KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:24 2014 Check: 00 .. Name: ENSP00000255613/1-462 Len: 556 Check: 4730 Weight: 1.00 Name: ENSBTAP00000018728/1-457 Len: 556 Check: 2955 Weight: 1.00 Name: ENSTTRP00000000539/1-455 Len: 556 Check: 9464 Weight: 1.00 Name: bmy_16785T0/1-545 Len: 556 Check: 4577 Weight: 1.00 Name: BACU009047/1-329 Len: 556 Check: 4819 Weight: 1.00 // 1 50 ENSP00000255613/1-462 ---------- ---------- ---------- -MGPDRVTAR ELCENDDLAT ENSBTAP00000018728/1-457 ---------- ---------- ---------- -MGPDRVTAR ELCENDDLAT ENSTTRP00000000539/1-455 ---------- ---------- ---------- -MGPDRVTAR ELCENDDLAT bmy_16785T0/1-545 GEGCGRWWQP QRGRLRRRRR RSGRQHGAWG TMGPDRVTAR ELCENDDLAT BACU009047/1-329 ---------- ---------- ---------- -MGPDRVTAR ELCENDDLAT 51 100 ENSP00000255613/1-462 SLVLDPYLGF RTHKMNVSPV PPLRRQQHLR SALETFLRQR DLEAAYRALT ENSBTAP00000018728/1-457 SLVLDPYLGF RTHKMNVSPV PPLRRQHHLR SALEAFLRQR DLEAAYRALT ENSTTRP00000000539/1-455 SLVLDPYLGF RTHKMNVSPV PPLRRQHHLR SALEAFLRQR DLEAAYRALT bmy_16785T0/1-545 SLVLDPYLGF RTHKMNVSPV PPLRRQHHLR SALEAFLRQR DLEAAYRALT BACU009047/1-329 SLVLDPYLGF RTHKMNVSPV PPLRRQHHLR SALEAFLRQR DLEAAYRALT 101 150 ENSP00000255613/1-462 LGGWTARYFQ SRGPRQEAAL KTHVYRYLRA FLPESGFTIL PCTRYSMETN ENSBTAP00000018728/1-457 LGGWMAHYFQ SRGPRQEAAL KTHIYRYLRA FLPESGFTIL PCTRYSMETN ENSTTRP00000000539/1-455 LGGWMAHYFQ SRGPRQEAAL KTHIYRYLRA FLPESGFTIL PCTRYSMETN bmy_16785T0/1-545 LGGWMAHYFQ SRGPRQEAAL KTHIYRYLRA FLPESGFTIL PCTRYSMETN BACU009047/1-329 LGGWMAHYFQ SRGPRQEAAL KTHIYRYLRA FLPESGFTIL PCTRYSMETN 151 200 ENSP00000255613/1-462 GAKIVSTRAW KKNEKLELLV GCIAELREAD EGLLRAGEND FSIMYSTRKR ENSBTAP00000018728/1-457 GAKIVSTRAW KKNEKLELLV GCIAELREAD EELLRAGEND FSIMYSTRKR ENSTTRP00000000539/1-455 GAKIVSTRAW KKNEKLELLV GCIAELREAD EGLLRAGEND FSIMYSTRKR bmy_16785T0/1-545 GAKIVSTRTW KKNEKLELLV GCIAELREAD EGLLRAGEND FSIMYSTRKR BACU009047/1-329 GAKIVSTRAW KKNEKLELLV GCIAELREAD EGLLRAGEND FSIMYSTRKR 201 250 ENSP00000255613/1-462 SAQLWLGPAA FIN------- ---------- ---------- ---------- ENSBTAP00000018728/1-457 SAQLWLGPAA FIN------- ---------- ---------- ---------- ENSTTRP00000000539/1-455 SAQLWLGPAA FIN------- ---------- ---------- ---------- bmy_16785T0/1-545 SAQLWLGXXX XXXXXXXXXX XXXXXXXXXX XGASGGGVVP RLSGSLTQFS BACU009047/1-329 SAQLWLGPAA FIR------- ---------- ---------- ---------- 251 300 ENSP00000255613/1-462 ---------- ---------- -HDCK-PNCK FVPADGNAAC VKVLRDIEPG ENSBTAP00000018728/1-457 ---------- ---------- -HDCK-PNCK FVPADGNAAC VKVLRDIEPG ENSTTRP00000000539/1-455 ---------- ---------- -HDCK-PNCK FVPADGNAAC VKVLRDIEPG bmy_16785T0/1-545 SLPATPNWLQ TANPTARPPP GQGAEPPGPQ FVPADGNAAC VKVLRDIEPG BACU009047/1-329 ---------- ---------- -QGAEPPGPQ FVPADGNAAC VKVLRDIEPG 301 350 ENSP00000255613/1-462 DEVTCFYGEG FFGEKNEHCE CHTCERKGEG AFRTRPREPA LPPRPLDKYQ ENSBTAP00000018728/1-457 DEVTCFYGEG FFGEKNEHCE CYTCERRGEG AFRLRPREP- LPPRPLDKYE ENSTTRP00000000539/1-455 DEVTCFYGEG FFGEKNEHCE CYTCERRGEG AFRLQPKEP- LPPRPMDKYE bmy_16785T0/1-545 DEVTCFYGEG FFGEKNEHCE CYTCERRGEG AFRLQPKDP- LPPRPVDKYE BACU009047/1-329 DEVTCFYGEG FFGEKNEHCE CYTCERRGEG AFRLQPKDP- LPPRPVDKYE 351 400 ENSP00000255613/1-462 LRETKRRLQQ GLDSGSRQGL LGPRACVHPS PLRRDPFCAA CQPLRLPACS ENSBTAP00000018728/1-457 LRETKRRLQQ GLD------- -GPRSCAHPP PPRRDPFCAA CQPLRPPPCS ENSTTRP00000000539/1-455 LRETKRRLQQ GLD------- -GPRACAHPP PLRRDLFCAA CQPLRPPPCG bmy_16785T0/1-545 LRETKRRLQQ GLH------- -GPRACAHLP PLRRDPFCAA CQPLRPPPCG BACU009047/1-329 LRETKRRLQQ GLH------- -GPRACAHPP PLRRDPFC-- ---------- 401 450 ENSP00000255613/1-462 ARPDTSPLWL QWLPQPQPRV RPRKRRRPR- -PRRAPVLST HHAARVSLHR ENSBTAP00000018728/1-457 ARLDASPLWL HWLPQPQLRV RPRRRRRLRL QPRQALPPPV LPAARVSLHR ENSTTRP00000000539/1-455 ARPDASPLWL QWLPQPQLRV RPRRRRRPQ- -PRRAPAPPV LRAARVSLHR bmy_16785T0/1-545 ARPDASPLWL QWLPQPQLRV RPRRRRRLQ- -PRRAPAPPV LRAARVSLHR BACU009047/1-329 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000255613/1-462 WGGCGPHCRL RGEALVALGQ PPHARWAPQQ DWHWARRYGL PYVVRVDLRR ENSBTAP00000018728/1-457 WGGCGPHCRL RAEARVALVQ APRACWAPQQ DWHWARRYGL PSVVRVDLSR ENSTTRP00000000539/1-455 WGGCGPHCCL QAEALVALGP AARARWAPQQ DWHWARRYGL PYVVRVDLSR bmy_16785T0/1-545 WGGCGPHCCL QAEALVALGP AARARWAPQQ DWHWARRYGL PYVVRVDLSR BACU009047/1-329 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000255613/1-462 LAPAPPAT-- PAPAGTPGPI LIPKQALAFA PFSPPKRLRL VVSHGSIDLD ENSBTAP00000018728/1-457 VVPALPATAN PAPSGTPGPI PVPKQALAFT PFSPPKRLRL VVSHGSIDLD ENSTTRP00000000539/1-455 VAPAPPATAT PVPAGTPGPI PIPKQALAFA PFSPPKRLRL VVSHGSIDLD bmy_16785T0/1-545 VAPAPPATAT PAPAGTPGPI PIPKQALAFA PFSPPKRLRL VVSHGSIDLD BACU009047/1-329 ---------- -------GPI PIPKQPLAFA PFSPPKRLRL VVSHGSIDLD 551 600 ENSP00000255613/1-462 VGGEEL ENSBTAP00000018728/1-457 VNSDGP ENSTTRP00000000539/1-455 VNGDGP bmy_16785T0/1-545 VNGDGP BACU009047/1-329 VNGDGP