KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:52 2014 Check: 00 .. Name: ENSTTRP00000010644/1-1039 Len: 1066 Check: 7777 Weight: 1.00 Name: ENSP00000257215/1-1042 Len: 1066 Check: 6013 Weight: 1.00 Name: ENSBTAP00000018523/1-1041 Len: 1066 Check: 2906 Weight: 1.00 Name: BACU005391/1-759 Len: 1066 Check: 6996 Weight: 1.00 Name: bmy_17463T0/1-772 Len: 1066 Check: 8049 Weight: 1.00 // 1 50 ENSTTRP00000010644/1-1039 MPGIVVFRRR WSVGSDDLVL PAI-LFXXXX XXFVILSVVL FGLVYNPNEA ENSP00000257215/1-1042 MPGIVVFRRR WSVGSDDLVL PAIFLFLLHT TWFVILSVVL FGLVYNPHEA ENSBTAP00000018523/1-1041 MPGIVVFRRR WSVGSDDLVL PAIFLFLLHT TWFVILSVVL FGLVYNPDEA BACU005391/1-759 MPGIVVFRRR WSVGSDDLVL PAIFLFLLHT TWFVILSVVL FGLVYNPHEA bmy_17463T0/1-772 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000010644/1-1039 CSLNLVDHGR GYLGILLSCM IAEMAIIWLS MRGGILYTEP RESMQYVLYV ENSP00000257215/1-1042 CSLNLVDHGR GYLGILLSCM IAEMAIIWLS MRGGILYTEP RDSMQYVLYV ENSBTAP00000018523/1-1041 CSLNLVDHGR GYLGILLSCM IAEMAIIWLS MRGGILYTEP RESMQYVLYV BACU005391/1-759 CSLNLVDHGR GYLGILLSCM IAEMAIIWLS MRGGILYTEP RESMQYVLYV bmy_17463T0/1-772 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000010644/1-1039 RLAILVIEFI YAIVGIVWLT QYYTSCNDLT AKNVTLGMVV CNWVVILSVC ENSP00000257215/1-1042 RLAILVIEFI YAIVGIVWLT QYYTSCNDLT AKNVTLGMVV CNWVVILSVC ENSBTAP00000018523/1-1041 RLAILVIEFI YAIVGIVWLT QYYTSCNDLT AKNVTLGMVV CNWVVILSVC BACU005391/1-759 RLAILVIEFI YAIVGIVWLT QYYTSCNDLT AKNVTLGMVV CNWVVILSVC bmy_17463T0/1-772 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000010644/1-1039 ITVLCVFDPT GRTFVKLRAT KRRQRNLRTY NLRHRLEEGQ ATSWSRRLKV ENSP00000257215/1-1042 ITVLCVFDPT GRTFVKLRAT KRRQRNLRTY NLRHRLEEGQ ATSWSRRLKV ENSBTAP00000018523/1-1041 ITVLCVFDPT GRTFVKLRAT KRRQRNLRTY NLRHRLEEGQ ATSWSRRLKV BACU005391/1-759 ITVLCVFDPT GRTFVKLRAT KRRQRNLRTY NLRHRLEEGQ ATSWSRRLKV bmy_17463T0/1-772 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000010644/1-1039 FLCCTRTKDS QSXXXXEIAY LFAEFFRDLD IVPSDIIAGL VLLRQRQRAK ENSP00000257215/1-1042 FLCCTRTKDS QSDAYSEIAY LFAEFFRDLD IVPSDIIAGL VLLRQRQRAK ENSBTAP00000018523/1-1041 FLCCTRTKDS QSDAYSEIAY LFAEFFRDLD IVPSDIIAGL VLLRQRQRAK BACU005391/1-759 FLCCTRTKDS QSDAYSEIAY LFAEFFRDLD IVPSDIIAGL VLLRQRQRAK bmy_17463T0/1-772 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000010644/1-1039 RNAVLDEANN DILAFLSGMP VTRNTKYLDL KNSQEMLRYK EVCYYMLFAL ENSP00000257215/1-1042 RNAVLDEANN DILAFLSGMP VTRNTKYLDL KNSQEMLRYK EVCYYMLFAL ENSBTAP00000018523/1-1041 RNAVLDEANN DILAFLSGMP VTRNTKYLDL KNSHEMLRYK EVCYYMLFAL BACU005391/1-759 RNAVLDEANN DILAFLSGMP VTRNTKYLDL KNSQEMLRYK EVCYYMLFAL bmy_17463T0/1-772 ---------- --------MP VTRNTKYLDL KNSQEMLRYK EVCYYMLFAL 301 350 ENSTTRP00000010644/1-1039 AAYGWPMYLM RKPACGLCQL ARSCSCCLCP TRPRFAPGVT IEEDNCCGCN ENSP00000257215/1-1042 AAYGWPMYLM RKPACGLCQL ARSCSCCLCP ARPRFAPGVT IEEDNCCGCN ENSBTAP00000018523/1-1041 AAYGWPMYLM RKPACGLCQL ARSCSCCLCP ARPRFAPGVT IEEDNCCGCN BACU005391/1-759 AAYGWPMYLM RKPACGLCQL ARSCSCCLCP ARPRFAPGVT IEEDNCCGCN bmy_17463T0/1-772 AAYGWPMYLM RKPACGLCQL ARSCSCCLCP ARPRFAPGVT IEEDNCCGCN 351 400 ENSTTRP00000010644/1-1039 AIAIRRHFLD ENMTAVDIVY TSCHDAVYET PFYVAVDHDK KKVVISIRGT ENSP00000257215/1-1042 AIAIRRHFLD ENMTAVDIVY TSCHDAVYET PFYVAVDHDK KKVVISIRGT ENSBTAP00000018523/1-1041 AIAIRRHFLD ENMTAVDIVY TSCHDAVYET PFYVAVDHDK KKVVISIRGT BACU005391/1-759 AIAIRRHFLD ENMTAVDIVY TSCHDAVYET PFYVAVDHDK KKVVISIRGT bmy_17463T0/1-772 AIAIRRHFLD ENMTAVDIVY TSCHDAVYET PFYVAVDHDK KKVVISIRGT 401 450 ENSTTRP00000010644/1-1039 LSP------- ---------- ------KDAL TDLTGDAERL PVEGHHGTWL ENSP00000257215/1-1042 LSP------- ---------- ------KDAL TDLTGDAERL PVEGHHGTWL ENSBTAP00000018523/1-1041 LSP------- ---------- ------KDAL TDLTGDAERL PVEGHHGTWL BACU005391/1-759 LSPKPPRVPA SFFLFSVPLL TVLSPHKDAL TDLTGDAERL PVEGHHGTWL bmy_17463T0/1-772 LSP------- ---------- ------KDAL TDLTGDAERL PVEGHHGTWL 451 500 ENSTTRP00000010644/1-1039 GHKGMVLSAE YIKKKLEQEM VLSQAFGRDL GRGTKHYGLI VVGHSLGAGT ENSP00000257215/1-1042 GHKGMVLSAE YIKKKLEQEM VLSQAFGRDL GRGTKHYGLI VVGHSLGAGT ENSBTAP00000018523/1-1041 GHKGMVLSAE YIKKKLEQEM VLSQAFGRDL GRGTKHYGLI VVGHSLGAGT BACU005391/1-759 GHKGMVLSAE YIKKKLEQEM VLSQAFGRDL GRGTKHYGLI VVGHSLGAGT bmy_17463T0/1-772 GHKGMVLSAE YIKKKLEQEM VLSQAFGRDL GRGTKHYGLI VVGHSLGAGT 501 550 ENSTTRP00000010644/1-1039 AAILSFLLRP QYPTLKCFAY SPPGGLLSED AMEYSKEFVT AVVLGKDLVP ENSP00000257215/1-1042 AAILSFLLRP QYPTLKCFAY SPPGGLLSED AMEYSKEFVT AVVLGKDLVP ENSBTAP00000018523/1-1041 AAILSFLLRP QYPTLKCFAY SPPGGLLSED AMEYSKEFVT AVVLGKDLVP BACU005391/1-759 AAILSFLLRP QYPTLKCFAY SPPGGLL--- ---------- ---------- bmy_17463T0/1-772 AAILSFLLRP QYPTLKCFAY SPPGGLLSED AMEYSKEFVT AVVLGKDLVP 551 600 ENSTTRP00000010644/1-1039 RIGLSQLEGF RRQLLDVLQR STKPKWRIIV GATKCIPKSE LPEELEVTTL ENSP00000257215/1-1042 RIGLSQLEGF RRQLLDVLQR STKPKWRIIV GATKCIPKSE LPEEVEVTTL ENSBTAP00000018523/1-1041 RIGLSQLEGF RRQLLDVLQR STKPKWRIIV GATKCIPKSE LPEEVEVTTL BACU005391/1-759 RIGLSQLEGF RRQLLDVLQR STKPKWRIIV GATKCIPKSE LPEEVEVTTL bmy_17463T0/1-772 RIGLSQLEGF RRQLLDVLQR STKPKWRIIV GATKCIPKSE LPEEVEVTTL 601 650 ENSTTRP00000010644/1-1039 ASTRLWTHPS DLTIALSAST PLYPPGRIIH VVHNHPAEQC XXXXXXXXXX ENSP00000257215/1-1042 ASTRLWTHPS DLTIALSAST PLYPPGRIIH VVHNHPAEQC CCCEQEEPTY ENSBTAP00000018523/1-1041 ASTRLWTHPS DLTIALSAST PLYPPGRIIH VVHNHPAEQC CCCEQEEPTY BACU005391/1-759 ASTRLWTHPS DLTIALSAST PLYPPGRIIH VVHNHPAEQC CCCEQEEPTY bmy_17463T0/1-772 ASTRLWTHPS DLTIALSAST PLYPPGRIIH VVHNHPAEQC CCCEQEEPTY 651 700 ENSTTRP00000010644/1-1039 XXXXXXXXXX XEVIISPAML HEHLPYVVME GLNKVLENYN KGKTALLSAA ENSP00000257215/1-1042 FAIWGDNKAF NEVIISPAML HEHLPYVVME GLNKVLENYN KGKTALLSAA ENSBTAP00000018523/1-1041 FAIWGDNKAF NEVIISPAML HEHLPYVVME GLNKVLENYN KGKTALLSAA BACU005391/1-759 FAIWGDNKAF NEVIISPAML HEHLPYVVME GLNKVLENYN KGKTALLSAA bmy_17463T0/1-772 FAIWGDNKAF NEVIISPAML HEHLPYVVME GLNKVLENYN KGKTALLSAA 701 750 ENSTTRP00000010644/1-1039 KVMVSPTEVD LTPELIFQQQ PLPTGPPVPA GLALELPAAD HRNSSVRSKS ENSP00000257215/1-1042 KVMVSPTEVD LTPELIFQQQ PLPTGPPMPT GLALELPTAD HRNSSVRSKS ENSBTAP00000018523/1-1041 KVMVSPTEVD LTPELIFQQQ PLPTGPPVPA GLALELPAAD HRNSSIRSKS BACU005391/1-759 KVMVSPTEVD LTPELIFQQQ PLPTGHPVPA GLALELPAAD HRNSSVRSKS bmy_17463T0/1-772 KVMVSPTEVD LTPELIFQQQ PLPTGPPVPA GLALELPAAD HRNSSVRSKS 751 800 ENSTTRP00000010644/1-1039 QSEMSLEGFS EGQLLSPVAA --AARQDPVE LLLLSTQERL AAELQARRAP ENSP00000257215/1-1042 QSEMSLEGFS EGRLLSPVVA A-AARQDPVE LLLLSTQERL AAELQARRAP ENSBTAP00000018523/1-1041 QSEMSLEGFS EGRLLSPVAA ASAARQDPVE LLLLSTQERL AAELQARRAP BACU005391/1-759 QSEMSLEGFS EGQLLSPVAA --AARQDPVE LLLL------ ---------- bmy_17463T0/1-772 QSEMSLEGFS EGQLLSPVAA --AARQDPVE LLLLSTQERL AAELQARRAP 801 850 ENSTTRP00000010644/1-1039 LATMESLSDT ESLYSFDSRR SSGFRSIRGS PSLHAVLERD EGHLFYIDPA ENSP00000257215/1-1042 LATMESLSDT ESLYSFDSRR SSGFRSIRGS PSLHAVLERD EGHLFYIDPA ENSBTAP00000018523/1-1041 LATMESLSDT ESLYSFDSRR SSGFRSIRGS PSLHAVLERD EGHLFYIDPA BACU005391/1-759 ---------- ---------- ---------- ---------- ---------- bmy_17463T0/1-772 LATMESLSDT ESLYSFDSRR SSGFRSIRGS PSLHAVLERD EGHLFYIDPA 851 900 ENSTTRP00000010644/1-1039 IPEENPSLSS RTELLAADSL SKHSQDTQPL EATLGSGGIT PERPPSAAAH ENSP00000257215/1-1042 IPEENPSLSS RTELLAADSL SKHSQDTQPL EAALGSGGVT PERPPSAAAN ENSBTAP00000018523/1-1041 IPEENPSLSS RTELLAADSL SKHSQDTQPL EAALGSGGVT PERPPSAAAN BACU005391/1-759 ---------- ---------- ---------- ---------- ---------- bmy_17463T0/1-772 IPEENPSLSS RTELLAADSL SKHSQDTQPL EATLGSGGIT PERPPSAAAH 901 950 ENSTTRP00000010644/1-1039 DELEEGGGGG AAPRS-GELA LHDGRLGDSP SPQVLEFAEF IDSXXXXXXX ENSP00000257215/1-1042 DEEEEVGGGG GGPASRGELA LHNGRLGDSP SPQVLEFAEF IDSLFNLDSK ENSBTAP00000018523/1-1041 EEPEE-GGGG AAPRS-GELA LQEGRLGDSP SPQVLEFAEF IDSLFNLDSK BACU005391/1-759 ---------- ---------- ---------- ---------- ---------- bmy_17463T0/1-772 DELEEGGGGG AAPRS-GELA LHDGRLGDSP SPQVLEFAEF IDSLFNLDSK 951 1000 ENSTTRP00000010644/1-1039 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXLF ENSP00000257215/1-1042 SSSFQDLYCM VVPESPTSDY AEGPKSPSQQ EILLRAQFEP NLVPKPPRLF ENSBTAP00000018523/1-1041 SSSFQDLYCM VVPESPTSDY AEGPKSPSQQ EILLRAQFEP NLVPKPPRLF BACU005391/1-759 ---------- ---------- ---------- ---------- ---------- bmy_17463T0/1-772 SSSFQDLYCM VVPESPTSDY AEGPKSPSQQ EILLRAQFEP NLVPKPPRLF 1001 1050 ENSTTRP00000010644/1-1039 AGSADPSSGI SLSPSFPLSS SGELMDLTPT GLSSQECLAV DKIRTSTPTG ENSP00000257215/1-1042 AGSADPSSGI SLSPSFPLSS SGELMDLTPT GLSSQECLAA DKIRTSTPTG ENSBTAP00000018523/1-1041 AGSADPSSGI SLSPSFPLSS SGELMDLTPT GLSSQECLAV DKVRTSTPAG BACU005391/1-759 ---------- ---------- ---------- ---------- ---------- bmy_17463T0/1-772 AGSADPSSGI SLSPSFPLSS SGELMDLTPT GLSSQECLAV DKIRTSTPTG 1051 1100 ENSTTRP00000010644/1-1039 HGASPAKQDD LVISAR ENSP00000257215/1-1042 HGASPAKQDE LVISAR ENSBTAP00000018523/1-1041 RGASPTKQDD LVISAR BACU005391/1-759 ---------- ------ bmy_17463T0/1-772 HGASPAKQDD LVISAR