KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:21 2014 Check: 00 .. Name: ENSTTRP00000004757/1-945 Len: 946 Check: 2963 Weight: 1.00 Name: ENSP00000351190/1-946 Len: 946 Check: 9344 Weight: 1.00 Name: ENSBTAP00000018701/1-946 Len: 946 Check: 97 Weight: 1.00 Name: bmy_00656T0/1-899 Len: 946 Check: 4423 Weight: 1.00 Name: BACU001765/1-946 Len: 946 Check: 9045 Weight: 1.00 // 1 50 ENSTTRP00000004757/1-945 MKGLVCFLVC FLLSESQGFE IPTNGLSEFA EYGDLVELAP GKFQFVPENR ENSP00000351190/1-946 MKRLTCFFIC FFLSEVSGFE IPINGLSEFV DYEDLVELAP GKFQLVAENR ENSBTAP00000018701/1-946 MKGLTCFFLC FFLSESRGFE IPTNGLSEFA DYGDHVELAP GKFQFVPENR bmy_00656T0/1-899 MKGLMRFLVC FLLSESQGFE IPTNGLSEFA EYGDLVELAP GKFQFVPEIR BACU001765/1-946 MKGLMCFLVC FLLSESQGFE IPTNGLSEFA EYGDLVELAP GKFQFVPENR 51 100 ENSTTRP00000004757/1-945 RYQRSVSGES GEMMXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000351190/1-946 RYQRSLPGES EEMMEEVDQV TLYSYKVQST ITSRMATTMI QSKVVNNSPQ ENSBTAP00000018701/1-946 RYQRSISGES GERTEDVDQV TVYSYKVQST ITSRVANTVI QTKVVNHSPQ bmy_00656T0/1-899 RYQRSVSGES GEIMEDVDQV TLYSYKVRST ITSRMANTVI QTKVVNHSPQ BACU001765/1-946 RYQRSVSGES GEIMEDVDQV TLYSYKVRST ITSRMANTVI QTKVVNHSPQ 101 150 ENSTTRP00000004757/1-945 XXXVVFDVQI PKGASSPNF- MTXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000351190/1-946 PQNVVFDVQI PKGAFISNFS MTVDGKTFRS SIKEKTVGRA LYAQARAKGK ENSBTAP00000018701/1-946 PQNVVFDVQI PKGAFISNFS MTVDGTTFTS SIKEKTVGRA LYAQARAKGK bmy_00656T0/1-899 PQNVV----- ---------- -TVDGTTFTS SVKEKTVGRA LYSQARAKGK BACU001765/1-946 PQNVVFDVQI PKGAFISNFS MTVDGTTFTS SVKEKTVGRA LYSQARAKGK 151 200 ENSTTRP00000004757/1-945 XXXXXXSRAL DMENFKTEVN IAPGAKVQFE LHYQEVKWRK LGSYEHRLHL ENSP00000351190/1-946 TAGLVRSSAL DMENFRTEVN VLPGAKVQFE LHYQEVKWRK LGSYEHRIYL ENSBTAP00000018701/1-946 TAGLVRSRAL DMEDFKTEVS IAPGAKVQFE LHYQEVKWRK LGSYEHRLHL bmy_00656T0/1-899 MAGLVRSRAL DMENFKTEVN IAPGAKVQFE LHYQEVKWRK LGSYEHRLHL BACU001765/1-946 MAGLVRSRAL DMENFKTEVN IAPGAKVQFE LHYQEVKWRK LGSYEHRLHL 201 250 ENSTTRP00000004757/1-945 QPGRLAKHLE VDVWIIEPQG MRFLHVLDTF DGHFDGVPVV SKEHQKAHVT ENSP00000351190/1-946 QPGRLAKHLE VDVWVIEPQG LRFLHVPDTF EGHFDGVPVI SKGQQKAHVS ENSBTAP00000018701/1-946 KPGRLAKHLE VDVRIIEPQG LRSLHVLDTF DGHFDGVPVV SKGPQKAHIA bmy_00656T0/1-899 QPGRLAKHLE ---------G MRFLHVLDTF DGHFDGVPVV SKGHXKAHVT BACU001765/1-946 QPGRLAKHLE VDVWIIEPQG MRFLHVLDTF DGHFDGVPVV SKGHQKAHVT 251 300 ENSTTRP00000004757/1-945 FKPTVAQQRK CSNCSETAVA GELVVMYDVN REEKVGELQV FNGYFVHFFA ENSP00000351190/1-946 FKPTVAQQRI CPNCRETAVD GELVVLYDVK REEKAGELEV FNGYFVHFFA ENSBTAP00000018701/1-946 FKPTVAQQRK CLNCSETMVD GELVVMYDVN REEKVGELEV FNGYFVHFFA bmy_00656T0/1-899 FKPTVAQQRK CSSCPETAVD GELVVMYDVN REEKVGELQV FNGYFVHFFA BACU001765/1-946 FKPTVAQQRK CSNCSETAVD GELVVMYDVN REEKVGELQV FNGYFVHFFA 301 350 ENSTTRP00000004757/1-945 PENMDPIPKN ILFVIDVSGS MWGIKMKQTV EAMKTILDDL RAEDHFSMVD ENSP00000351190/1-946 PDNLDPIPKN ILFVIDVSGS MWGVKMKQTV EAMKTILDDL RAEDHFSVID ENSBTAP00000018701/1-946 PENMDPIPKN ILFVIDVSGS MWGIKMKQTV EAMKTILDDL RTEDHFSVVD bmy_00656T0/1-899 PENMDPIPKN ILFVIDVSGS MWGIKMKQTV EAMKTILDDL RTEDHFSMVD BACU001765/1-946 PENMDPIPKN ILFVIDVSGS MWGIKMKQTV EAMKTILDDL RAEDHFSMVD 351 400 ENSTTRP00000004757/1-945 FNHNVRTWRN DLVSATKTQI ADAKNYIHKI QPSGGTNINE ALLRAIFILN ENSP00000351190/1-946 FNQNIRTWRN DLISATKTQV ADAKRYIEKI QPSGGTNINE ALLRAIFILN ENSBTAP00000018701/1-946 FNHNVRTWRN DLVSATKTQV ADAKNYIEKI QPSGGTNINE ALLRAIFILN bmy_00656T0/1-899 FNHNVRTWRN DLVPATKTQI ADAKNYIHKI QPSGGTNINE ALLRAIFILN BACU001765/1-946 FNHNVRTWRN DLVPATKTQI ADAKNYIHKI QPSGGTNINE ALLRAIFILN 401 450 ENSTTRP00000004757/1-945 EANNLGLLDP NAVSLIILVS DGDPTVGELK LSKIQKNVKQ NIRENISLFS ENSP00000351190/1-946 EANNLGLLDP NSVSLIILVS DGDPTVGELK LSKIQKNVKE NIQDNISLFS ENSBTAP00000018701/1-946 EANNLGMLDP NSVSLIILVS DGDPTVGELK LSKIQKNVKQ NIRDNISLFS bmy_00656T0/1-899 EANNLGLLDP NAVSLIILVS DGDPT----- -----KNVKQ NIRENISLFS BACU001765/1-946 QANNLGLLDP NAVSLIILVS DGDPTVGELK LSKIQKNVKQ NIRENISLFS 451 500 ENSTTRP00000004757/1-945 LGIGFDVDYD FLKRLSNENR GIAQRIYGNQ DTSAQLKKFY NQVSTPLLRN ENSP00000351190/1-946 LGMGFDVDYD FLKRLSNENH GIAQRIYGNQ DTSSQLKKFY NQVSTPLLRN ENSBTAP00000018701/1-946 LGIGFDVDYD FLKRLSNDNR GIAQRIYGNQ DTSVQLKKFY NQVSTPLLRN bmy_00656T0/1-899 LGIGFDVDYD FLKRLSNENH GIAQRIYGNQ DTSAQLKKFY NQVSTPLLRN BACU001765/1-946 LGIGFDVDYD FLKRLSNENR GIAQRIYGNQ DTSAQLKKFY NQVSTPLLRN 501 550 ENSTTRP00000004757/1-945 VQFNYPQTPV TDVTQNSFHN YFGGSEIVVA GKVDPDKLEQ LQGIITATSA ENSP00000351190/1-946 VQFNYPHTSV TDVTQNNFHN YFGGSEIVVA GKFDPAKLDQ IESVITATSA ENSBTAP00000018701/1-946 VQFNYPQPSV TDVTQNSFHN YFGGSEIVVA GKVDPEKLGQ LQSIITATSA bmy_00656T0/1-899 VQFSYPQTPV TDVTQNSFHN YFGGSEIVVA GKVDPDKLEQ LQSIITATSA BACU001765/1-946 VQFNYPQTPV TDVTQNSFHN YFGGSEIVVA GKVDPDKLEQ LQSIITATSA 551 600 ENSTTRP00000004757/1-945 NAELVLETLA EVDGLEDFLS KDKHADPDFT KKLWAYLTIN QLLAERSLAP ENSP00000351190/1-946 NTQLVLETLA QMDDLQDFLS KDKHADPDFT RKLWAYLTIN QLLAERSLAP ENSBTAP00000018701/1-946 NAELVLETLA EMDGLEDFLS KDKHADPDFT KKLWAYLTIN QLLAERSLAP bmy_00656T0/1-899 NAELVLETLA EMDGLEDFLS KDKHADPDFT KKLWAYLTIN QLLAERSLAP BACU001765/1-946 NAELVLETLA EMDGLEDFLS KDKHADPDFT KKLWAYLTIN QLLAERSLAP 601 650 ENSTTRP00000004757/1-945 TAAVKRKITK TILQMSLDHH IVTPLTSLVI ENDAGDERML ADSPPQDHSC ENSP00000351190/1-946 TAAAKRRITR SILQMSLDHH IVTPLTSLVI ENEAGDERML ADAPPQDPSC ENSBTAP00000018701/1-946 TAATKRKITK TILQMSLDHH IVTPLTAMVI ENEAGDERML ADSPPQDHSC bmy_00656T0/1-899 TAAVKRKITK TILQMSLDHH IVTPLTSMVI ENDAGDERML ADSPPQDHSC BACU001765/1-946 TAAVKRKITK TILQMSLDHH IVTPLTSMVI ENDAGDERML ADSPPQDHSC 651 700 ENSTTRP00000004757/1-945 CSGALYYGNR VAPNSFPPWV NPSPTPMVPM PAVGAPVLET TPPPHVMRVE ENSP00000351190/1-946 CSGALYYGSK VVPDSTPSWA NPSPTPVISM LAQGSQVLES TPPPHVMRVE ENSBTAP00000018701/1-946 CSGALYHGSK VSPNSVPSWV NPSPAPVLPM PAVGAQVLES TPPPHVMRVE bmy_00656T0/1-899 CSGALYYGNR VAPNSFPPWV NPSPTQMVPM PAVGAPVLET TPPPHVMRVE BACU001765/1-946 CSGTLYYGNR VAPNSFPPWV NPSPTQMVPM PAVGAPVLET TPPPHVMRVE 701 750 ENSTTRP00000004757/1-945 NDPHFIIYLP KSQKNICFNI DSEPGKILNL VSDPELGILV NGQLIGAKKP ENSP00000351190/1-946 NDPHFIIYLP KSQKNICFNI DSEPGKILNL VSDPESGIVV NGQLVGAKKP ENSBTAP00000018701/1-946 NDPHFIIYLP KSQKNICFNI DSEPGKILNL VSDPELGILV NGQLVGAKKP bmy_00656T0/1-899 NDPHFIIYLP KSQKNICFNI DSEPGKILNL VSDPELGILV NGQLIGAKKP BACU001765/1-946 NDPHFIIYLP KSQKNICFNI DSEPGKILNL VSDPELGILV NGQLMGAKKP 751 800 ENSTTRP00000004757/1-945 KNEKLSTYFG KLGFYFQRED MKIEISTETI SLSGGSRTSV LSWSDTAHIL ENSP00000351190/1-946 NNGKLSTYFG KLGFYFQSED IKIEISTETI TLSHGSSTFS LSWSDTAQVT ENSBTAP00000018701/1-946 KNKKLSTYFG KLGFYFQRED VKVEISTETI SLSRGSRTSV LSWSDTAHVL bmy_00656T0/1-899 KNEKLSTYFG KLGFYFQRED MKIEISTETI SLSGGSRTSV L--------- BACU001765/1-946 KNEKLSTYFG KLGFYFQREG LKIEISTETI SLSRGSRTSV LSWSDTAHVL 801 850 ENSTTRP00000004757/1-945 NQRVLVSVKK EKTVTITLDK EMSFSVLLHR VWKKHPINVD FLGIYIPPTN ENSP00000351190/1-946 NQRVQISVKK EKVVTITLDK EMSFSVLLHR VWKKHPVNVD FLGIYIPPTN ENSBTAP00000018701/1-946 NQRVLVSVKK EKTVTVTLDK EMFFSVLLHR VWKKHPINVD FLGIYIPPTN bmy_00656T0/1-899 ---VLVSVKK EKTVTITLDK EMSFSVLLHR VWKKHPINVD FLGIYIPPTN BACU001765/1-946 NQRVLVSVKK EKTVTIALDK EMSFSVLLHR VWKKHPINVD FLGIYIPPTN 851 900 ENSTTRP00000004757/1-945 KFSLNVHGLI GQFMYEPKIH IFNERPGKDP EKPEANMDVK GQKLIVTXXX ENSP00000351190/1-946 KFSPKAHGLI GQFMQEPKIH IFNERPGKDP EKPEASMEVK GQKLIITRGL ENSBTAP00000018701/1-946 KFSPNVHGLI GQFMNEPKIH VFNERPGKDP EKPEASMEVK GQKLVVTRGL bmy_00656T0/1-899 KFSPHVHGLI GQFMYEPKIH IFNERPGKNP EKPEANMDVK GQKLIVTRGL BACU001765/1-946 KFSPHVHGLI GQFMYEPKIR IFNERPGKDP EKPEANMEVK GQKLIVTRGL 901 950 ENSTTRP00000004757/1-945 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XKDYFVPQLY SFLKWP ENSP00000351190/1-946 QKDYRTDLVF GTDVTCWFVH NSGKGFIDGH YKDYFVPQLY SFLKRP ENSBTAP00000018701/1-946 QKDYRTDRVF GTDVPCWFVH NSGKGFIDGH YKDYFVPQLY SFLRRP bmy_00656T0/1-899 QKDYRTDRVF GTDVPCWFVH NSGKGFIDGH YKDYFVPQLY SFLKWP BACU001765/1-946 QKDYRTDRVF GTDVACWFVH NSGKGFIDGH YKDYFVPQLY SFLKWP