KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:14 2014 Check: 00 .. Name: ENSTTRP00000005506/1-1428 Len: 1549 Check: 1604 Weight: 1.00 Name: ENSP00000400887/1-1433 Len: 1549 Check: 1313 Weight: 1.00 Name: ENSBTAP00000018635/1-1477 Len: 1549 Check: 7491 Weight: 1.00 Name: bmy_10928T0/1-1109 Len: 1549 Check: 1804 Weight: 1.00 Name: BACU016957/1-1484 Len: 1549 Check: 6112 Weight: 1.00 // 1 50 ENSTTRP00000005506/1-1428 MWSLPASEGE SATAHFFLGA GDEGLGTRGI GMRTEESDSE LLEDEEDEVP ENSP00000400887/1-1433 MWSLTASEGE STTAHFFLGA GDEGLGTRGI GMRPEESDSE LLEDEEDEVP ENSBTAP00000018635/1-1477 MWSLPASEGE SATAHFFLGA GDEGLGTRGL GMRPEESDSE LLEDEEDEVP bmy_10928T0/1-1109 MWSLPASEGE SATAHFFLGA GDEGLGTRGI GMRTEESDSE LLEDEEDEVP BACU016957/1-1484 MWSLPTSEGE SATAHFFLGA GDEGLGTRGI GMRTEESDSE LLEDEEDEVP 51 100 ENSTTRP00000005506/1-1428 PEPQIIVGIC AMTKKSKSKP MTQILERLCR FDYLTVIILG EDVILNEPVE ENSP00000400887/1-1433 PEPQIIVGIC AMTKKSKSKP MTQILERLCR FDYLTVVILG EDVILNEPVE ENSBTAP00000018635/1-1477 PEPQIIVGIC AMTKKSKSKP MTQILERLCR FDYLTVIILG EDVILNEPVE bmy_10928T0/1-1109 PEPQIIVGIC AMTKKSKSKP MTQILERLCR FDYLTVIILG EDVILNEPVE BACU016957/1-1484 PEPQIIVGIC AMTKKSKSKP MTQILERLCR FDYLTVIILG EDVILNEPVE 101 150 ENSTTRP00000005506/1-1428 NWPSCHCLIS FHSKGFPLDK AVAYSKLRNP FLINDLAMQY YIQDRREVYR ENSP00000400887/1-1433 NWPSCHCLIS FHSKGFPLDK AVAYSKLRNP FLINDLAMQY YIQDRREVYR ENSBTAP00000018635/1-1477 NWPSCHCLIS FHSKGFPLDK AVAYSKLRNP FLINDLAMQY YIQDRREVYR bmy_10928T0/1-1109 NWPSCHCLIS FHSKGFPLDK AVAYSKLRNP FLINDLAMQY YIQDRREVYR BACU016957/1-1484 NWPSCHCLIS FHSKGFPLDK AVAYSKLRNP FLINDLAMQY YIQDRREVYR 151 200 ENSTTRP00000005506/1-1428 ILQEEGIDLP RYAVLNRDPA RPEECNLIEG EDQVEVNGAV FPKPFVEKPV ENSP00000400887/1-1433 ILQEEGIDLP RYAVLNRDPA RPEECNLIEG EDQVEVNGAV FPKPFVEKPV ENSBTAP00000018635/1-1477 ILQEEGIDLP RYAVLNRDPA RPEECNLIEG EDQVEVNGAV FPKPFVEKPV bmy_10928T0/1-1109 ILQEEGIDLP RYAVLNRDPA RPEECNLIEG EDQVEVNGAV FPKPFVEKPV BACU016957/1-1484 ILQEEGIDLP RYAVLNRDPA RPEECNLIEG EDQVEVNGAV FPKPFVEKPV 201 250 ENSTTRP00000005506/1-1428 SAEDHNVYIY YPSSAGGGSQ RLFRKIGSRS SVYSPESSVR KTGSYIYEEF ENSP00000400887/1-1433 SAEDHNVYIY YPSSAGGGSQ RLFRKIGSRS SVYSPESSVR KTGSYIYEEF ENSBTAP00000018635/1-1477 SAEDHNVYIY YPSSAGGGSQ RLFRKIGSRS SVYSPESSVR KTGSYIYEEF bmy_10928T0/1-1109 SAEDHNVYIY YPSSAGGGSQ RLFRKIGSRS SVYSPESSVR KTGSYIYEEF BACU016957/1-1484 SAEDHNVYIY YPSSAGGGSQ RLFRKIGSRS SVYSPESSVR KTGSYIYEEF 251 300 ENSTTRP00000005506/1-1428 MPTDGTDVKV YTVGPDYAHA EARKSPALDG KVERDSEGKE IRYPVMLTAM ENSP00000400887/1-1433 MPTDGTDVKV YTVGPDYAHA EARKSPALDG KVERDSEGKE IRYPVMLTAM ENSBTAP00000018635/1-1477 MPTDGTDVKV YTVGPDYAHA EARKSPALDG KVERDSEGKE IRYPVMLTAM bmy_10928T0/1-1109 MPTDGTDVKV YTVGPDYAHA EARKSPALDG KVERDSEGKE IRYPVMLTAM BACU016957/1-1484 MPTDGTDVKV YTVGPDYAHA EARKSPALDG KVERDSEGKE IRYPVMLTAM 301 350 ENSTTRP00000005506/1-1428 EKLVARKVCV AFKQTVCGFD LLRANGHSFV CDVNGFSFVK NSMKYYDDCA ENSP00000400887/1-1433 EKLVARKVCV AFKQTVCGFD LLRANGHSFV CDVNGFSFVK NSMKYYDDCA ENSBTAP00000018635/1-1477 EKLVARKVCV AFKQTVCGFD LLRANGHSFV CDVNGFSFVK NSMKYYDDCA bmy_10928T0/1-1109 EKLVARKVCV AFKQTVCGFD LLRANGHSFV CDVNGFSFVK NSMKYYDDCA BACU016957/1-1484 EKLVARKVCV AFKQTVCGFD LLRANGHSFV CDVNGFSFVK NSMKYYDDCA 351 400 ENSTTRP00000005506/1-1428 KILGNTIMRE LAPQFQIPWS IPT-AEDIPI VPTTSGTMME LRCVIAIIRH ENSP00000400887/1-1433 KILGNTIMRE LAPQFQIPWS IPTEAEDIPI VPTTSGTMME LRCVIAIIRH ENSBTAP00000018635/1-1477 KILGNTIMRE LAPQFQIPWS IPMEAEDIPI VPTTSGTMME LRCVIAIIRH bmy_10928T0/1-1109 KILG------ ---------- ---------- --------ME LRCVIAIIRH BACU016957/1-1484 KILGNTIMRE LAPQFQIPWS IPTEAEDIPI VPTTSGTMME LRCVIAIIRH 401 450 ENSTTRP00000005506/1-1428 GDRTPKQKMK MEVTHPRFFS LFEKHGGYKT GKLKLKRPEQ LQEVLDITRL ENSP00000400887/1-1433 GDRTPKQKMK MEVKHPRFFA LFEKHGGYKT GKLKLKRPEQ LQEVLDITRL ENSBTAP00000018635/1-1477 GDRTPKQKMK MEVTHPRFFS LFEKHGGYKT GKLKLKRPEQ LQEVLDITRL bmy_10928T0/1-1109 GDRTPKQKMK MEVTHPRFFS LFEKHGGYKT GKLKLKRPEQ LQEVLDITRL BACU016957/1-1484 GDRTPKQKMK MEVTHPRFFS LFEKHGGYKT GKLKLKRPEQ LQEVLDITRL 451 500 ENSTTRP00000005506/1-1428 LLAELEKEPS GEIEEKTGKL EQLKSVLEMY GHFSGINRKV QLTYYPHGVK ENSP00000400887/1-1433 LLAELEKEPG GEIEEKTGKL EQLKSVLEMY GHFSGINRKV QLTYYPHGVK ENSBTAP00000018635/1-1477 LLAELEKEPG GEIEEKTGKL EQLKSVLEMY GHFSGINRKV QLTYYPHGVK bmy_10928T0/1-1109 LLAELEKEPG GEIEEKTGKL EQLKSVLEMY GHFSGINRKV QLTYYPHGVK BACU016957/1-1484 LLAELEKEPG GEIEEKTGKL EQLKSVLEMY GHFSGINRKV QLTYYPHGVK 501 550 ENSTTRP00000005506/1-1428 ASNEGQDPQG EALAPSLLLV LKWGGELTPA GRVQAEELGR AFRCMYPGGQ ENSP00000400887/1-1433 ASNEGQDPQR ETLAPSLLLV LKWGGELTPA GRVQAEELGR AFRCMYPGGQ ENSBTAP00000018635/1-1477 ASNEGQDTQR EALAPSLLLV LKWGGELTPA GRVQAEELGR AFRCMYPGGQ bmy_10928T0/1-1109 ASNEGQDPQG EALAPSLLLV LKWGGELTPA GRVQAEELGR AFRCMYPGGQ BACU016957/1-1484 ASNEGQDPQG EALAPSLLLV LKWGGELTPA GRVQAEELGR AFRCMYPGGQ 551 600 ENSTTRP00000005506/1-1428 GDYAGFPGCG LLRLHSTFRH DLKIYASDEG RVQMTAAAFA KGLLALEGEL ENSP00000400887/1-1433 GDYAGFPGCG LLRLHSTFRH DLKIYASDEG RVQMTAAAFA KGLLALEGEL ENSBTAP00000018635/1-1477 GDYAGFPGCG LLRLHSTFRH DLKIYASDEG RVQMTAAAFA KGLLALEGEL bmy_10928T0/1-1109 GDYAGFPGCG LLRLHSTFRH DLKIYASDEG RVQMTAAAFA KGLLALEGEL BACU016957/1-1484 GDYAGFPGCG LLRLHSTFRH DLKIYASDEG RVQMTAAAFA KGLLALEGEL 601 650 ENSTTRP00000005506/1-1428 TPILVQMVKS ANMNGLLDSD GDSLSSCQHR VKARLHHILQ QDSPFAPEDY ENSP00000400887/1-1433 TPILVQMVKS ANMNGLLDSD GDSLSSCQHR VKARLHHILQ QDAPFGPEDY ENSBTAP00000018635/1-1477 TPILVQMVKS ANMNGLLDSD GDSLSSCQHR VKARLHHILQ QDAPFGPEDY bmy_10928T0/1-1109 TPILVQMVKS ANMNGLLDSD GDSLSSCQHR VKARLHHILQ QDAPFGPEDY BACU016957/1-1484 TPILVQMVKS ANMNGLLDSD GDSLSSCQHR VKARLHHILQ QDAPFGPEDY 651 700 ENSTTRP00000005506/1-1428 DQLAPTGSTS LLNSMAIIQN PVKVCDQVFA LIENLTHQIQ KRMQDPKSVD ENSP00000400887/1-1433 DQLAPTRSTS LLNSMTIIQN PVKVCDQVFA LIENLTHQIR ERMQDPRSVD ENSBTAP00000018635/1-1477 NQLAPTGSTS LLSSMAVIQN PVKVCDQVFD LIENLTHQIR ERMQDPKSVD bmy_10928T0/1-1109 DQLAPTGSTS LLNSMAIIQN PVKVCDQVFA LIENLTHQIQ ERMQDPKSVD BACU016957/1-1484 DQLAPTGSTS LLNSMAIIQN PVKVCDQVFA LIENLTHQIQ ERMQDPKSVD 701 750 ENSTTRP00000005506/1-1428 LQLYHSETLE LMLQRWSKLE RDFRQKSGRY DISKIPDIYD CVKYDVQHNG ENSP00000400887/1-1433 LQLYHSETLE LMLQRWSKLE RDFRQKSGRY DISKIPDIYD CVKYDVQHNG ENSBTAP00000018635/1-1477 LQLYHSETLE LMLQRWSKLE RDFRQKSGRY DISKIPDIYD CVKYDVQHNG bmy_10928T0/1-1109 LQLYHSETLE LMLQRWSKLE RDFRQKSGRY DISKIPDIYD CVKYDVQHNG BACU016957/1-1484 LQLYHSETLE LMLQRWSKLE RDFRQKSGRY DISKIPDIYD CVKYDVQHNG 751 800 ENSTTRP00000005506/1-1428 SLGLQGTAEL LRLSKALADV VIPQEYGISR EEKLEIAVGF CLPLLRKILL ENSP00000400887/1-1433 SLGLQGTAEL LRLSKALADV VIPQEYGISR EEKLEIAVGF CLPLLRKILL ENSBTAP00000018635/1-1477 SLGLQGTAEL LRLSKALADV VIPQEYGISR EEKLEIAVGF CLPLLRKILL bmy_10928T0/1-1109 SLGLQGTAEL LRLSKALADV VIPQEYGISR EEKLEIAVGF CLALLRKILL BACU016957/1-1484 SLGLQGTAEL LRLSKALADV VIPQEYGISR EEKLEIAVGF CLALLRKILL 801 850 ENSTTRP00000005506/1-1428 DLQRTHEDES VNKLHPLXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000400887/1-1433 DLQRTHEDES VNKLHPLCYL RYSRGVLSPG RHVRTRLYFT SESHVHSLLS ENSBTAP00000018635/1-1477 DLQRTHEDES VNKLHPL--- -YSRGVLSPG RHVRTRLYFT SESHVHSLLS bmy_10928T0/1-1109 DLQRTHEDES VNKLHPL--- -YSRGVLSPG RHVRTRLYFT SESHVHSLLS BACU016957/1-1484 DLQRTHEDES VNKLHPL--- -YSRGVLSPG RHVRTRLYFT SESHVHSLLS 851 900 ENSTTRP00000005506/1-1428 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXDPLSE ENSP00000400887/1-1433 VFRYGGLLDE TQDAQWQRAL DYLSAISELN YMTQIVIMLY EDNTQDPLSE ENSBTAP00000018635/1-1477 VFRYGGLLDE TKDTQWQRAL AYLSAISELN YMTQIVIMLY EDNTRDPLSE bmy_10928T0/1-1109 VFRYGGLLDE TKDAQWQRAL AYLSAISELN YMTQIVIMLY EDNTRDPLSE BACU016957/1-1484 VFRYGGLLDE TKDAQWQRAL AYLSAISELN YMTQIVIMLY EDNTRDPLSE 901 950 ENSTTRP00000005506/1-1428 ERFHVELHFS PGVKGVEEEG SAPTGCGFRP ASSENEEMKT DQGSMEDLCP ENSP00000400887/1-1433 ERFHVELHFS PGVKGVEEEG SAPAGCGFRP ASSENEEMKT NQGSMENLCP ENSBTAP00000018635/1-1477 ERFHVELHFS PGVKGVEEEG SAPTGCGFRP ASSENEERKA DQGSVEDLCP bmy_10928T0/1-1109 ERFHVELHFS PGVKGVEEEG SAPTGCGFRP ASSENEEMKT DQGSMEDLCP BACU016957/1-1484 ERFHVELHFS PGVKGVEEEG SAPTGCGFRP ASSENEEMKT DQGSMEDLCP 951 1000 ENSTTRP00000005506/1-1428 GKASDEPDGA LQTSPQPSEG PGLPKRSPLI RNRKAGSMEV LSETSSSRPG ENSP00000400887/1-1433 GKASDEPDRA LQTSPQPPEG PGLPRRSPLI RNRKAGSMEV LSETSSSRPG ENSBTAP00000018635/1-1477 GKASDEPDRA LQTSPLPSEG PGLPKRSPLI RNRKAGSMEV LSETSSSRPG bmy_10928T0/1-1109 GKASDEPDRA LQTSPQPSEG PGLPKRSPLI RNRKAGSMEV LSETSSSRPG BACU016957/1-1484 GKASDEPDRA LQTSPQPSEG PGLPKRSPLI RNRKAGSMEV LSETSSSRPG 1001 1050 ENSTTRP00000005506/1-1428 GYRLFSSSRP PTEMKQSGLG SQCTGLFSTT VLGGSSSAPN LQDYARSQGK ENSP00000400887/1-1433 GYRLFSSSRP PTEMKQSGLG SQCTGLFSTT VLGGSSSAPN LQDYARSHGK ENSBTAP00000018635/1-1477 GHRLFSSSRP PTEMKQSGLG SQCTGLFSTT VLGGSSSAPN LQDYARSQGK bmy_10928T0/1-1109 GYRLFSSSRP PTEMKQSGLG SQCTGLFSTT VLGGSSSAPN LQDYARSQGK BACU016957/1-1484 GYRLFSSSRP PAEMKQSGLG SQCTGLFSTT VLGGSSSAPN LQDYARSQGK 1051 1100 ENSTTRP00000005506/1-1428 KLPPASLKHR DELLFVPAVK RFSVSFAKHP TN-------- ---------- ENSP00000400887/1-1433 KLPPASLKHR DELLFVPAVK RFSVSFAKHP TN-------- ---------- ENSBTAP00000018635/1-1477 KLPPASLKHR DELLFVPAVK RFSVSFAKHP TN-------- ---------- bmy_10928T0/1-1109 KLPPASLKHR DELLFVPAVK RFSVSFAKHP TN-------- ---------- BACU016957/1-1484 KLPPASLKHR DELLFVPAVK RFSVSFAKHP TNELLDDQHP VVRLLRSCSS 1101 1150 ENSTTRP00000005506/1-1428 ---------- ---------- ---------- ---------- ---GFEGCSM ENSP00000400887/1-1433 ---------- ---------- ---------- ---------- ---GFEGCSM ENSBTAP00000018635/1-1477 ---------- ---------- ---------- ---------- ---GFEGCSM bmy_10928T0/1-1109 ---------- ---------- ---------- ---------- ---GFEGCSM BACU016957/1-1484 DCTGGRPVSL DATLAHHLHQ CSYHLRLFRN WLRSGQDDPE CLYGFEGCSM 1151 1200 ENSTTRP00000005506/1-1428 VPTIYPLETL HNALSLRQVS EFLSRVCQRH TDAQAQASAA LFDSMHSNQT ENSP00000400887/1-1433 VPTIYPLETL HNALSLRQVS EFLSRVCQRH TDAQAQASAA LFDSMHSSQA ENSBTAP00000018635/1-1477 VPTIYPLETL HNALSLRQVS EFLSRVCQRH TEAQAQASAA LFDSMHSNQA bmy_10928T0/1-1109 VPTIYPLETL HNALSLRQVS EFLSRVCQRH TDAQAQASAG M--------- BACU016957/1-1484 VPTIYPLETL HNALSLRQVS EFLSRVCQRH TDAQAQASAA LFDSMHSNQT 1201 1250 ENSTTRP00000005506/1-1428 SDSPFSPPRT LHSPTLQLRQ RSEKPPWYSS GPSSTVSSAG PSSPTAVDGN ENSP00000400887/1-1433 SDNPFSPPRT LHSPPLQLQQ RSEKPPWYSS GPSSTVSSAG PSSPTTVDGN ENSBTAP00000018635/1-1477 SDSPFSPPRT LHSPTLQLQQ RSEKPPWYSS GPSSTVSSAG PSSPTAVDGN bmy_10928T0/1-1109 ---------- ---------- ---------- ---------- ---------- BACU016957/1-1484 SDSPFSPPRT LHSPTLQLRQ RSEKPPWYSS GPSSTVSSAG PSSPTAVDGN 1251 1300 ENSTTRP00000005506/1-1428 CHFGFSDHPS LNSHVTEEHQ GLGLLQETIG NGAQELPIEG EQEPFERNQS ENSP00000400887/1-1433 SQFGFSDQPS LNSHVAEEHQ GLGLLQETPG SGAQELSIEG EQELFEPNQS ENSBTAP00000018635/1-1477 CPFGFSDQPS VSSHVTEEYQ GLGLLQEAPG SGAQEPPLEG QQEPFEQNQS bmy_10928T0/1-1109 ---------- ---------- ---------- ---------- ---------- BACU016957/1-1484 CHFGFSDHPS LNSHVTEEHQ GLGLLQESIG NGAQELPIER EQEPFERNQS 1301 1350 ENSTTRP00000005506/1-1428 PQEPPVETSQ PCQKVAE--- ---EVSQPCQ NIPEEVSQPC QEVPDISQPC ENSP00000400887/1-1433 PQVPPMETSQ PYEEVSQPCQ EVPDISQPCQ DISEALSQPC QKVPDISQQC ENSBTAP00000018635/1-1477 PQEPPVETKK PCQEVAE--- ---EVSQPCQ DIPEEVNQPC QQVSDICQPC bmy_10928T0/1-1109 ---------- ---------- ---------- ---------- ---------- BACU016957/1-1484 PQEPPVETSQ PCQKVAE--- ---EVSQPCQ DIPEEVSQPC QEVPDISQPC 1351 1400 ENSTTRP00000005506/1-1428 QENHDDVNQT CQEVPQISQP CQNAGLLYQK VSEEACELCQ ENSEEVNQPR ENSP00000400887/1-1433 QENHDNGNHT CQEVPHISQP CQKSSQLCQK VSEEVCQLCL ENSEEVSQPC ENSBTAP00000018635/1-1477 EENHDDVDQT CQEVPQISQP CEDASQLYQK VSKEVCELCQ -NSEEVNQPC bmy_10928T0/1-1109 ---------- ---------- -ENTLILYHY -------LCP HSHAS----- BACU016957/1-1484 KEKHDDVNQT CQEVPQISQP CQNASQLYQK VSEEACELCQ ENSEEVNQPR 1401 1450 ENSTTRP00000005506/1-1428 QGAPVEVGRR VPGLPVGVGG LAQEILVEVG KPAQGIPEEL SQPCQEFSGD ENSP00000400887/1-1433 QGVSVEVGKL VHKFHVGVGS LVQETLVEVG SPAEEIPEEV IQPYQEFSVE ENSBTAP00000018635/1-1477 QGVPVEIGRL VHGFPVGVGG LAQEVLGEVG RPTQEIPEEL SQSCQEFSVD bmy_10928T0/1-1109 ---------- ---------- ---------- ---------- ---------- BACU016957/1-1484 QGVPVEVGRL VHGFPVGVGG LAQEILMEVG KPAQEIPEEL SQPCQEFSGD 1451 1500 ENSTTRP00000005506/1-1428 IGRLAQEASA IILLSQDIPE VDKPSQEFPG EGDLHVQEVP EEVNQQ---- ENSP00000400887/1-1433 VGRLAQETSA INLLSQGIPE IDKPSQEFPE EIDLQAQEVP EEIN------ ENSBTAP00000018635/1-1477 IGRLAQEASA INLLSPDTPE VDNPPLEFPG EGALQAQEVS EWVKQQQSYV bmy_10928T0/1-1109 ---------- ---------- ---------- ---------- ---------- BACU016957/1-1484 IGRLAQEASA IILLSQDIPE VDKPSQEFPG EGDLYVQEVP EEVN------ 1501 1550 ENSTTRP00000005506/1-1428 ---------- ---------- ---------- ---------- --------- ENSP00000400887/1-1433 ---------- ---------- ---------- ---------- --------- ENSBTAP00000018635/1-1477 VPELIDQLSR EEVPQVQCPP SNANPQSQSL APDQNAPLPP ATCDSSFSH bmy_10928T0/1-1109 ---------- ---------- ---------- ---------- --------- BACU016957/1-1484 ---------- ---------- ---------- ---------- ---------