KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:00 2014 Check: 00 .. Name: bmy_16339T0/1-532 Len: 781 Check: 4469 Weight: 1.00 Name: ENSP00000469413/1-591 Len: 781 Check: 7864 Weight: 1.00 Name: ENSBTAP00000018545/1-592 Len: 781 Check: 302 Weight: 1.00 Name: BACU008326/1-570 Len: 781 Check: 4213 Weight: 1.00 Name: ENSTTRP00000014185/1-591 Len: 781 Check: 1072 Weight: 1.00 // 1 50 bmy_16339T0/1-532 MFGKKKKRVE ISAPSNFEHR VHTGFDQHEQ KFTGLPRQWQ SLIEESARRP ENSP00000469413/1-591 MFGKRKKRVE ISAPSNFEHR VHTGFDQHEQ KFTGLPRQWQ SLIEESARRP ENSBTAP00000018545/1-592 MFGKKKKRVE ISAPSNFEHR VHTGFDQHEQ KFTGLPRQWQ SLIEESARRP BACU008326/1-570 MFGKKKKRVE ISAPSNFEHR VHTGFDQHEQ KFTGLPRQWQ SLIEESARRP ENSTTRP00000014185/1-591 MFGKKKKRVE ISAPSNFEHR VHTGFDQHEQ KFTGLPRQWQ SLIEESARRP 51 100 bmy_16339T0/1-532 KPLVDPACIT SIQPGAPKMA GCWGRGSRGL PGPAPPPPTP PPPPPSPVII ENSP00000469413/1-591 KPLVDPACIT SIQPGAPK-- ---------- ---------- ---------- ENSBTAP00000018545/1-592 KPLIDPACIT SIQPGAPK-- ---------- ---------- ---------- BACU008326/1-570 KPLVDPACIT SIQPGAPK-- ---------- ---------- ---------- ENSTTRP00000014185/1-591 KPLIDPACIT SIQPGAPK-- ---------- ---------- ---------- 101 150 bmy_16339T0/1-532 PWHFFILSLS CLCVCCVVLS SCVGYTSCVP LVLARPPPCH CPGPQTIVRG ENSP00000469413/1-591 ---------- ---------- ---------- ---------- -----TIVRG ENSBTAP00000018545/1-592 ---------- ---------- ---------- ---------- -----TIVRG BACU008326/1-570 ---------- ---------- ---------- ---------- -----TIVRG ENSTTRP00000014185/1-591 ---------- ---------- ---------- ---------- -----TIVRG 151 200 bmy_16339T0/1-532 SKGAKDGALT LLLDEFENMS VTRSNSLRRD SPPPPARARQ ENGMPVEQAA ENSP00000469413/1-591 SKGAKDGALT LLLDEFENMS VTRSNSLRRD SPPPPARARQ ENGMPEEPAT ENSBTAP00000018545/1-592 SKGAKDGALT LLLDEFENMS VTRSNSLRRD SPPPPARARQ ENGMPAEQAA BACU008326/1-570 SKGAKDGALT LLLDEFENMS VTRSNSLRRD SPPP---ARQ ENGMPVEQAA ENSTTRP00000014185/1-591 SKGAKDGALT LLLDEFENMS VTRSNSLRRD SPPPPARARQ ENGMPVEQAT 201 250 bmy_16339T0/1-532 TARGGPEKAG GQGRVAGRSE AGGSSGDRRR VGPDKRPKSS REGSGGPQES ENSP00000469413/1-591 TARGGPGKAG SRGRFAGHSE AGGGSGDRRR AGPEKRPKSS REGSGGPQES ENSBTAP00000018545/1-592 TARGGPEKAG SQGRGASHGE AGGSTGDRRR AGPDKRPKSS REGSGGPQES BACU008326/1-570 TARGGPEKAG GQGRVAGRSE AGGSSGDRRR VGPDKRPKSS REGSGGPQES ENSTTRP00000014185/1-591 TARGGPEKAG GQGRVAGRSE AGGSSGDRRR VGPDKRPKSS REGSGGPQES 251 300 bmy_16339T0/1-532 SRDKRPLSGP DVGTPHQPAS LPSGAKVAAG RPFNTYPRAD TDHPSRGAQV ENSP00000469413/1-591 SRDKRPLSGP DVGTP-QPAG LASGAKLAAG RPFNTYPRAD TDHPSRGA-- ENSBTAP00000018545/1-592 SRDKRPLSGP DVATPHQPAS LASGAKVAAG RPFNTYPRAD TDHPSRGT-- BACU008326/1-570 SRDNRPLSGP DVGTPHQPAG LASGAKVAAG RPFNTYPRAD TDHPSRGA-- ENSTTRP00000014185/1-591 SRDKRPLSGP DVGTPHQPAG LASGAKVAAG RPFNTYPRAD TDHPSRGA-- 301 350 bmy_16339T0/1-532 TAPPAPGPPH CPLARSFPVA THRLQPVPSP PSISILTTMC LSHSWGPCPS ENSP00000469413/1-591 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018545/1-592 ---------- ---------- ---------- ---------- ---------- BACU008326/1-570 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014185/1-591 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_16339T0/1-532 GPSTDSRLSF LLQGEPHNVA PNGPSVGGLA VPQ-SSSASR PPARAHGPPS ENSP00000469413/1-591 ---------- --QGEPHDVA PNGPSAGGLA IPQSSSSSSR PPTRARGAPS ENSBTAP00000018545/1-592 ---------- --QGEPHNMA PNGPSVGGLA VPQ--SSSSR PTARAHGAPS BACU008326/1-570 ---------- --QGEPHNVA PNGPS----- ---------- ---------- ENSTTRP00000014185/1-591 ---------- --QGEPHNVA SNGPSVGXXX XXXXXXXXXX XXXXXXXXXX 401 450 bmy_16339T0/1-532 PGVLGPHASE PQLAPPTRTL AAPPAPPAPG PPGPRSPQRE PQRVSHEQFR ENSP00000469413/1-591 PGVLGPHASE PQLAPPA--- CTPAAPAVPG PPGPRSPQRE PQRVSHEQFR ENSBTAP00000018545/1-592 PGVLGPHASE PQLAPPARAL AAPAGPP-PG PPGPRSPQRE PQRVSHEQFR BACU008326/1-570 ---------- ---------- ---------- ---------- --RVSHEQFR ENSTTRP00000014185/1-591 XXXXXXXXXX XXXXXXX--- XXXXXXXXXX XXXXRSPQRE PQRVSHEQFR 451 500 bmy_16339T0/1-532 AALQLVVDPG DPRSYLDNFI KIGEGSTGIV CIATVRSSGR LVAVKKMDLR ENSP00000469413/1-591 AALQLVVDPG DPRSYLDNFI KIGEGSTGIV CIATVRSSGK LVAVKKMDLR ENSBTAP00000018545/1-592 AALQLVVDPG DPRSYLDNFI KIGEGSTGIV CIATVRSSGR LVAVKKMDLR BACU008326/1-570 AALQLVVDPG DPRSYLDNFI KIGEGSTGIV CIATVRSSGR LVAVKKMDLR ENSTTRP00000014185/1-591 AALQLVVDPG DPRSYLDNFI KIGEGSTGIV CIATVRSSGR LVAVKKMDLR 501 550 bmy_16339T0/1-532 KQQRRELLFN EVGLL----- ---------- ---------- ---------- ENSP00000469413/1-591 KQQRRELLFN EVVIMRDYQH ENVVEMYNSY LVGDELWVVM EFLEGGALTD ENSBTAP00000018545/1-592 KQQRRELLFN EVVIMRDYQH ENVVEMYNSY LVGDELWVVM EFLEGGALTD BACU008326/1-570 KQQRRELLFN EVVIMRDYQH ENVVEMYNSY LVGDELWVVM EFLEGGALTD ENSTTRP00000014185/1-591 KQQRRELLFN EVVIMRDYQH ENVVEMYNSY LVGDELWVVM EFLEGGALTD 551 600 bmy_16339T0/1-532 ---------- ---------- ---------- ---------- ---------- ENSP00000469413/1-591 IVTHTRMNEE QIAAVCLAVL QALSVLHAQG VIHRDIKSDS ILLTHDGRVK ENSBTAP00000018545/1-592 IVTHTRMNEE QIAAVCLAVL QALSVLHAQG VIHRDIKSDS ILLTHDGRVK BACU008326/1-570 IVTHTRMNEE QIAAVCLAVL QALSVLHAQG VIHRDIKSDS ILLTHDGRVK ENSTTRP00000014185/1-591 IVTHTRMNEE QIAAVCLAVL QALSVLHAQG VIHRDIKSDS ILLTHDGRVK 601 650 bmy_16339T0/1-532 ---------- ---------- ---------- --------PP ---------- ENSP00000469413/1-591 LSDFGFCAQV SKEVPRRKSL VGTPYWMAPE LISRLPYGPE VDIWSLGIMV ENSBTAP00000018545/1-592 LSDFGFCAQV SKEVPRRKSL VGTPYWMAPE LISRLPYGPE VDIWSLGVMV BACU008326/1-570 LSDFGFCAQV SKEVPRRKSL VGTPYWMAPE LISRLPYGPE VDIWSLGVMV ENSTTRP00000014185/1-591 LSDFGFCAQV SKEVPRRKSL VGTPYWMAPE LISR-PYGPE VDIWSLGVMV 651 700 bmy_16339T0/1-532 -------P-- ---------- ---------- ---------- ---------- ENSP00000469413/1-591 IEMVDGEP-- ---------- ---------- ---------- ---------- ENSBTAP00000018545/1-592 IEMVDGEP-- ---------- ---------- ---------- ---------- BACU008326/1-570 IEMVDGEPPY FNEPPLKAMK MIRDNLPPRL KNLHKVDIWS LGVMVIEMVD ENSTTRP00000014185/1-591 IEMVDGEP-- ---------- ---------- ---------- ---------- 701 750 bmy_16339T0/1-532 ---PPFTSPP --------GA PPPR------ ------GF-- ---------- ENSP00000469413/1-591 ---PYFNEPP LKAMKMIRDN LPPRLKNLHK VSPSLKGFLD RLLVRDPAQR ENSBTAP00000018545/1-592 ---PYFNEPP LKAMKMIRDN LPPRLKNLHK VSPSLKGFLD RLLVRDPAQR BACU008326/1-570 GEPPYFNEPP LKAMKMIRDN LPPRLKNLHK VSPSLKGFLD RLLVRDPAQR ENSTTRP00000014185/1-591 ---PYFNEPP LKAMKMIRDN LPPRLKNLHK VSPSLKGFLD RLLVRDPAQR 751 800 bmy_16339T0/1-532 ---------- ---------- ---------- - ENSP00000469413/1-591 ATAAELLKHP FLAKAGPPAS IVPLMRQNRT R ENSBTAP00000018545/1-592 ATAAELLKHP FLAKAGPPAS IVPLMRQNRT R BACU008326/1-570 ATAAELLKHP FLAKAGPPAS IVPLMRQNRT R ENSTTRP00000014185/1-591 ATAAELLKHP FLAKAGPPAS IVPLMRQNRT R