KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:19 2014 Check: 00 .. Name: ENSP00000350310/1-1205 Len: 1616 Check: 4269 Weight: 1.00 Name: ENSTTRP00000015619/1-1208 Len: 1616 Check: 4690 Weight: 1.00 Name: BACU001092/1-1577 Len: 1616 Check: 8284 Weight: 1.00 Name: bmy_11875T0/1-1221 Len: 1616 Check: 268 Weight: 1.00 Name: ENSBTAP00000018688/1-1028 Len: 1616 Check: 3274 Weight: 1.00 // 1 50 ENSP00000350310/1-1205 MTNPSDRVLP ANSMAESREG DFGCTVMELR KLMELRSRDA LTQINVHYGG ENSTTRP00000015619/1-1208 ---------- ---------- ---CTVMDLR KLMELRSADA INQINVHYGG BACU001092/1-1577 MTNPTEHALP GNSIIESHEG EFGCTVMDLR KLMELRSTDA INQINVHYGG bmy_11875T0/1-1221 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018688/1-1028 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000350310/1-1205 VQNLCSRLKT SPVEGLSGNP ADLEKRRQVF GHNVIPPKKP KTFLELVWEA ENSTTRP00000015619/1-1208 VMNLCSRLKT NPVEGLSGNP ADLEKRKQLF GQNLIPPKKP KTFLELVWEA BACU001092/1-1577 VMNLCSRLKT NPVEGLSGNP ADLEKRKQVF GQNLIPPKKP KTFLELVWEA bmy_11875T0/1-1221 ---------- MSFSGLSGNP ADLEKRKQVF GQNLIPPKKP KTFLELVWEA ENSBTAP00000018688/1-1028 ---------- ----GLSGNP ADLEKRKQVF GQNLIPPKKP KTFLELVWEA 101 150 ENSP00000350310/1-1205 LQDVTLIILE IAAIISLVLS FYRPAGEENE LC-GQVATTP EDENEAQAGW ENSTTRP00000015619/1-1208 LQDVTLIILE IAAIISLVLS FYRPPGEENE QC-GLAVTSP EDEGEAEAGW BACU001092/1-1577 LQDVTLIILE IAAIISLVLS FYRPPGEENE QC-GLAVTSP EDEGEAEAGW bmy_11875T0/1-1221 LQDVTLIILE IAAIISLVLS FYRPPGEENE QC-GLAVTSP EDEGEAEAGW ENSBTAP00000018688/1-1028 LQDVTLIILE IAAIISLVLS FYRPPGGENE RDVGLAVTSP EDEGEAEAGW 151 200 ENSP00000350310/1-1205 IEGAAILFSV IIVVLVTAFN DWSKEKQFRG LQCRIEQEQK FSIIRNGQLI ENSTTRP00000015619/1-1208 IEGAAILFSV IIVVLVTAFN DWSKEKQFRG LQNRIEKEQK FSVIRNGHII BACU001092/1-1577 IEGAAILFSV IIVVLVTAFN DWSKEKQFRG LQNRIEKEQK FSVIRNGHII bmy_11875T0/1-1221 IEGAAILFSV IIVVLVTAFN DWSKEKQFRG LQNRIEKEQK FSVIRNGHII ENSBTAP00000018688/1-1028 IEGAAILFSV IIVVLVTAFN DWSKEKQFRG LQNRIEKEQK FSVIRNGHII 201 250 ENSP00000350310/1-1205 QLPVAEIVVG DIAQVKYGDL LPADGILIQG NDLKIDESSL TGESDHVKKS ENSTTRP00000015619/1-1208 QLPVAEIVVG DIAQIKYGDL LPADGILIQG NDLKIDESSL TGESDHVKKS BACU001092/1-1577 QLPVAEIVVG DIAQIKYGDL LPADGILIQG NDLKIDESSL TGESDHVKKS bmy_11875T0/1-1221 QLPVAEIVVG DIAQIKYGDL LPADGILIQG NDLKIDESSL TGESDHVKKS ENSBTAP00000018688/1-1028 QLPVAEIVVG DIAQIKYGDL LPADGILIQG NDLKIDESSL TGESDHVKKS 251 300 ENSP00000350310/1-1205 LDKDPMLLSG THVMEGSGRM VVTAVGVNSQ TGIILTLLGV NEDDEGEKKK ENSTTRP00000015619/1-1208 LERDPMLLSG THVMEGSGRM VVTAVGINSQ TGIIFTLLGA SEGEEEEKKK BACU001092/1-1577 LERDPMLLSG THVMEGSGRM VVTAVGINSQ TGIIFTLLGA SEGEEEEKKK bmy_11875T0/1-1221 LERDPMLLSG THVMEGSGRM VVTAVGINSQ TGIIFTLLGA SEGEEEEKKK ENSBTAP00000018688/1-1028 LERDPMLLSG THVMEGSGRM VVTAVGINSQ TGIIFTLLGA SEGEEEEKKK 301 350 ENSP00000350310/1-1205 KGKKQGVPEN RNKAKTQDGV ALEIQPLNSQ EGIDNEEKDK KAVKVPKKEK ENSTTRP00000015619/1-1208 ---------- --KAKTQDGV ALEIQPLNSQ EGIDNEEKEK KAAKLPKKEK BACU001092/1-1577 KGKKQGVPEN RNKAKTQDGV ALEIQPLNSQ EGIDNEEKEK KAAKLPKKEK bmy_11875T0/1-1221 KGKKQGVPEN RNKAKTQDGV ALEIQPLNSQ EGIDNEEKEK KAAKLPKKEK ENSBTAP00000018688/1-1028 ---------- --KAKTQDGV ALEIQPLNSQ EGIDSEEKEK KAAKLPKKEK 351 400 ENSP00000350310/1-1205 SVLQGKLTRL AVQIGKAGLL MSALTVFILI LYFVIDNFVI NRRPWLPECT ENSTTRP00000015619/1-1208 SVLQGKLTRL AVQIGKAGLI MSAITVLILI LYFVIDNFVI QRKPWLAECT BACU001092/1-1577 SVLQGKLTRL AVQIGKAGLI MSAITVLILI LYFVIDNFVI QRRPWLAECT bmy_11875T0/1-1221 SVLQGKLTRL AVQIGKAGLI MSAITVLILI LYFVIDNFVI QRRPWLAECT ENSBTAP00000018688/1-1028 SVLQGKLTRL AVQIGKAGLI MSAITVLILI LYFVIDNFVI QRRPWLAECT 401 450 ENSP00000350310/1-1205 PIYIQYFVKF FIIGITVLVV AVPEGLPLAV TISLAYSVKK MMKDNNLVRH ENSTTRP00000015619/1-1208 PIYVQYFVKF FIIGITVLVV AVPEGLPLAV TISLAYSVKK MMKDNNLVRH BACU001092/1-1577 PIYVQYFVKF FIIGITVLVV AVPEGLPLAV TISLAYSVKK MMKDNNLVRH bmy_11875T0/1-1221 PIYVQYFVKF FIIGITVLVV AVPEGLPLAV TISLAYSVKK MMKDNNLVRH ENSBTAP00000018688/1-1028 PIYVQYFVKF FIIGVTVLVV AVPEGLPLAV TISLAYSVKK MMKDNNLVRH 451 500 ENSP00000350310/1-1205 LDACETMGNA TAICSDKTGT LTMNRMTVVQ AYIGGIHYRQ IPSPDVFLPK ENSTTRP00000015619/1-1208 LDACETMGNA TAICSDKTGT LTMNRMTVVQ AYIGETRYHQ IPSPDVLVPK BACU001092/1-1577 LDACETMGNA TAICSDKTGT LTMNRMTVVQ AYIGETHYHQ IPSPDVLVPK bmy_11875T0/1-1221 LDACETMGNA TAICSDKTGT LTMNRMTVVQ AYIGETHYHQ IPSPDVLVPK ENSBTAP00000018688/1-1028 LDACETMGNA TAICSDKTGT LTMNRMSVVQ AYIGDTRYHQ IPSPDDLVPK 501 550 ENSP00000350310/1-1205 VLDLIVNGIS INSAYTSKIL PPEKEGGLPR QVGNKTECAL LGFVTDLKQD ENSTTRP00000015619/1-1208 VLDLLVNGIS INSAYTSKVL PPEKEGGLPR QVGNKTECAL LGFVTDLKQD BACU001092/1-1577 VLDLIVNGIS INSAYTSKVL PPEKEGGLPR QVGNKTECAL LGFVTDLKQD bmy_11875T0/1-1221 VLDLIVNGIS INSAYTSKVL PPEKEGGLPR QVGNKTECAL LGFVTDLKQD ENSBTAP00000018688/1-1028 VLDLIVNGIS INSAYTSKIL PPEKEGGLPR QVGNKTECAL LGFVSDLKQD 551 600 ENSP00000350310/1-1205 YQAVRNEVPE EKLYKVYTFN SVRKSMSTVI RNPNGGFRMY SKGASEIILR ENSTTRP00000015619/1-1208 YHAVRSEVPE EKLYKVYTFN SVRKSMSTVI EKPRSGYRMY SKGASEIILR BACU001092/1-1577 YHAVRSEVPE EKLYKVYTFN SVRKSMSTVI EKPRSGYRMY SKGASEIILR bmy_11875T0/1-1221 YHAVRSEVPE EKLYKVYTFN SVRKSMSTVI EKPRSGYRMY SKGASEIILR ENSBTAP00000018688/1-1028 YHAVRSEVPE EKLYKVYTFN SVRKSMSTVI EKPGGGYRMY SKGASEIILR 601 650 ENSP00000350310/1-1205 KCNRILDRKG EAVPFKNKDR DDMVRTVIEP MACDGLRTIC IAYRDFDDTE ENSTTRP00000015619/1-1208 KCNRILDKKG EAVPFKNKDR DEMVRTVIEP MASEGLRTIC IAYRDFNDGE BACU001092/1-1577 KCNRILDKKG EAVPFKNKDR DEMVHTVIEP MASEGLRTIC IAYRDFNDGE bmy_11875T0/1-1221 KCNRILDKKG EAVPFKNKDR DEMVHTVIEP MASEGLRTIC IAYRDFNDGE ENSBTAP00000018688/1-1028 KCNRILDKKG EAVPFKNKDR DEMVRTVIEP MACEGLRTLC IAYRDFNDGE 651 700 ENSP00000350310/1-1205 PSWDNENEIL TELTCIAVVG IEDPVRPEVP DAIAKCKQAG ITVRMVTGDN ENSTTRP00000015619/1-1208 PPWDNESEIL TELTCIAVVG IEDPVRPEVP EAXXXXXXXX XXXXXXXXXX BACU001092/1-1577 PPWDNESEIL TELTCIAVVG IEDPVRPEVP EAIAKCKRAG ITVRMVTGDN bmy_11875T0/1-1221 PPWDNESEIL TELTCIAVVG IEDPVRPEVP EAIAKCKRAG ITVRMVTGDN ENSBTAP00000018688/1-1028 PPWDNESEIL TELTCIAVVG IEDPVRPEVP EAIAKCKRAG ITVRMVTGDN 701 750 ENSP00000350310/1-1205 INTARAIATK CGILTPGDDF LCLEGKEFNR LIRNEKGEVE QEKLDKIWPK ENSTTRP00000015619/1-1208 XXXXXXXXXX XXXXXXXXXX XXXXXKEFNR LIRNEKGEVE QEKLDKIWPK BACU001092/1-1577 INTARAIATK CGIVTPGDDF LCLEGKEFNR LIRNEKGEVE QEKLDKIWPK bmy_11875T0/1-1221 INTARAIATK CGIVTPGDDF LCLEGKEFNR LIRNEKGEVE QEKLDKIWPK ENSBTAP00000018688/1-1028 INTARAIATK CGIVTPGDDF LCLEGKEFNR LIRNEKGEVE QEKLDKIWPK 751 800 ENSP00000350310/1-1205 LRVLARSSPT DKHTLVKGII DSTVGEHRQV VAVTGDGTND GPALKKADVG ENSTTRP00000015619/1-1208 LRVLARSSPT DKHTLVKGII DSTVGEQRQV VAVTGDGTND GPALKKADVG BACU001092/1-1577 LRVLARSSPT DKHTLVKGII DSTVGEQRQV VAVTGDGTND GPALKKADVG bmy_11875T0/1-1221 LRVLARSSPT DKHTLVKGII DSTVGEQRQV VAVTGDGTND GPALKKADVG ENSBTAP00000018688/1-1028 LRVLARSSPT DKHTLVKGII DSTVGDQRQV VAVTGDGTND GPALKKADVG 801 850 ENSP00000350310/1-1205 FAMGIAGTDV AKEASDIILT DDNFTSIVKA VMWGRNVYDS ISKFLQFQLT ENSTTRP00000015619/1-1208 FAMGIAGTDV AKEASDIILT DDNFTSIVKA VMWGRNVYDS ISKFLQFQLT BACU001092/1-1577 FAMGIAGTDV AKEASDIILT DDNFTSIVKA VMWGRNVYDS ISKFLQFQLT bmy_11875T0/1-1221 FAMGIAGTDV AKEASDIILT DDNFTSIVKA VMWGRNVYDS ISKFLQFQLT ENSBTAP00000018688/1-1028 FAMGIAGTDV AKEASDIILT DDNFTSIVKA VMWGRNVYDS ISKFLQFQLT 851 900 ENSP00000350310/1-1205 VNVVAVIVAF TGACITQDSP LKAVQMLWVN LIMDTFASLA LATEPPTESL ENSTTRP00000015619/1-1208 VNVVAVIVAF TGACITQDSP LKAVQMLWVN LIMDTFASLA LATEPPTDSL BACU001092/1-1577 VNVVAVIVAF TGACITQDSP LKAVQMLWVN LIMDTFASLA LATEPPTDSL bmy_11875T0/1-1221 VNVVAVIVAF TGACITQDSP LKAVQMLWVN LIMDTFASLA LATEPPTDSL ENSBTAP00000018688/1-1028 VNVVAVIVAF TGACITQDSP LKAVQMLWVN LIMDTFASLA LATEPPTDSL 901 950 ENSP00000350310/1-1205 LKRRPYGRNK PLISRTMMKN ILGHAFYQLI VIFILVFAGE KFFDIDSGRK ENSTTRP00000015619/1-1208 LKRRPYGRNK PLISRTMMKN ILGHAVYQLT VIFFLVFAGE KFFDIDSGRR BACU001092/1-1577 LKRRPYGRNK PLISRTMMKN ILGHAVYQLT VIFFLVFAGE KFFDIDSGRR bmy_11875T0/1-1221 LKRRPYGRNK PLISRTMMKN ILGHAVYQLT VIFFLVFAGE KFFDIDSGRR ENSBTAP00000018688/1-1028 LKRRPYGRNK PLISRTMMKN ILGHAVYQLT VIFFLVFAGE KFFDIDSGRR 951 1000 ENSP00000350310/1-1205 APLHSPPSQH YTIVFNTFVL MQLFNEINSR KIHGEKNVFS GIYRNIIFCS ENSTTRP00000015619/1-1208 APLHSPPSQH YTIIFNTFVL MQLFNEINSR KIHGERNVFS GIFRNLIFCS BACU001092/1-1577 APLHSPPSQH YTIIFNTFVL MQLFNEINSR KIHGERNVFS GIFRNLIFCS bmy_11875T0/1-1221 APLHSPPSQH YTIIFNTFVL MQLFNEINSR KIHGERNVFS GIFRNLIFCS ENSBTAP00000018688/1-1028 APLHSPPSQH YTIIFNTFVL MQLFNEINSR KIHGERNVFS GIFRNLIFCS 1001 1050 ENSP00000350310/1-1205 VVLGTFICQI FIVEFGGKPF SCTSLSLSQW LWCLFIGIGE LLWGQFISAI ENSTTRP00000015619/1-1208 VVLGTFVSQI IIVEFGGKPF SCTNLTLSQW FWCLFIGFGE LLWGQVISTI BACU001092/1-1577 VVLGTFVSQI IIVEFGGKPF SCTNLTLSQW FWCLFIGIGE LLWGQVISTI bmy_11875T0/1-1221 VVLGTFISQI IIVEFGGKPF SCTNLTLSQW FWCLFIGIGE LLWGQVISTI ENSBTAP00000018688/1-1028 VVLGTFISQI IIVEFGGKPF SCTKLTLSQW FWCLFIGIGE LLWGQVISTI 1051 1100 ENSP00000350310/1-1205 PTRSLKFLKE AGHGTTKEEI TKDAEGLDEI DHAEMELRRG QILWFRGLNR ENSTTRP00000015619/1-1208 PTQSLKFLKE AGHGTTKEEI TKDAEGLDEI DHAEMELRRG QILWFRGLNR BACU001092/1-1577 PTQSLKFLKE AGHGTTKEEI TKDAEGLDEI DHAEMELRRG QILWFRGLNR bmy_11875T0/1-1221 PTQSLKFLKE AGHGTTKEEI TKDAEGLDEI DHAEMELRRG QILWFRGLNR ENSBTAP00000018688/1-1028 PTQSLKFLKE AGHGTTKEEI TKDAEGLDEI DHAEMELRRG QILWFRGLNR 1101 1150 ENSP00000350310/1-1205 IQTQ------ ---------- ---------- ---------- ---------- ENSTTRP00000015619/1-1208 IQTQIDVINT FQTGASFKGV LKRQTMGQHL DVKHVPSSSY ---------- BACU001092/1-1577 IQTQIDVINT FQTGASFKGV LKRQTMGQHL DVKHVPSSSY ---------- bmy_11875T0/1-1221 IQTQIDVINT FQTGASFKGV LKRQTMGQHL DVKHVPSSSY VTVAPVKSPP ENSBTAP00000018688/1-1028 IQTQ------ ---------- ---------- ---------- ---------- 1151 1200 ENSP00000350310/1-1205 ---------- ---------- --------IK VVKAFHSSLH ESIQKPYNQK ENSTTRP00000015619/1-1208 ---------- ---------- --------IK VVKAFHSSLH ESIQKPKNQN BACU001092/1-1577 ---------- ---------- --------IK VVKAFHSSLH ESIQKPKNQN bmy_11875T0/1-1221 TTSVAAAVSS PTLGRKKSRA KIPLQNRAIK VVKAFHSSLH ESIQKPKNQN ENSBTAP00000018688/1-1028 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000350310/1-1205 SIHSFMTHPE FAIEEELPRT PLLDEEEEEN PDKASKFGTR VLLLDGEV-- ENSTTRP00000015619/1-1208 SIHNFMTHPE FAIDEEGPRT PLLDEQEEET FEKVSKPGTR MLPSDGEV-- BACU001092/1-1577 SIHNFMTHPE FAIDEEGPRT PLLDEQEEEN FEKVSKPGTR MLPLDGSIFS bmy_11875T0/1-1221 SIHNFMTHPE FAIDEEGPRT PLLDEQEEEN FEKVSKPGTR MLPLDGEV-- ENSBTAP00000018688/1-1028 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000350310/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015619/1-1208 ---------- ---------- ---------- ---------- ---------- BACU001092/1-1577 NFPPSYGWVM ALGFPRRAKD HYSSIFSGLA GLLAILLVVA VFCILWNWSK bmy_11875T0/1-1221 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018688/1-1028 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000350310/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015619/1-1208 ---------- ---------- ---------- ---------- ---------- BACU001092/1-1577 WKKRQVPYFQ VTVMPLLTLP RPRQGTKNIY DLLPRRQEEL GRHPSRSIRI bmy_11875T0/1-1221 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018688/1-1028 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000350310/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015619/1-1208 ---------- ---------- ---------- ---------- ---------- BACU001092/1-1577 FSTESLLSRN SDSPPSEHVP SQAGDVLHVH RAHTHAMGYA VGIYDNAMGP bmy_11875T0/1-1221 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018688/1-1028 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000350310/1-1205 ------TPYA NTNN------ ---------- ---------- ---------- ENSTTRP00000015619/1-1208 ------TPQA NKNN------ ---------- ---------- ---------- BACU001092/1-1577 QMCGNLTPSA HYVNVRASRD CPSTSSEDSR DYVNIPTAKE IAETLASTNS bmy_11875T0/1-1221 ------TPQA NKNN------ ---------- ---------- ---------- ENSBTAP00000018688/1-1028 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000350310/1-1205 ---------- ---------- -----NAVDC NQVQLP--QS DSSLQSLETS ENSTTRP00000015619/1-1208 ---------- ---------- -----NAVDC CQVQIVACHS DSPLHSLETS BACU001092/1-1577 PPGNLFILPS TKVLELTEEI DEGCGNASDC TSLGSPGTES SDPLNDGEGS bmy_11875T0/1-1221 ---------- ---------- -----NAVDC CQVQIVACHS DSPLHSLETS ENSBTAP00000018688/1-1028 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSP00000350310/1-1205 V--------- ---------- ---------- ---------- ---------- ENSTTRP00000015619/1-1208 V--------- ---------- ---------- ---------- ---------- BACU001092/1-1577 SQTSNDYVNM AVLDLETIQG KQPWGTFQCC RDYENVPPDP SGNQQQEEKE bmy_11875T0/1-1221 V--------- ---------- ---------- ---------- ---------- ENSBTAP00000018688/1-1028 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSP00000350310/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015619/1-1208 ---------- ---------- ---------- ---------- ---------- BACU001092/1-1577 ATSSNTDRVE GRTDGPETHI QPVVQSGSFL ALKDYVTYQS SAQSENSQMK bmy_11875T0/1-1221 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018688/1-1028 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSP00000350310/1-1205 ---------- ------ ENSTTRP00000015619/1-1208 ---------- ------ BACU001092/1-1577 HGEEMSNEDS HDYKNV bmy_11875T0/1-1221 ---------- ------ ENSBTAP00000018688/1-1028 ---------- ------