KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:39 2014 Check: 00 .. Name: ENSP00000418663/1-1114 Len: 1212 Check: 3374 Weight: 1.00 Name: ENSBTAP00000018474/1-1115 Len: 1212 Check: 7368 Weight: 1.00 Name: bmy_09363T0/1-914 Len: 1212 Check: 3202 Weight: 1.00 Name: BACU009331/1-1205 Len: 1212 Check: 4398 Weight: 1.00 Name: ENSTTRP00000005475/1-1116 Len: 1212 Check: 3435 Weight: 1.00 // 1 50 ENSP00000418663/1-1114 MLRGTMTAWR GMRPEVTLAC LLLATAGCFA DLNEVPQVTV QPASTVQKPG ENSBTAP00000018474/1-1115 MPRGMMAMQR GKQPEVTLAC LLLAAAGCFA DLNEVPQVTV QPSSTVQKLG bmy_09363T0/1-914 ---------- ------MLYC LPLSS----- -------IEA QPA------- BACU009331/1-1205 MPRGMMKTQR GKRPEVTLAC LLLAMAGCFA NLNEVPQVTV QPSSTVQKLG ENSTTRP00000005475/1-1116 MSRGMMITQR GKRSEVTLAC LLLAMASCFA NLNEVPQVTV QPSSTVQKLG 51 100 ENSP00000418663/1-1114 GTVILGCVVE PPRMNVTWRL NGKELNGSDD ALGVLITHGT LVITALNNHT ENSBTAP00000018474/1-1115 GTVILGCVVE PPWMNTTWRL NGRELNGSDD SLGILITRGT LVVTALNNHT bmy_09363T0/1-914 ---------- PPLLST---- ---------- ---------- ---------- BACU009331/1-1205 GTVILGCVVE PPWMNTTWRL NGKELNGSDD ARGVLITRGT LVITALSNHT ENSTTRP00000005475/1-1116 GTVILGCVVE PPWMNTTWRL NGKELNGSDD ALGVLITRGT LVITALSNHT 101 150 ENSP00000418663/1-1114 VGRYQCVARM PAGAVASVPA TVTLA----- ---------- ---------- ENSBTAP00000018474/1-1115 VGRYQCVARM PAGAVASVPA TVTLA----- ---------- ---------- bmy_09363T0/1-914 ---------- ---------- ---------- ---------- ---------- BACU009331/1-1205 VGRYQCVARM PAGAVASVPA TVTLATLHPG ANRSVCLNQQ QVLPVDTAFL ENSTTRP00000005475/1-1116 VGRYQCVARM PAGAVASVPA TVTLA----- ---------- ---------- 151 200 ENSP00000418663/1-1114 ---------- ---------- ---------- ---------- ---NLQDFKL ENSBTAP00000018474/1-1115 ---------- ---------- ---------- ---------- ---NLQDFKL bmy_09363T0/1-914 ---------- ---------- ---------- ---------- ---DLQDFKL BACU009331/1-1205 VPGPRGILSI VLHTAQHVIT TSSELACSVK AVSCPLPLVS YHSDLQDFKL ENSTTRP00000005475/1-1116 ---------- ---------- ---------- ---------- ---NLQDFKL 201 250 ENSP00000418663/1-1114 DVQHVIEVDE GNTAVIACHL PESHPKAQVR YSVKQEWLEA SRGNYLIMPS ENSBTAP00000018474/1-1115 DVQHVIEVDE GNTAVIACHL PESHPKAQVR YSVKQEWLEA SRDNYLIMPS bmy_09363T0/1-914 DVQHVIEVDE GNTAVIACHL PESHPKAQVR YSVKHEWLEA SRDNYLIMPS BACU009331/1-1205 DVQHVIEVDE GNTAVIACHL PESHPKAQVR YSVKHEWLEA SRDNYLIMPS ENSTTRP00000005475/1-1116 DVQHVIEVDE GNTAVIACHL PESHPKAQVR YSVKHEWLEA SRDNYLIMPS 251 300 ENSP00000418663/1-1114 GNLQIVNASQ EDEGMYKCAA YNPVTQEVKT SGSSDRLRVR RSTAEAARII ENSBTAP00000018474/1-1115 GNLQIVNASQ EDEGMYKCAA YNPVTQEVKT SGSSDRLRVR RSTAEAARII bmy_09363T0/1-914 GNLQIVNASQ EDEGMYKCAA YNPVTQEVKT SGSSDRLRVR RSTAEAARII BACU009331/1-1205 GNLQIVNASQ EDEGMYKCAA YNPVTQEVKT SGSSDRLRVR RSTAEAARII ENSTTRP00000005475/1-1116 GNLQIVNASQ EDEGMYKCAA YNPVTQEVKT SGTSDRLRVR RSTAEAARII 301 350 ENSP00000418663/1-1114 YPPEAQTIIV TKGQSLILEC VASGIPPPRV TWAKDGSSVT GYNKTRFL-- ENSBTAP00000018474/1-1115 YPPEAQTIVV TKGQSLILEC VASGIPPPRV TWAKDGSSVA SYNKTRFL-- bmy_09363T0/1-914 YPPEAQTIVV TKGQSLILEC VASGIPPPRV TWAKDGSSVA SYNKTRFL-- BACU009331/1-1205 YPPEAQTIIV TKGQSLILEC VASGIPPPRV TWAKDGSSVA SYNKTRFLLX ENSTTRP00000005475/1-1116 YPPEAQTIVV TKGQSLILEC VAGGIPPPRV TWAKDGSSVA SYNKTRFL-- 351 400 ENSP00000418663/1-1114 ---------- ---------- LSNLLIDTTS EEDSGTYRCM ADNGVGQPGA ENSBTAP00000018474/1-1115 ---------- ---------- LSNLLIDTTN EEDSGTYRCM ADNGVGEPGA bmy_09363T0/1-914 ---------- ---------- LSNLLIDTTS EEDSGTYRCM ADNGVGDPGA BACU009331/1-1205 XXXXXXXXXX XXXXXXXXXX LSNLLIDTTS EEDSGTYRCM ADNGVGDPGA ENSTTRP00000005475/1-1116 ---------- ---------- LSNLLIDTTS DEDSGTYRCM ADNGVGDPGA 401 450 ENSP00000418663/1-1114 AVILYNVQVF EPPEVTMELS QLVIPWGQSA KLTCEVRGNP PPSVLWLRNA ENSBTAP00000018474/1-1115 AVILYNVQVF EPPEVTMELS QLVIPWGQSA KLTCEVRGNP PPSVLWLRNA bmy_09363T0/1-914 AVILYNVQVF EPPEVTMELS QLVIPWGQSA KLTCEVRGNP PPSVLWLRNA BACU009331/1-1205 AVILYNVQVF EPPEVTMELS QLVIPWGQSA KLTCEVRGNP PPSVLWLRNA ENSTTRP00000005475/1-1116 AVILYNVQVF EPPEVTMELS QLVIPWGQSA KLTCEVRGNP PPSVLWLRNA 451 500 ENSP00000418663/1-1114 VPLISSQRLR LSRRALRVLS MGPEDEGVYQ CMAENEVGSA HAVVQLRTSR ENSBTAP00000018474/1-1115 VPLTSSQRLR LSHRALRVVS MGPEDEGVYQ CMAENEVGSA HAVVQLKTAR bmy_09363T0/1-914 VPLTSSQRLR LSRRALRVVS VGPEDEGVYQ CMAENEVGSA HAVVQLRTAR BACU009331/1-1205 VPLTSSQRLR LSRRALRVVS VGPEDEGVYQ CMAENEVGSA HAVVQLRTAR ENSTTRP00000005475/1-1116 VPLTSSQRLR LSRRALRVVS VGPEDEGVYQ CMAENEVGSA HAVVQLRTAR 501 550 ENSP00000418663/1-1114 PSITPRLWQD AELATGTPPV SPSKLGNPEQ MLRGQPALPR PPTSVGPASP ENSBTAP00000018474/1-1115 PGTTLRPWWD AQSATVTPPV PPSRPGGPDQ MPKGHPGLLR PQASEQPASP bmy_09363T0/1-914 PA----PGQD AGP------- ---------- ---------- ---------- BACU009331/1-1205 PGTTLRPWRD AKPATATPPV PPPGPGSPAQ MPKGQPGPLR PPASAQPAPL ENSTTRP00000005475/1-1116 PGTTLRPWRD AKPATATPPV PLPGPGSPAQ MPKGHPGALR PPASALPAPW 551 600 ENSP00000418663/1-1114 QCPGEKGQGA PAEAPIILSS PRTSKTDSYE LVWRPRHEGS GRAPILYYVV ENSBTAP00000018474/1-1115 QCPGDQGPVA PAEAPIILSS PRTSKTDSYE LVWRPRHEGS SRAPVLYYVV bmy_09363T0/1-914 ---------- ---------- ---------- ---------- -------YTS BACU009331/1-1205 PCLGEQGQAA PAEAPVILSS PRTSKTDSYE LVWRPRHEGS GWAPILYYVV ENSTTRP00000005475/1-1116 PCLGEQGQAA PAEAPVILSS PRTSKTDSYE LVWRPRHEGS GWAPILYYVV 601 650 ENSP00000418663/1-1114 KHRK-VTNSS DDWTISGIPA NQHRLTLTRL DPGSLYEVEM AAYNCAGEGQ ENSBTAP00000018474/1-1115 KHRK-VTNSS DDWTISGIPA SQHRLTLTRL DPGSLYEVEM AAYNCAGEGQ bmy_09363T0/1-914 HLLQQVTNSS DDWTISGIPA SQHRLTLTRL DPGSLYEVEM AAYNCAGEGQ BACU009331/1-1205 KHRK-VTNSS DDWTISGIPA SQHRLTLTRL DPGSLYEVEM AAYTCAGEGQ ENSTTRP00000005475/1-1116 KHRKQVTNSS DDWTISGIPA SQHRLTLTRL DPGSLYEVEM AAYNCAGEGQ 651 700 ENSP00000418663/1-1114 TAMVTFRTGR RPKPEIMASK EQQIQRDDPG ASPQSSSQPD HGRLSPPEAP ENSBTAP00000018474/1-1115 TAMVTFRTGR RPKPEIVASK EQQIQRDDPG AGPQSSSQPD HGRLSPPEAP bmy_09363T0/1-914 TAMVTFRTGR RPKPEIMANK EQQIQRDDPG ASPQSSSQPD XGRLSPPEAP BACU009331/1-1205 TAMVTFRTGR RPKPEIMASK EQQIQRDDPG ASPQSSSQPD HGRLSPPEAP ENSTTRP00000005475/1-1116 TAMVTFRTGR RPKPEIVASK EQQIQRDDPG ASPQSSSQPD HGRLSPPEAP 701 750 ENSP00000418663/1-1114 DRPTISTASE TSVYVTWIPR GNGGFPIQSF RVEYKKLKKV GDWILATSAI ENSBTAP00000018474/1-1115 DRPTISMASE TSVYVTWIPR GNGGFPIQSF RVEYKKLKKV GDWILATSAI bmy_09363T0/1-914 DRPTISMASE TSVYVTWIPR GNGGFPIQSF RVEYKKLKKV GDWILATSAI BACU009331/1-1205 DRPTISMASE TSVYVTWIPR GNGGFPIQSF RVEYKKLKKV GDWILATSAI ENSTTRP00000005475/1-1116 DRPTISMASE TSVYVTWIPR GNGGFPIQSF RVEYKKLKKV GDWILATSAI 751 800 ENSP00000418663/1-1114 PPSRLSVEIT GLEKGTSYKF RVRALNMLGE SEPSAPSRPY VVSGYSGRVY ENSBTAP00000018474/1-1115 PPSRLSVEIT GLEKGTSYKF RVRALNMLGE SEPSAPSRPY VVSGYSSRVY bmy_09363T0/1-914 PPSRLSVEIT GLEKG----- RALATALPGP --PAAPG-PL EEKGSFG--- BACU009331/1-1205 PPSRLSVEIT GLEKGTSYKF RVRALNMLGE SEPSAPSRPY AVSGYSGRVY ENSTTRP00000005475/1-1116 PPSRLSVEIT GLEKGTSYKF RVRALNMLGE SEPSAPSRPY AVSGYSGRVY 801 850 ENSP00000418663/1-1114 ERPVAGPYIT FTDAVNETTI MLKWMYIPAS NNNTPIHGFY IYYRPTDSDN ENSBTAP00000018474/1-1115 ERPVAGPYIT FTDAVNETTI MLKWMYIPAS NNNTPIHGFY IYYRPTDSDN bmy_09363T0/1-914 -----GSSLC LSSTHHQAPV AAFGRYIPAS NNNTPIHGFY IYYRPTDSDN BACU009331/1-1205 ERPVAGPYIT FTDAVNETTI MLKWMYIPAS NNNTPIHGFY IYYRPTDSDN ENSTTRP00000005475/1-1116 ERPVAGPYIT FTDAVNETTI MLKWMYIPAS NNNTPIHGFY IYYRPTDSDN 851 900 ENSP00000418663/1-1114 DSDYKKDMVE G-----DKYW HSISHLQPET SYDIKMQCFN EGGESEFSNV ENSBTAP00000018474/1-1115 DSDYKKDMVE G-----DRYW HSISHLQPET SYDIKMQCFN EGGESEFSNV bmy_09363T0/1-914 DSDYKKDMVE GEQHVWDRYW HSISHLQPET SYDIKMQCFN EGGESEFSNV BACU009331/1-1205 DSDYKKDMVE G-----DRYW HSISHLQPET SYDIKMQCFN EGGESEFSNV ENSTTRP00000005475/1-1116 DSDYKKDMVE G-----DRYW HSISHLQPET SYDIKMQCFN EGGESEFSNV 901 950 ENSP00000418663/1-1114 MICETKARKS SGQPGRLPPP TLAPPQPPLP ETIERPVGTG AMVARSSDLP ENSBTAP00000018474/1-1115 MICETKARKS SGQPGRLPPP TLAPPQPPPP ETMERPVGTG AMVARSSDLP bmy_09363T0/1-914 MICETKARKS SGQPGRLPPP TLAPPQLPPH ETIERPVGTG AMVARSSDLP BACU009331/1-1205 MICETKARKS SGQPGRLPPP TLAPPQLPPH ETIERPVGTG AMVARSSDLP ENSTTRP00000005475/1-1116 MICETKARKS SGQPGRLPPP TLAPPQLPPH ETIERPVGTG AMVARSSDLP 951 1000 ENSP00000418663/1-1114 YLIVGVVLGS IVLIIVTFIP FCLWRAWSKQ KHTTDLGFPR SA-LPPSCPY ENSBTAP00000018474/1-1115 YLIVGVVLGS VVLIIVAFIP FCLWRAWSKQ KHTTDLGFPR SALLSSSCQY bmy_09363T0/1-914 YLIVGVVLGS IVLIIVAFIP FCLWRAWSKQ KHTTDLGFPR STLLPSSCQY BACU009331/1-1205 YLIVGVVLGS IVLIIVAFIP FCLWRAWSKQ KHTTDLGFPR SALLPSSCQY ENSTTRP00000005475/1-1116 YLIVGVVLGS IVLIIVAFIP FCLWRAWSKQ KHTTDLGFPR SALLPSSCQY 1001 1050 ENSP00000418663/1-1114 TMVPLGGLPG HQASGQPYLS GISGRACANG IHMNRGCPSA AVGYPGMKPQ ENSBTAP00000018474/1-1115 TMVPLGGLPG HRASGQPYLS GTNGRACANG VRMNRACPVA AMGYPGVKPQ bmy_09363T0/1-914 TMVPLGGLPG HRANGQPYLS GTSGRACTNG VHVNRACPAA AMGYPGMKPQ BACU009331/1-1205 TMVPLGGLPG HRANGQPYLS GTSGRACTNG VHVNRACPAA AMGYPGMKPQ ENSTTRP00000005475/1-1116 TMVPLGGLPG HRANGQPYLS GTSGRACTNG VHVNTACPAA AMGYPGVKPQ 1051 1100 ENSP00000418663/1-1114 QHCPGELQQ- QSDTSSLLRQ THLGNGYDPQ SHQITRGPKS SPDEGSFLYT ENSBTAP00000018474/1-1115 QHCPGELQQ- QEDVNSVLRQ TFLGNGYNPH SPQIPRAPRS NPDEGTFLYT bmy_09363T0/1-914 QRCPGELQQL QDDTNSTLRQ TVLGSGCDPP SHQIPRAPKS NPDEGSFLYT BACU009331/1-1205 QRRPGELQQ- QDDTNSTLRQ TVLGSGCDPP SHQIPRAPRS NPDEGSLLYT ENSTTRP00000005475/1-1116 QRHPGELQQ- QDDTDSTLRQ TVLGSGRDPP SHQIPRAPKS NPDEGSLLYT 1101 1150 ENSP00000418663/1-1114 LPDDSTHQLL QPHHDCCQRQ EQPAAVGQSG VRRAPDSPVL EAVWDPPFHS ENSBTAP00000018474/1-1115 LPDDSAHQLL PPHRDCHHLQ EQPEATGQPG TRSVPQSPGL EAVWDPVFHP bmy_09363T0/1-914 LPDDSARQLL QPRQGCHHLQ EQPAATGQPG MRRVPQGPGL EATWDPLFHP BACU009331/1-1205 LPDDSAHQLL QPRQACHRLQ ERPAATGQPG MRRVPQGPGL EATWDPLFHP ENSTTRP00000005475/1-1116 LPDDSACQLL QPQQDCHHLQ GQPAATGQPG MRRVPQGPGL EATWDPLSHP 1151 1200 ENSP00000418663/1-1114 GPPCCLGLVP VEEVDSPDSC QVSGGDWCPQ HPVGAYVGQE PGMQLSPGPL ENSBTAP00000018474/1-1115 GPPCCLGLVP VEEVDSPDSC PVGRGDWCPQ HPSGSYAGQE LGVRLSPSPP bmy_09363T0/1-914 GPRCCLGLVP VEEVASPDSC PXGRGDWCPQ HPVGTYVGQE LGMRLSPSPP BACU009331/1-1205 GPRCCLGLVP VEEVASPDSC PAGRGDWCPQ HPVGTYVGQE LGMRLSPSPP ENSTTRP00000005475/1-1116 GSRCCLGLVP VEEVASPDSC PAGRGDWCPQ HPVGAYVGQE LGMRLSPSPP 1201 1250 ENSP00000418663/1-1114 VRVSFETPPL TI ENSBTAP00000018474/1-1115 VHVSFETPPP TI bmy_09363T0/1-914 VHVSFETPPP TI BACU009331/1-1205 VHVSFETPPP TI ENSTTRP00000005475/1-1116 VHMSFEIPPP TI