bmy_09470T0/1-446 ---------- ---------- ---------- -VSNLQTCSI SSDFTQTVPS ENSP00000326128/1-738 AWEEVAGHHA DRGPQGSDAN GDGDQGHENA ALPDPQESDP ADMNALALGP ENSTTRP00000010579/1-731 AWEATPG--- -RGQEGLDTN GDGDKSHENA ALSDLQESDQ TAMSTLGLDH ENSBTAP00000018457/1-730 VWEAPPG--- -RGHLGLDTN GDGDKSHDNV GLSDLQESDQ TAMSTLGLDH BACU001793/1-679 AWEATPD--- -RGQEGLDTN GDGDKSHENA ALSDLPESDQ TAMSTLGLDH 151 200 bmy_09470T0/1-446 KEQASPKAN- ---------- ---------- ----FSLAIS ALARSFH--- ENSP00000326128/1-738 SEYDSLPENS ETGGNESQPD SQEDPREVLK KTLEFCLSRE NLASDMYLIS ENSTTRP00000010579/1-731 SEYESPPENS ETGGNESQPE SQEDPREVLK KTLEFCLSRE NLASDMYLIS ENSBTAP00000018457/1-730 SEYESPPESG ETGGNDSQPE SQEDPREVLK KTLEFCLSRE NLASDMYLIS BACU001793/1-679 SEYESPPENS ETGGNESQPE SQEDPREVLK KTLEFCLSRE NLASDMYLIS 201 250 bmy_09470T0/1-446 ---------- ---------- ---------- ---------- ---------- ENSP00000326128/1-738 QMDSDQYVPI TTVANLDHIK KLSTDVDLIV EVLRSLPLVQ VDEKGEKVRP ENSTTRP00000010579/1-731 QMDSDQYVPI TTVANLDHIK KLSTDIDLIV EVLRSLPLVQ VDEKGEKVRP ENSBTAP00000018457/1-730 QMDSDQYVPI TTVANLDHIK KLSTDMDLIV EVLRSLPLVQ VDEKGEKVRP BACU001793/1-679 QMDSDQYVPI TTVANLDHIK KLSTDMDLIV EVLRSLPLVQ VDEKGEKVRP 251 300 bmy_09470T0/1-446 ---------- ---------- ---------- ---------- ---------- ENSP00000326128/1-738 NQNRCIVILR EISESTPVEE VEALFKGDNL PKFINCEFAY NDNWFITFET ENSTTRP00000010579/1-731 NQNRCIVILR EIPESTPVEE VEALFKGDNL PRFINCEFAY NDNWFITFET ENSBTAP00000018457/1-730 NQNRCIVILR EIPESTPVEE VEALFKGDNL PRFINCEFAY NDNWFITFET BACU001793/1-679 NQNRCIVILR EIPESTPIEE VEALFKGDNL PRFINCEFAY NDNWFITFET 301 350 bmy_09470T0/1-446 ---------- ---------- ---------- ---------- NAMIILELSV ENSP00000326128/1-738 EADAQQAYKY LREEVKTFQG KPIKARIKAK AIAINTFLPK NGFRPLDVSL ENSTTRP00000010579/1-731 EADAQQAYKY LREEVKTFQG KPIKARIKAK AIAINTFLPK NGFRPLDMSL ENSBTAP00000018457/1-730 EADAQQAYKY LREEVKTFQG KPIKARIKAK AIAINTFLPK NGFRPLDMSL BACU001793/1-679 EADAQQAYKY LREEVKTFQG KPIKARIKAK AIAINTFLPK NGFRPLDMSL 351 400 bmy_09470T0/1-446 YKHFIYR--- ---------- ---------- ---------- ---------- ENSP00000326128/1-738 YAQQRYATSF YFPPMYSPQQ QFPLYSLITP QTWSATHSYL DPPLVTPFPN ENSTTRP00000010579/1-731 YTQQRYTASF YLPPVYSPQQ QFPLYSLIAP QTWSATHSYL DPPLVTPFPN ENSBTAP00000018457/1-730 YTQQRYTASF YLPPVYSPQQ QFPLYSLIAP QTWSATHSYL DPPLVTPFPN BACU001793/1-679 YTQQRYTASF YLPPVYSPQQ QFPLYSLIAP QTW------- ---------- 401 450 bmy_09470T0/1-446 ---------- ---------- ---------- ---NPSKSHL RHAIPSAERG ENSP00000326128/1-738 TGFINGFTSP AFKPAASPLT SLRQYPPRSR ---NPSKSHL RHAIPSAERG ENSTTRP00000010579/1-731 TGFINGFTSP TFKPAASPLT SLRQYPPRSQ VPGNPSKSHL RHAIPSAERG ENSBTAP00000018457/1-730 TGFINGFTSP TFKPAASPLA SLRQYPPRSR ---NPSKSHL RHAIPSAERG BACU001793/1-679 ---------- ---------- ---------- ---NPSKSHL RHAIPSAERG 451 500 bmy_09470T0/1-446 PGLLESPSIF NFTADRLMNG VRSPQTRQTG QPRARLQNPP VYAKRDAGPG ENSP00000326128/1-738 PGLLESPSIF NFTADRLING VRSPQTRQAG QTRTRIQNPS AYAKREAGPG ENSTTRP00000010579/1-731 PGLLESPSIF NFTADRLMNG VRSPQTRQTG QPRARLQNPP VYAKRDAGPG ENSBTAP00000018457/1-730 PGLLESPSIF NFTADRLMNG VRSPQVRQTA QPRARLQNPP AFAKRDVGPG BACU001793/1-679 PGLLESPSIF NFTADRLMNG VRSPQTRQTG QPRARLQNPP VYAKRDAGPG 501 550 bmy_09470T0/1-446 RVEQSSLESS PGLGRGRKNS FGYRKKREEK FTMSAFCVGD QVVYFEITGI ENSP00000326128/1-738 RVEPGSLESS PGLGRGRKNS FGYRKKREEK FT-------- ---------- ENSTTRP00000010579/1-731 RVEQSSLESS PGLGRGXXXX XXXXXXXXXX XX-------- ---------- ENSBTAP00000018457/1-730 RVEQSSFESS PGLGRGRKSS FGYRKKREEK FT-------- ---------- BACU001793/1-679 RVEQSSLESS PGLGRGRKNS FGYRKKREEK FT-------- ---------- 551 600 bmy_09470T0/1-446 TSLDKQNKLL SRRLHGVLLF QRSQTQSPTP PRPPSPSFEL GLSSFPPLPG ENSP00000326128/1-738 ---------- ---------- -SSQTQSPTP PKPPSPSFEL GLSSFPPLPG ENSTTRP00000010579/1-731 ---------- ---------- -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000018457/1-730 ---------- ---------- -RSQTQSPTP PRPPSPSFEL GLSSFPPLPG BACU001793/1-679 ---------- ---------- -RSQTQSPTP PRPPSPSFEL GLSSFPPLPG 601 650 bmy_09470T0/1-446 AAGHLKTEDL FENRLSGLLT GSSKERSLNA DASTNTLPAV PPREPSVP-- ENSP00000326128/1-738 AAGNLKTEDL FENRLSSLII GPSKERTLSA DASVNTLPVV VSREPSVPAS ENSTTRP00000010579/1-731 XXXXXXXXXX XXXXXXXXXX XXXXXXSLNA DASTNTLPAV PPREPSVP-- ENSBTAP00000018457/1-730 AAGHLKTEDL FENRLSGLLT GTSKERSLNA DASTNTLPAV HPREPLAP-- BACU001793/1-679 AAGHLKTEDL FENRLSGLLT GSSKERSLNA DASTNTLPAV PPREPSVP-- 651 700 bmy_09470T0/1-446 CAVSAACERA PSPAHPPEDP KVVEKQKETP SVDRPPP--T LSTTASKSVQ ENSP00000326128/1-738 CAVSATYERS PSPAHLPDDP KVAEKQRETH SVDRLPS--A LTATACKSVQ ENSTTRP00000010579/1-731 CAVSTACERA PSPAHPPEDP KVVEKQKETP SVDRPPP--T LSTTASKSVQ ENSBTAP00000018457/1-730 CAVSAACERT PSPARPPEDA KVVEKQRETP SVDRPPPALA LSTTASKSVQ BACU001793/1-679 CAVSAACERA PSPAHPPEDP KVVEKQKETP SVDRPPP--T LSTTASKSVQ 701 750 bmy_09470T0/1-446 VDGAVSELRK PSYAEICQRT NRELPSSPLQ PQKEQKPNTV GCGKEEKKLA ENSP00000326128/1-738 VNGAATELRK PSYAEICQRT SKEPPSSPLQ PQKEQKPNTV GCGKEEKKLA ENSTTRP00000010579/1-731 VDGAVSELRK PSYAEICQRT NREPPSSPLQ PQKEQKPNTV GCGKEEKKLA ENSBTAP00000018457/1-730 VNGAASELRK PSYAEICQRT SREPPSSPLQ PPKEQKPNPV GSGKEERKVT BACU001793/1-679 VDGAISELRK PSYAEICQRT NREPPSSPLQ PQKEQKPNAV GCGKDEKKLT 751 800 bmy_09470T0/1-446 E-----REPP APKSSPGPPK DQRRPPGRRP SPPASGRRLH REQSPPPRSP ENSP00000326128/1-738 EPAERYREPP ALKSTPGAPR DQRRPAGGRP SPSAMGKRLS REQSTPPKSP ENSTTRP00000010579/1-731 E-----REPS APKSSPGPPK DQRRPPGRRP SPPASGRRLH REQSPPPRSP ENSBTAP00000018457/1-730 E-----REPP APKSSPGPPK DQRRPLGRRP SPPGLGRRPH REQSPPPRPP BACU001793/1-679 E-----REPP APKSSPGPPK DQRRPPGRRP SPPASGRRLH REQSPPPRSP 801 850 bmy_09470T0/1-446 Q ENSP00000326128/1-738 Q ENSTTRP00000010579/1-731 Q ENSBTAP00000018457/1-730 Q BACU001793/1-679 Q