KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:50 2014 Check: 00 .. Name: ENSTTRP00000001802/1-982 Len: 1075 Check: 8785 Weight: 1.00 Name: ENSP00000420294/1-995 Len: 1075 Check: 8718 Weight: 1.00 Name: ENSBTAP00000018519/1-996 Len: 1075 Check: 1978 Weight: 1.00 Name: bmy_16135T0/1-828 Len: 1075 Check: 6545 Weight: 1.00 Name: BACU017827/1-1075 Len: 1075 Check: 5554 Weight: 1.00 // 1 50 ENSTTRP00000001802/1-982 ---------- ---------- ---------- --------MD SEPNPGTSSV ENSP00000420294/1-995 ---------- ---------- ------MAEA EFKDHSTAMD TEPNPGTSSV ENSBTAP00000018519/1-996 ---------- ---------- ------MAEA EFKDHSTAMD SEPNPGTSSV bmy_16135T0/1-828 ---------- ---------- ---------- ---------- ---------- BACU017827/1-1075 MTFMQRIKGK QGTRFAKYGK EYSRIVWKAM RFKDHSTAMD SEPNPGTSSV 51 100 ENSTTRP00000001802/1-982 STTTSSTTTT TITTSSSRMQ QPQISVYSGS DRHAVQVIQQ ALHRPPSSAA ENSP00000420294/1-995 STTTSSTTTT TITTSSSRMQ QPQISVYSGS DRHAVQVIQQ ALHRPPSSAA ENSBTAP00000018519/1-996 STTNSSTTTT TITTSSSRMQ QPQISVYSGS DRHAVQVIQQ ALHRPSSSAA bmy_16135T0/1-828 ---------- ---------- ---------- ---------- ---------- BACU017827/1-1075 STTASSTTTT TITTSSSRMQ QPQISVYSGS DRHAVQVIQQ ALHRPPSSAA 101 150 ENSTTRP00000001802/1-982 QYLQQMYAAQ QQHLMLHTAA LQQQHLSSSQ LQSLAAVQAS LSSGRPPTSP ENSP00000420294/1-995 QYLQQMYAAQ QQHLMLHTAA LQQQHLSSSQ LQSLAAVQAS LSSGRPSTSP ENSBTAP00000018519/1-996 QYLQQMYAAQ QQHLMLHTAA LQQQHLSSSQ LQSLAAVQAS LSSGRPPTSP bmy_16135T0/1-828 ---------- ---------- ---------- ---------- ---------- BACU017827/1-1075 QYLQQMYAAQ QQHLMLHTAA LQQQHLSSSQ LQSLAAVQAS LSSGRPPTSP 151 200 ENSTTRP00000001802/1-982 TGSVTQQSSM SQTS------ ---------- ---------- ---------- ENSP00000420294/1-995 TGSVTQQSSM SQTS------ ---------- ---------- ---------- ENSBTAP00000018519/1-996 TGSVTQQSSM SQTS------ ---------- ---------- ---------- bmy_16135T0/1-828 ---------- ---------- ---------- ---------- ---------- BACU017827/1-1075 TGSVTQQSSM SQTSGKIIRQ VRGDNIPSRE ISLQLLKQCS WKCYGLSISN 201 250 ENSTTRP00000001802/1-982 ---------- -------INL STSPTPAQLI SRSQASSSTS GSITQQTMLL ENSP00000420294/1-995 ---------- -------INL STSPTPAQLI SRSQASSSTS GSITQQTMLL ENSBTAP00000018519/1-996 ---------- -------INL STSPTPAQLI SRSQASSSTS GSITQQTMLL bmy_16135T0/1-828 ---------- ---------- ---------- ---------- -------MLL BACU017827/1-1075 YVSQNQNEIE EDKGVETINL STSPTPAQLI SRSQASSSTS GSITQQTMLL 251 300 ENSTTRP00000001802/1-982 GSTSPTLTAS QAQMYLRAQM LIFTPATTVA AVQSDIPVVS SSSSSSCQSA ENSP00000420294/1-995 GSTSPTLTAS QAQMYLRAQM LIFTPATTVA AVQSDIPVVS SSSSSSCQSA ENSBTAP00000018519/1-996 GSTSPTLTAS QAQMYLRAQM LIFTPATTVA AVQSDIPVVS SSSSSSCQSA bmy_16135T0/1-828 GSTSPTLTAS QAQMYLRAQM LIFTPATTVA AVQSDIPVVS SSSSSSCQSA BACU017827/1-1075 GSTSPTLTAS QAQMYLRAQM LIFTPATTVA AVQSDIPVVS SSSSSSCQSA 301 350 ENSTTRP00000001802/1-982 ATQVQNLTLR SQKLGVLSSS QNGPPKSTSQ TQSLTICHNK TTVTSSKISQ ENSP00000420294/1-995 ATQVQNLTLR SQKLGVLSSS QNGPPKSTSQ TQSLTICHNK TTVTSSKISQ ENSBTAP00000018519/1-996 ATQVQNLTLR SQKLGVLSSS QNGPPKSTSQ TQSLTICHNK TTVTSSKISQ bmy_16135T0/1-828 ATQVQNLTLR SQKLGVLSSS QNGPPKSTSQ TQSLTICHNK TTVTSSKISQ BACU017827/1-1075 ATQVQNLTLR SQKLGVLSSS QNGPPKSTSQ TQSLTICHNK TTVTSSKISQ 351 400 ENSTTRP00000001802/1-982 RDPSPESNKK GESPSLESRS TAVTRTSSIH QLIAPASYPP IQPHPLIKHQ ENSP00000420294/1-995 RDPSPESNKK GESPSLESRS TAVTRTSSIH QLIAPASYSP IQPHSLIKHQ ENSBTAP00000018519/1-996 RDPSPESNKK GESPSLESRS TAVTRTSSIH QLIAPASYPP IQPHPLIKHQ bmy_16135T0/1-828 RDPSPESNKK GESPSLESRS TAVTRTSSIH QLIAPASYPP IQPHPLIKHQ BACU017827/1-1075 RDPSPESNKK GESPSLESRS TAVTRTSSIH QLIAPASYPP IQPHPLIKHQ 401 450 ENSTTRP00000001802/1-982 QIPLHSXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000420294/1-995 QIPLHSPPSK VSHHQLILQQ QQQQIQPITL QNSTQDPPPS QHCIPLQNHG ENSBTAP00000018519/1-996 QIPLHSPPPK VSHHQLILQQ QQQQIQPITL QSPTQDPPPS QHCIPLQNHG bmy_16135T0/1-828 QIPLHSPPPK VSHHQLMLQQ QQQQIQPITL QSPTQDPPPS QHCLPLQNHG BACU017827/1-1075 QIPLHSPPPK VSHHQLMLQQ QQQQIQPITL QSPTQDPPPS QHCLPLQNHG 451 500 ENSTTRP00000001802/1-982 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000420294/1-995 LPPAPSNAQS QHCSPIQSHP SPLTVSPNQS QSAQQSVVVS PPPPHSPSQS ENSBTAP00000018519/1-996 LPPAPSSAQS QHCSPIQSHP PPLAMSPSQS QSAQQSVVVS PPPPHSPSQS bmy_16135T0/1-828 LPPAPSSAQS QHCSPIQSHP PPLTVSPSQS QSAQQSVVVS PPPPHSPSQS BACU017827/1-1075 LPPAPSSAQS QHCSPIQSHP PPLTVSPSQS QSAQQSVVVS PPPPHSPSQS 501 550 ENSTTRP00000001802/1-982 XXXXXXXXXX XXPHPLVSSA LQPGSNLQQS TANQVQRTAQ LNLPSHLPLP ENSP00000420294/1-995 PTIIIHPQAL IQPHPLVSSA LQPGPNLQQS TANQVQATAQ LNLPSHLPLP ENSBTAP00000018519/1-996 PTIIIHPQAL IQPHPLVSSA LQPGSNLQQS TANQVQPTTQ LNLSSHLPLP bmy_16135T0/1-828 PTIIIHPQAL IQPHPLVSSA LQPGSNLQQS TANQVQPTAQ LNLPSHLPLP BACU017827/1-1075 PTIIIHPQAL IQPHPLVSSA LQPGSNLQQS TANQVQPTAQ LNLPSHLPLP 551 600 ENSTTRP00000001802/1-982 ASPVVHIGPV QQSTLVSPGQ QIVSPASHQQ YSTLQSSPIP IATPPQMSTS ENSP00000420294/1-995 ASPVVHIGPV QQSALVSPGQ QIVSP-SHQQ YSSLQSSPIP IASPPQMSTS ENSBTAP00000018519/1-996 ASPVVHIGPV QQSTLVSPGQ QIVSPTSHQQ YSTLQSSPIP IATPPQMSTS bmy_16135T0/1-828 ASPVVHIGPV QQSALVSPGQ QIVSPASHQQ YSTLQSSPIP IATPPQMSTS BACU017827/1-1075 ASPVVHIGPV QQSALVSPGQ QIVSPASHQQ YSTLQSSPIP IATPPQMSTS 601 650 ENSTTRP00000001802/1-982 PPVQIPPLPL QFMQSLQVQP EILSQGQVLV QNALVSEEEL PAAEALVQLP ENSP00000420294/1-995 PPAQIPPLPL QSMQSLQVQP EILSQGQVLV QNALVSEEEL PAAEALVQLP ENSBTAP00000018519/1-996 PPAQIPPLPL QSMQSLQVQP EILSQGQVLV QNALVSEEEL PAAEALVQLP bmy_16135T0/1-828 PPAQIPPLPL QSMQSLQVQP EILSQGQVLV QNALVSEEEL PAAEALVQLP BACU017827/1-1075 PPAQIPPLPL QSMQSLQVQP EILSQGQVLV QNALVSEEEL PAAEALVQLP 651 700 ENSTTRP00000001802/1-982 FQILPPPQTV AVNLQVQPPA SVDPPVVYQV EDVCEEEMPE ESEECVRMDR ENSP00000420294/1-995 FQTLPPPQTV AVNLQVQPPA PVDPPVVYQV EDVCEEEMPE ESDECVRMDR ENSBTAP00000018519/1-996 FQTLPPPQTV AVNLQVQPPA PVDPPVVYQV EDVCEEEMPE ESEDCVRMDR bmy_16135T0/1-828 FQTLPPPQTV AVNLQVQPPA SVDPPVVYQV EDVCEEEMPE ESEECVRMDR BACU017827/1-1075 FQTLPPPQTV AVNLQVQPPA SVDPPVVYQV EDVCEEEMPE ESEECVRMDR 701 750 ENSTTRP00000001802/1-982 TPPPPTLSPA AITVGRGEDL TSEHPLLEQV ELPVVASVSA SVIKSPSDPS ENSP00000420294/1-995 TPPPPTLSPA AITVGRGEDL TSEHPLLEQV ELPAVASVSA SVIKSPSDPS ENSBTAP00000018519/1-996 TPPPPTLSPA AITVGRGEDL TSEHPLLEQV ELPAVASVSA SVIKSPSDPS bmy_16135T0/1-828 TPPPPTLSPA AITVGRGEDL TSEHPLLEQV ELPVVASVSA SVIKSPSDPS BACU017827/1-1075 TPPPPTLSPA AITVGRGEDL TSEHPLLEQV ELPVVASVSA SVIKSPSDPS 751 800 ENSTTRP00000001802/1-982 HVSVPPPPLL LPAATTRSNS TSMLGSIPSV ENKPPQAIVK PQILTHVIEG ENSP00000420294/1-995 HVSVPPPPLL LPAATTRSNS TSMHSSIPSI ENKPPQAIVK PQILTHVIEG ENSBTAP00000018519/1-996 HVSVPPPPLL LPAATTRSNS TSMPSSVPSV ENKPPQAIVK PQILTHVIEG bmy_16135T0/1-828 HVSVPPPPLL LPAATTRSNS TSMPSSIPSV ENKPPQAIVK PQILTHVIEG BACU017827/1-1075 HVSVPPPPLL LPAATTRSNS TSMPSSIPSV ENKPPQAIVK PQILTHVIEG 801 850 ENSTTRP00000001802/1-982 FVIQEGLEPF PVSR-SLLIE QPVKKRPILD NQVINSVC-Q PELQNNAKHA ENSP00000420294/1-995 FVIQEGLEPF PVSRSSLLIE QPVKKRPLLD NQVINSVCVQ PELQNNTKHA ENSBTAP00000018519/1-996 FVIQEGLEPF PVSRSSLLIE QPVKRRPVLD NQVINSVCVQ PELQNNAKHA bmy_16135T0/1-828 FVIQEGLEPF PVSRSSLLIE QPVKKRPILD NQVINSVCVQ PELQNNAKHA BACU017827/1-1075 FVIQEGLEPF PVSRSSLLIE QPVKKRPILD NQVINSVCVQ PELQNNAKHA 851 900 ENSTTRP00000001802/1-982 DNSSDTEMED MIAEEALEEM DSELLKCEFC GKMGYANEFL RSKRFCTMSC ENSP00000420294/1-995 DNSSDTEMED MIAEETLEEM DSELLKCEFC GKMGYANEFL RSKRFCTMSC ENSBTAP00000018519/1-996 DNSSDTEMED MIAEETLEEM DSELLKCEFC GKMGYANEFL RSKRFCTMSC bmy_16135T0/1-828 DNSSDTEMED MIAEEALEEM DSELLKCEFC GKMGYANEFL RSKRFCTMSC BACU017827/1-1075 DNSSDTEMED MIAEEALEEM DSELLKCEFC GKMGYANEFL RSKRFCTMSC 901 950 ENSTTRP00000001802/1-982 AKRYNVSCSK KFALSRWNRK PDNQSLGHRG RRPSGPDGAA REHILRQLPI ENSP00000420294/1-995 AKRYNVSCSK KFALSRWNRK PDNQSLGHRG RRPSGPDGAA REHILRQLPI ENSBTAP00000018519/1-996 AKRYNVSCSK KFALSRWNRK PDNQSLGHRG RRPSGPDGAA REHILRQLPI bmy_16135T0/1-828 AKRYNVSCSK KFALSRWSRK PDNQSLGHRG RRPSGPDGAA REHILRQLPI BACU017827/1-1075 AKRYNVSCSK KFALSRWNRK PDNQSLGHRG RRPSGPDGAA REHILRQLPI 951 1000 ENSTTRP00000001802/1-982 TYPSAEEDLA SHEDSVPSAM TTRLRRQSER ERERELRDVR MRKMPENSDL ENSP00000420294/1-995 TYPSAEEDLA SHEDSVPSAM TTRLRRQSER ERERELRDVR IRKMPENSDL ENSBTAP00000018519/1-996 TYPSAEEDLA SHEDAVPSAM TTRLRRQSER ERERELRDVR MRKMPENSGL bmy_16135T0/1-828 TYPSAEEDLA SHEDSVPSAM TTRLRRQSER ERERELRDVR MRKMPENSDL BACU017827/1-1075 TYPSAEEDLA SHEDSVPSAM TTRLRRQSER ERERELRDVR MRKMPENSDL 1001 1050 ENSTTRP00000001802/1-982 LPVAQTEPSV WTVDDVWAFI HSLPGCQDIA DEFRAQEIDG QALLLLKEDH ENSP00000420294/1-995 LPVAQTEPSI WTVDDVWAFI HSLPGCQDIA DEFRAQEIDG QALLLLKEDH ENSBTAP00000018519/1-996 LPVAQTEPSI WTVDDVWAFI HSLPGCQDIA DEFRAQEIDG QALLLLKEDH bmy_16135T0/1-828 LPVAQTEPSV WTVDDVWAFI HSLPGCQDIA DEFRAQEIDG QALLLLKEDH BACU017827/1-1075 LPVAQTEPSV WTVDDVWAFI HSLPGCQDIA DEFRAQEIDG QALLLLKEDH 1051 1100 ENSTTRP00000001802/1-982 LMSAMNIKLG PALKICARIN SLKES ENSP00000420294/1-995 LMSAMNIKLG PALKICARIN SLKES ENSBTAP00000018519/1-996 LMSAMNIKLG PALKICARIN SLKES bmy_16135T0/1-828 LMSAMNIKLG PALKICARIN SLKES BACU017827/1-1075 LMSAMNIKLG PALKICARIN SLKES