KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:05:25 2014 Check: 00 .. Name: ENSTTRP00000002346/1-481 Len: 509 Check: 2274 Weight: 1.00 Name: ENSBTAP00000018735/1-482 Len: 509 Check: 7946 Weight: 1.00 Name: bmy_10985T0/1-349 Len: 509 Check: 3397 Weight: 1.00 Name: BACU017942/1-343 Len: 509 Check: 7776 Weight: 1.00 // 1 50 ENSTTRP00000002346/1-481 MAAAPGGSAP PAGPGPRLGF STADSGVGMS GLNPGPAVPM KDHDAIKLFV ENSBTAP00000018735/1-482 MAAAPGGSAP PAGPGPRLGF STADSGIGMS GLNPGPAVPM KDHDAIKLFV bmy_10985T0/1-349 ---------- ---------- ---------- ---------- ---------- BACU017942/1-343 ---------- ---------- --------MS GLNPGPAVPM KDHDAIKLFV 51 100 ENSTTRP00000002346/1-481 GQIPRGLDEQ DLKPLFEEFG RIYELTVLKD RLTGLHKGCA FLTYCARDSA ENSBTAP00000018735/1-482 GQIPRGLDEQ DLKPLFEEFG RIYELTVLKD RLTGLHKGCA FLTYCARDSA bmy_10985T0/1-349 ---------- ---------- ---------- ---------- ---------- BACU017942/1-343 GQIPRGLDEQ DLKPLFEEFG RIYELTVLKD RLTGLHKGCA FLTYCARDSA 101 150 ENSTTRP00000002346/1-481 LKAQSALHEQ KTLPGMNRPI QVKPAASEGR GEDRKLFVGM LGKQQGEEDV ENSBTAP00000018735/1-482 LKAQSALHEQ KTLPGMNRPI QVKPAASEGR GEDRKLFVGM LGKQQGEEDV bmy_10985T0/1-349 ---------- ---------- ---------- ---------M LGKQQGEEDV BACU017942/1-343 LKAQSALHEQ KTLPGMNRPI QVKPAASEGR GEDRKLFVGM LGKQQGEEDV 151 200 ENSTTRP00000002346/1-481 RRLFQPFGHI EECTVLRSPD GTSKGCAFVK FGSQGEAQAA IQSLHGSRTM ENSBTAP00000018735/1-482 RRLFQPFGHI EECTVLRSPD GTSKGCAFVK FGSQGEAQAA IQSLHGSRTM bmy_10985T0/1-349 RRLFQPFGHI EECTVLRSPD GTSKGCAFVK FGSQGEAQAA IQSLHGSRTM BACU017942/1-343 RRLFQPFGHI EECTVLRSPD GTSKGCAFVK FGSQGEAQAA IQSLHGSRTM 201 250 ENSTTRP00000002346/1-481 AGASSSLVVK LADTDRERAL RRMQQXXXXX XXXXXXXXXX XXXXXXXXXI ENSBTAP00000018735/1-482 AGASSSLVVK LADTDRERAL RRMQQMAGQL GAFHPAPLPL GACGAYTTAI bmy_10985T0/1-349 AGASSSLVVK LADTDRERAL RRMQQMAGQL GALQPAPLPL GACGAYTTAI BACU017942/1-343 AGASSSLVVK LADTDRERAL RRMQQMAGQL GALQPAPLPL GACGAYTTA- 251 300 ENSTTRP00000002346/1-481 LQHQAALLAA VQGPGLGPVA AVAAQMQHVA AFSLVAAPLL PAA------- ENSBTAP00000018735/1-482 LQHQAALLAA AQGPGLGPVA AVAAQMQHVA AFSLVAAPLL PAAA------ bmy_10985T0/1-349 LQHQAALLAA AQGPGLGPVA AVAAQMQHVA AFSLVAAPLL PAAGTVRRGR BACU017942/1-343 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000002346/1-481 ---------- ---------- -AANSPQGGG PSTLPGLPAP IGVNGFGPLT ENSBTAP00000018735/1-482 ---------- ---------- -AANSPPGGG PGTLPGLPAP IGVNGFGPLT bmy_10985T0/1-349 GPRRGRAGAG LRPDSPTSSP PAANSPQGGG PSTLPGLPAP IGVNGFGPLT BACU017942/1-343 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000002346/1-481 PQTNGQPGSD SLYNNGLSPY PAQSPGVADP LQQAYAGMHH YAAAYPSAYA ENSBTAP00000018735/1-482 PQTNGQPGSD SLYNNGLSPY PAQSPGVADP LQQAYAGMHH YAAAYPSAYA bmy_10985T0/1-349 PQTNGQPGSD SLYNNGLSPY P--------- ---------- --AAYPSAYA BACU017942/1-343 ---------- ----NDLSR- ---------- ---------- --AAYPSAYA 401 450 ENSTTRP00000002346/1-481 PVSTTFPQQP SGLPQQQREG PEGCNLFIYH LPQEFGDAEL IQTXXXXXXX ENSBTAP00000018735/1-482 PVSTTFPQQP SALPQQQREG PEGCNLFIYH LPQEFGDAEL IQTFLPFGAV bmy_10985T0/1-349 PVSTTFPQQP SGLPQQQREG PEGCNLFIYH LPQEFGDAEL IQTFLPFGAV BACU017942/1-343 PVSTTFPQQP SGLPQQQREG PEGCNLFIYH LPQEFGDAEL IQTFLPFGAV 451 500 ENSTTRP00000002346/1-481 XXXXXXXXXX XXXXXXXXFV SFDNPTSAQT AIQAMNGFQI GMKRLKVQLK ENSBTAP00000018735/1-482 VSAKVFVDRA TNQSKCFGFV SFDNPTSAQT AIQAMNGFQI GMKRLKVQLK bmy_10985T0/1-349 VSAKVFVDRA TNQSKCFGFV SFDNPTSAQT AIQAMNGFQI GMKRLKVQLK BACU017942/1-343 VSAKVFVDRA TNQSKCFGFV SFDNPTSAQT AIQAMNGFQI GMKRLKVQLK 501 550 ENSTTRP00000002346/1-481 RPKDANRPY ENSBTAP00000018735/1-482 RPKDANRPY bmy_10985T0/1-349 RPKDANRPY BACU017942/1-343 RPKDANRPY