KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:23 2014 Check: 00 .. Name: ENSTTRP00000010372/1-1290 Len: 1331 Check: 9613 Weight: 1.00 Name: ENSBTAP00000018720/1-1291 Len: 1331 Check: 3409 Weight: 1.00 Name: ENSP00000387170/1-1320 Len: 1331 Check: 9108 Weight: 1.00 Name: bmy_18159T0/1-689 Len: 1331 Check: 9665 Weight: 1.00 Name: BACU010986/1-1284 Len: 1331 Check: 1068 Weight: 1.00 // 1 50 ENSTTRP00000010372/1-1290 KSIVNIRKRM AAETQTLNFG PEWLRALSSG GSITSPPLSP ALPKYKLADY ENSBTAP00000018720/1-1291 ---------M AAETQTLNFG PEWLRALSSG GSITSPPLSP ALPKYKLADY ENSP00000387170/1-1320 ---------M AAETQTLNFG PEWLRALSSG GSITSPPLSP ALPKYKLADY bmy_18159T0/1-689 ---------- ---------- ---------- ---------- ---------- BACU010986/1-1284 ---------M AAETQTLNFG PEWLRALSSG GSITSPPLSP ALPKYKLADY 51 100 ENSTTRP00000010372/1-1290 RYGREEMLAL FLKDNKIPSD LLDKEFLPIL QEEPLPPLAL VPFTEEEQRN ENSBTAP00000018720/1-1291 RYGREEMLAL FLKDNKIPSD LLDKEFLPIL QEEPLLPLAL VPFTEEEQRN ENSP00000387170/1-1320 RYGREEMLAL FLKDNKIPSD LLDKEFLPIL QEEPLPPLAL VPFTEEEQRN bmy_18159T0/1-689 ---------- ---------- ---------- ---------- ---------- BACU010986/1-1284 RYGREEMLAL FLKDNKIPSD LLDKEFLPVL QEEPLPPLAL VPFTEEEQRN 101 150 ENSTTRP00000010372/1-1290 FSMSVNSAAV LRLTGRGGGG TVVGAPRGRS SSRGRGRGRG ECGFYQRSFD ENSBTAP00000018720/1-1291 FSMSVNSAAV LRLTGRGGGG TVVGAPRGRS SSRGRGRGRG ECGFYQRSFD ENSP00000387170/1-1320 FSMSVNSAAV LRLTGRGGGG TVVGAPRGRS SSRGRGRGRG ECGFYQRSFD bmy_18159T0/1-689 ---------- ---------- ---------- ---------- ---------- BACU010986/1-1284 FSMSVNSAAV LRLTGRGGGG TVVGAPRGRS SSRGRGRGRG ECGFYQRSFD 151 200 ENSTTRP00000010372/1-1290 EVEGVFGRGG GREMHRSQSW EERGDRRFEK PGRKDVGKKI EYFLMYSPVL ENSBTAP00000018720/1-1291 EVEGVFVRGG GREMHRSQSW EERGDRRFDK PGRKDV---- ---------- ENSP00000387170/1-1320 EVEGVFGRGG GREMHRSQSW EERGDRRFEK PGRKDVGKKN GYYCMYSPVL bmy_18159T0/1-689 ---------- ---------- ---------- ---------- ---------- BACU010986/1-1284 EVEGVFGRGG GREMHRSQSW EERGDRRFEK PGRKDV---- ---------- 201 250 ENSTTRP00000010372/1-1290 LLGQ-LYTGR PNFEEGGPTS VGRKHEFIRS ESENWRIFRE EQNGEDEDGG ENSBTAP00000018720/1-1291 --------GR PNFEEGGPVS VGRKHEFIRS ESGNWRIFRE EQNGEDEDGG ENSP00000387170/1-1320 LLGQPLCQGR PNFEEGGPTS VGRKHEFIRS ESENWRIFRE EQNGEDEDGG bmy_18159T0/1-689 ---------R PNFEEGGPTS VGRKHEFIRS ESENWRIFRE EQNGEDEDGG BACU010986/1-1284 --------GR PNFEEGGPTS VGRKHEFIRS ESENWRIFRE EQNGEDEDGG 251 300 ENSTTRP00000010372/1-1290 WRLAGSRRDG ERWRPHSPDG PRSASWREHM ERRRKFELDF RDRDDERGYR ENSBTAP00000018720/1-1291 WRLTGSRRDG ERWRPHSPDG PRSAGWREHM ERRRRFEFDF RDRDDERGYR ENSP00000387170/1-1320 WRLAGSRRDG ERWRPHSPDG PRSAGWREHM ERRRRFEFDF RDRDDERGYR bmy_18159T0/1-689 WRLAGSRRDG ERWRPHSPDG PRSAGWREHM ERRRRFEFDF RERDDERGYR BACU010986/1-1284 WRLAGSRRDG ERWRPHSPDG PRSAGWREHM ERRRRFEFDF RDRDDERGYR 301 350 ENSTTRP00000010372/1-1290 MVRSGSGSIH DDRYSLP-WC L-DADEDMGT -DSSGAFLSX XXXXXXXXXX ENSBTAP00000018720/1-1291 RVRSGSGSID DDRDSLPEWC LEDAEEEMGT FDSSGAFLSL KKVQKEPIPE ENSP00000387170/1-1320 RVRSGSGSID DDRDSLPEWC LEDAEEEMGT FDSSGAFLSL KKVQKEPIPE bmy_18159T0/1-689 RVRSGSGSID DDRDSLPEWC LEDAEEEMGT FDSSGAFLSL KKVQKEPIPE BACU010986/1-1284 RVRSGSGSID DDRDSLPEWC LEDAEEEMGT FDSSGAFLSL KKVQKEPIPE 351 400 ENSTTRP00000010372/1-1290 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXASEE ENSBTAP00000018720/1-1291 EQEMDFRPVE EGEECSDSEG SHNEEAKEPD KTNKKEAEKT DRTGVEASEE ENSP00000387170/1-1320 EQEMDFRPVD EGEECSDSEG SHNEEAKEPD KTNKKEGEKT DRVGV-ASEE bmy_18159T0/1-689 EQEMDFRPVE EGEECSDSEG SHNEEAKEPD KTNKKEGEKT DRVGVEASEE BACU010986/1-1284 EQEMDFRPVE EGEECSDSEG SHNEEAKEPD KTNKKEGEKT DRVGVEASEE 401 450 ENSTTRP00000010372/1-1290 TPQTSTSSAR PGT-SDHQPQ EAPQFERKEE PKSEQMEKAE EESRTENSLS ENSBTAP00000018720/1-1291 TTQTSSSSAR PGSPSD-QPQ EAPQFERKEE SKTEQMEKAE EESRTENSLS ENSP00000387170/1-1320 TPQTSSSSAR PGTPSDHQSQ EASQFERKDE PKTEQTEKAE EETRMENSLP bmy_18159T0/1-689 TPQTSTSSAR PGTPSDLQPQ EAPQFERKEE PKTEQMEKAE EESRTENSLS BACU010986/1-1284 TPQTSTSSAR PGTPSDLQPQ EAPQFERKEE PKTEQMEKAE EESRTENSLS 451 500 ENSTTRP00000010372/1-1290 TKVPSRGDEM VPGVQQPLSQ IPSDTASPLL ILPPPVPNPS PALRPVETPV ENSBTAP00000018720/1-1291 TKVSSRGDEV LPAVQQPLSQ IPSDTASPLL ILPPPVPSPS PALRPVETPV ENSP00000387170/1-1320 AKVPSRGDEM VADVQQPLSQ IPSDTASPLL ILPPPVPNPS PTLRPVETPV bmy_18159T0/1-689 AKVPSRGDEM VPGVQQPLSQ IPSDAASPLL ILPPPVPNPS PALRPVETPV BACU010986/1-1284 AKVPSRGDEM VPGVQQPLSQ IPSDTASPLL ILPPPVPNPS PALRPVETPV 501 550 ENSTTRP00000010372/1-1290 VGAPGMGSVS TEPDDEEGLK HLEQQAEKMV AYLQDSALDD ERLASKLQEH ENSBTAP00000018720/1-1291 VGAPGMGSVP TEPDDEEGLK HLEQQAEKMV AYLQDSALDD ERLASKLQEH ENSP00000387170/1-1320 VGAPGMGSVS TEPDDEEGLK HLEQQAEKMV AYLQDSALDD ERLASKLQEH bmy_18159T0/1-689 VGAPGMGSVS TEPDDEEGLK HLEQQAEKMV AYLQDSALDD ERLASKLQEH BACU010986/1-1284 VGAPGMGSVS AEPDDEEGLK HLEQQAEKMV AYLQDSALDD ERLASKLQEH 551 600 ENSTTRP00000010372/1-1290 RAKGVSIPLM HEAMQKWYYK DPQGEIQGPF NNQEMAEWFQ AGYFTMSLLV ENSBTAP00000018720/1-1291 RAKGVSIPLM HEAMQKWYYK DPQGEIQGPF NNQEMAEWFQ AGYFTMSLLV ENSP00000387170/1-1320 RAKGVSIPLM HEAMQKWYYK DPQGEIQGPF NNQEMAEWFQ AGYFTMSLLV bmy_18159T0/1-689 RAKGVSIPLM HEAMQKWYYK DPQGEIQGPF NNQEMAEWFQ AGYFTMSLLV BACU010986/1-1284 RAKGVSIPLM HEAMQKWYYK DPQGEIQGPF NNQEMAEWFQ AGYFTMSLLV 601 650 ENSTTRP00000010372/1-1290 KRACDESFQP LGDIMKMWGR VPFSPGPAPP PHMGELDQER LTRQQELTAL ENSBTAP00000018720/1-1291 KRACDESFQP LGDIMKMWGR VPFSPGPAPP PHMGELDQER LTRQQELTAL ENSP00000387170/1-1320 KRACDESFQP LGDIMKMWGR VPFSPGPAPP PHMGELDQER LTRQQELTAL bmy_18159T0/1-689 KRACDESFQP LGDIMKMWGR VPFSPGPAPP PHMGELDQER LTRQQELTAL BACU010986/1-1284 KRACDESFQP LGDIMKMWGR VPFSPGPAPP PHMGELDQER LTRQQELTAL 651 700 ENSTTRP00000010372/1-1290 YQMQHLQYQQ FLIQQQYAQV LAQQQKAALS SQQQQQLALL LQQFQALKMR ENSBTAP00000018720/1-1291 YQMQHLQYQQ FLIQQQYAQV LAQQQKAALS SQQQQQLALL LQQFQALKMR ENSP00000387170/1-1320 YQMQHLQYQQ FLIQQQYAQV LAQQQKAALS SQQQQQLALL LQQFQTLKMR bmy_18159T0/1-689 YQMQHLQYQQ FLIQQQYAQV LAQQQKAALS SQQQQQLALL LQQFQALKMR BACU010986/1-1284 YQMQHLQYQQ FLIQQQYAQV LAQQQKAALS SQQQQQLALL LQQFQALKMR 701 750 ENSTTRP00000010372/1-1290 ISDQNVIPSV TRSVSVPDTG SIWELQPTAS QPTVWEGGSV WDLPLDTTTP ENSBTAP00000018720/1-1291 ISDQNIIPSV TRSVSVPDTG SIWELQPAPS QPTVWEGGSV WDLPLDPATP ENSP00000387170/1-1320 ISDQNIIPSV TRSVSVPDTG SIWELQPTAS QPTVWEGGSV WDLPLDTTTP bmy_18159T0/1-689 ISDQNVIPSV TRSVSVPDTG SIWELQPATS QPTVWEGGSV WDLPLDTTTP BACU010986/1-1284 ISDQNVIPSV TRSVSVPDTG SIWELQPTTS QPTVWEGGSV WDLPLDTTTP 751 800 ENSTTRP00000010372/1-1290 GPALEQLQQM EKAKAAKLEQ ERREAEMRAK REEEDRKRQE ELRRQQEEIL ENSBTAP00000018720/1-1291 APALEQLQQM EKAKAAKLEQ ERREAEMRAK REEEERKRQE ELRRQQEEIL ENSP00000387170/1-1320 GPALEQLQQL EKAKAAKLEQ ERREAEMRAK REEEERKRQE ELRRQQEEIL bmy_18159T0/1-689 GPALEQLQQM EKAKAAK--- ---------- ---------- ---------- BACU010986/1-1284 GPALEQLQQM EKAKAAKLEQ ERREAEMRAK REEEDRKRQE ELRRQQEEIL 801 850 ENSTTRP00000010372/1-1290 RRQQEEERKR REEEELARRK QEEALRRQRE QEIALRRQRE EEERQQQEEA ENSBTAP00000018720/1-1291 RRQQEEERKR REEEELARRK QEEALRRQRE QEIALRQQRE EEERQQQEEA ENSP00000387170/1-1320 RRQQEEERKR REEEELARRK QEEALRRQRE QEIALRRQRE EEERQQQEEA bmy_18159T0/1-689 ---------- ---------- -EEALRRQRE QEIALRRQRE EEERQQQEEA BACU010986/1-1284 RRQQEEERKR REEEELARRK QEEALRRQRE QEIALRRQRE EEERQQQEEA 851 900 ENSTTRP00000010372/1-1290 LRRLEERRRE EEERRKQEEL LRKQEEEAAK WAREEEEAQR RLEENRLRME ENSBTAP00000018720/1-1291 LRRLEERRRE EEERRKQEEL LRKQEEEAAK WAREEEEAQR RLEENRLRME ENSP00000387170/1-1320 LRRLEERRRE EEERRKQEEL LRKQEEEAAK WAREEEEAQR RLEENRLRME bmy_18159T0/1-689 LRRLEERRRE EEERRKQEEL LRKQEEEAAK WAREEEEAQR RLEENRLRME BACU010986/1-1284 LRRLEERRRE EEERRKQEEL LRKQEEEAAK WAREEEEAQR RLEENRLRME 901 950 ENSTTRP00000010372/1-1290 EEAARLRHEE EERKRKELEL QRQKELMRQR QQQQEALRRL QQQQQQQQLA ENSBTAP00000018720/1-1291 EEAARLRHEE EERKRKELEL QRQKELLRQR QQQQEALRRL QQQQQQQQLA ENSP00000387170/1-1320 EEAARLRHEE EERKRKELEV QRQKELMRQR QQQQEALRRL QQQQQQQQLA bmy_18159T0/1-689 EEAARLRHEE EERKRKELEL QRQKELMRQR QQQQEALRRL QQQQQQQQLA BACU010986/1-1284 EEAARLRHEE EERKRKELEL QRQKELMRQR QQQQEALRRL QQQQQQQQLA 951 1000 ENSTTRP00000010372/1-1290 QMKLPSSSTW GQQSNTTACQ SQATLSLAEI QKLEEERERQ LREEQRRQQR ENSBTAP00000018720/1-1291 QMKLPSSSTW GQQSNTTACQ SQATLSLAEI QKLEEERERQ LREEQRRQQR ENSP00000387170/1-1320 QMKLPSSSTW GQQSNTTACQ SQATLSLAEI QKLEEERERQ LREEQRRQQR bmy_18159T0/1-689 QM-------- ---------- ---------- ---------- ---------- BACU010986/1-1284 QMKLPSSSTW GQQSNTTACQ SQATLSLAEI QKLEEERERQ LREEQRRQQR 1001 1050 ENSTTRP00000010372/1-1290 ELMKALQQQQ QQQQQKLSGW GNVSKPAGTA KSFLEIQQEE ARQMQKQQQQ ENSBTAP00000018720/1-1291 ELMKALQQQQ QQQQQKLSGW GNVSKPAGTA KSLLEIQQEE ARQMQK-QQQ ENSP00000387170/1-1320 ELMKALQQQQ QQQQQKLSGW GNVSKPSGTT KSLLEIQQEE ARQMQK-QQQ bmy_18159T0/1-689 ---------- ---------- ---------- ---------- ---------- BACU010986/1-1284 ELMKALQQQQ QQQQQKLSGW GNVSKPAGTA KSLLEIQQEE ARQMQK---Q 1051 1100 ENSTTRP00000010372/1-1290 QQQQHQQPSR ARNNPHSNLH TSLGNSVWGS INAGPPNQWA SDLVSSIWSN ENSBTAP00000018720/1-1291 QQQQHQQPNR ARNNTHSNLH TSIGNSVWGS INTGPPNQWA SDLVSSIWSS ENSP00000387170/1-1320 QQQQHQQPNR ARNNTHSNLH TSIGNSVWGS INTGPPNQWA SDLVSSIWSN bmy_18159T0/1-689 ---------- ---------- ---------- ---------- ---------- BACU010986/1-1284 QQQQHQQPSR ARNNPHSNLH TSLGNSVWGS INAGPPNQWA SDLVSSIWSN 1101 1150 ENSTTRP00000010372/1-1290 ADTKNSNMGF WDDAVKEVGP RNSTNKNK-N ASLSKSVGVS NRQNKKVEEE ENSBTAP00000018720/1-1291 ADTKNSNMGF WDDAVKEVGP RNSTNKNK-N ASLSKSVGVS NRQNKKVEEE ENSP00000387170/1-1320 ADTKNSNMGF WDDAVKEVGP RNSTNKNKNN ASLSKSVGVS NRQNKKVEEE bmy_18159T0/1-689 ---------- ---------- ---------- ---------- ---------- BACU010986/1-1284 ADTKNSNMGF WDDAVKEVGP RNSTNKNKNN ASLSKSVGVS NRQNKKVEEE 1151 1200 ENSTTRP00000010372/1-1290 EKLLKLFQGV NKAQDGFTQW CEQMLHALNT ANNLDVPTFV SFLKEVESPY ENSBTAP00000018720/1-1291 EKLLKLFQGV NKAQDGFTQW CEQMLHALNT ANNLDVPTFV SFLKEVESPY ENSP00000387170/1-1320 EKLLKLFQGV NKAQDGFTQW CEQMLHALNT ANNLDVPTFV SFLKEVESPY bmy_18159T0/1-689 ---------- ---------- ---------- ---------- ---------- BACU010986/1-1284 EKLLKLFQGV NKAQDGFTQW CEQMLHALNT ANNLDVPTFV SFLKEVESPY 1201 1250 ENSTTRP00000010372/1-1290 EVHDYIRAYL GDTSEAKEFA KQFLERRAKQ KAS------- QRQPQQQQPP ENSBTAP00000018720/1-1291 EVHDYIRAYL GDTSEAKEFA KQFLERRAKQ KANQRQQQQQ QQQQQQQQQQ ENSP00000387170/1-1320 EVHDYIRAYL GDTSEAKEFA KQFLERRAKQ KANQQRQQQQ LPQQQQQQPP bmy_18159T0/1-689 ---------- ---------- ---------- ---------- ---------- BACU010986/1-1284 EVHDYIRAYL GDTSEAKEFA KQFLERRAKQ KAS------- QRPPQQQQPP 1251 1300 ENSTTRP00000010372/1-1290 ------PQQQ DSVWGMNHSA LHSVFQTNQS NNQQSNFEAV QSGKKKKKQK ENSBTAP00000018720/1-1291 ------QQQQ DSVWGMNHSA LHSVFQTNQT NNQQSSFEAV QSGKKKKKQK ENSP00000387170/1-1320 QQPPQQPQQQ DSVWGMNHST LHSVFQTNQS NNQQSNFEAV QSGKKKKKQK bmy_18159T0/1-689 ---------- ---------- ---------- ---------- ---------- BACU010986/1-1284 ------PQQQ DSVWGMNHSA LHSVFQTNQS NNQQSNFEAV QSGKKKKKQK 1301 1350 ENSTTRP00000010372/1-1290 MVRADPSLL- ---------- ---------- - ENSBTAP00000018720/1-1291 MVRADPSLLG FSVNASSERL NMGEIETVDD Y ENSP00000387170/1-1320 MVRADPSLLG FSVNASSERL NMGEIETLDD Y bmy_18159T0/1-689 ---------- ---------- ---------- - BACU010986/1-1284 MVRADPSLLG FSVNASSERL NMGEIETLDD Y