KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:05:26 2014 Check: 00 .. Name: ENSP00000317396/1-938 Len: 1184 Check: 8868 Weight: 1.00 Name: ENSBTAP00000018737/1-1180 Len: 1184 Check: 8239 Weight: 1.00 Name: bmy_04199T0/1-1065 Len: 1184 Check: 9756 Weight: 1.00 Name: ENSTTRP00000005192/1-1157 Len: 1184 Check: 7207 Weight: 1.00 // 1 50 ENSP00000317396/1-938 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018737/1-1180 MSPDVPLLND YKQDFFLKRF PQTVLGGPRL KLGYCAPPYI YVHQIVLFLV bmy_04199T0/1-1065 MSPDVPLLND YKQDFFLKRF PQTVLGGPRL KLGYCAPPYI YVNQIILFLM ENSTTRP00000005192/1-1157 MSPDVPLLND YKQDFFLKRF PQTVLRGPRL YLGYCAPPYI YVNQIILFLM 51 100 ENSP00000317396/1-938 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018737/1-1180 PWILGGIGTL LYQLGILEDY HTAALSGGLM LFTAFVIQFT SLYARNKSVT bmy_04199T0/1-1065 PWVLGGIGTL LYQLGILEDY YTAALSGGLM LFTAFVIQFT SLYARSRSVT ENSTTRP00000005192/1-1157 PWVXXXXXXX XXXLGILEDY YTAALSGGLM LFTAFVIQFT SLYARSRWVT 101 150 ENSP00000317396/1-938 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018737/1-1180 VERMLTTDIL AEEDEHEFTG CAGAETIKFL IPGKKHTANT VFHSVLAGLL bmy_04199T0/1-1065 VERMLTTDIL AEEDEHEFTS CAGAETIKFL IPGKKHTANI VFHSVLAGLV ENSTTRP00000005192/1-1157 VERMLTTDIL AEEDEHEFTS CAGAETIKFL IPGKKHTANT VFHSVLAGLV 151 200 ENSP00000317396/1-938 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018737/1-1180 CGLGTWYLLP HRITLLYGSA GGTVLLFVFG WMTLCIGEYS LIVNTPTESA bmy_04199T0/1-1065 CGLGTWYLLP NRITLLYGST GGTVLLFVFG WMTLCIGEYS LIVNTATETA ENSTTRP00000005192/1-1157 CGLGTWYLLP NRITLLYSSA GGTVLLFFFG WMTLCIGEYS LIVNTATETA 201 250 ENSP00000317396/1-938 ---------- ---------- ---------- ----MPALEH MNQILHILFV ENSBTAP00000018737/1-1180 TFQTQDAYEI TPLLRPVYIF FFISIDLAHR FMVNIPALEQ MNQILHILFI bmy_04199T0/1-1065 TFQTQDTYEI TPLMRPLYIF FFVSIDLAHR FMVNIPVLEQ MNQILHILFI ENSTTRP00000005192/1-1157 TFQTQDTYEI TPLMRPLYIF FFVSIDLAHR FMVNIPVLEQ INQILHILFI 251 300 ENSP00000317396/1-938 FLPFLWALGT LPPPDALLLW AMEQVLEFGL GGSSMSTHLR LLVMFIMSAG ENSBTAP00000018737/1-1180 FLPFFWAFGT LPPPDALFLW AMEQVLEFGL GGSSMSTHLR LLIMFIISAG bmy_04199T0/1-1065 FLPFLWALGT LPPPDALFLW AMEQVLEFGL GGSSMSTHLR LLIMFIISTG ENSTTRP00000005192/1-1157 FLPFLWALGT LPPPDALFLW AMEQVLEFGL GGSSMSTHLR LLIMFIISTG 301 350 ENSP00000317396/1-938 TAIASYFIPS TVGVVLFMTG FGFLLSLNLS DM-------- -GHKIGTKSK ENSBTAP00000018737/1-1180 TAVASYFIPS TVGVVLFMTG LGFLLSLNLS EMVLVFKHSV TRHRVGTKSN bmy_04199T0/1-1065 TAVTSYFIPS TVGVVLFMTG LGFLLSLNLS EMVFGFKHSV TGHRVGTKSK ENSTTRP00000005192/1-1157 TAVTSYFIPS TVGVVLFMTG LGFLLSLNLS EI-------- -VHRVGTESK 351 400 ENSP00000317396/1-938 DLPSGPEKHF SWKECLFYII ILVLALLETS LLHHFAGFSQ ISKSNSQAIV ENSBTAP00000018737/1-1180 ALSSGSEIRF TWREYLFYSV VLVLALLETG LLHHFASFSQ TSKNSPQAVV bmy_04199T0/1-1065 ALPNSSEKQF TWKEYLFYSI VLVLALLETG LLHHFAGFSQ ISKNSPQAIV ENSTTRP00000005192/1-1157 ALPNGLEKQF TWKEYLFYSI VLVLALLETG LLHHFAGFSQ NSKNSPQAIV 401 450 ENSP00000317396/1-938 GYGLMILLII LWILREIQSV YIIGIFRNPF YPKDVQTVTV FFEKQTRLMK ENSBTAP00000018737/1-1180 GYTLMILFII LWILKEIQSI YIFGIFRNPF YPKDVQTVTL FLEKQTKLMK bmy_04199T0/1-1065 GYILMILFII LWILKEIQSV YIFGIFRNPI YPKHAQTVTL FLEKQTKLMK ENSTTRP00000005192/1-1157 GYILMILFII LWILKEIQSV YIFGIFRNPI YPKHVRTVTL FLEKQTTLMK 451 500 ENSP00000317396/1-938 IGIVRRILLT LVSPFAMIAF LSLDSSLQGL HSVSVCIGFT RAFRMVWQNT ENSBTAP00000018737/1-1180 IGVVRRILIN LVSPLAMIAF LSLDSSLQRL HSVSVSIGFT RAFRMVWQNT bmy_04199T0/1-1065 IGVVRRILIN LVSPFAMIAF LSLDSSLQGL HSVSVSIGFT RAFRM----- ENSTTRP00000005192/1-1157 IGVVRRILIN LVSPFAMIAF LSLDSSLQGL HSVSVSIGFT RAFRMVWQNT 501 550 ENSP00000317396/1-938 ENALLETVIV STVH-LISST DIWWNRSLDT GLRLLLVGII RDRLIQFISK ENSBTAP00000018737/1-1180 ENALLETVIV SAVHLLISNT DLWWSRSLDT GIKLLLVGIM RDRLIQFIAK bmy_04199T0/1-1065 ---------- ---------- ---------- ------VGIM RDRLIQFISK ENSTTRP00000005192/1-1157 ENALLETVIV SSVHLLISNT DIWWNRNLDT GIRLLLVGIM RDRLIQFISK 551 600 ENSP00000317396/1-938 LQFAVTVLLT SWTEKKQRRK TTATLCILNI VFSPFVLVII VFSTLLSSPL ENSBTAP00000018737/1-1180 LQFAVTVFVA SWTEKK-RRK SATTLGVLNI VFSPFMLVFI VFSTLLSSPL bmy_04199T0/1-1065 LQFAVTVLLA SWTEKK-RRK STTTLCVLNI VFSPFMLVFI VFSTLLSSPL ENSTTRP00000005192/1-1157 LQFAV-ILLA SWTGEK-RRN TTYGTHV--- --SPVSLI-- -FSALL-SLL 601 650 ENSP00000317396/1-938 LPLFTLPVFL VGFPRPIQSW PGAAGTTACV CADTVYYYQM VPRLTAVLQT ENSBTAP00000018737/1-1180 LPLFTLPLFL VGFPRPIQSW PGVVGTTACV CADTVYYCQM VPGLTTALQS bmy_04199T0/1-1065 LPLFTLPLFL VGFPRPIQSW PGVVGTTACV CADTVYYYQM VPSLNTALQS ENSTTRP00000005192/1-1157 LPL-SPP--L VG-PRP-QSW PGVVGTT-CV CADTVYYYQM VPSLNTALQS 651 700 ENSP00000317396/1-938 AMAAGSLGLL LPGSHYLGRF QDRLMWIMIL ECGYTYCSIN IKGLELQETS ENSBTAP00000018737/1-1180 AMAAGSLGLL LPGSHYLGRF QDRLIWIMIL ECGYTYCCVN IKGLELQETS bmy_04199T0/1-1065 AMAAGSLGLL LPGSHYLGRF QDRLIWIMIL ECGYTYCCVN IKGLELQETS ENSTTRP00000005192/1-1157 AMAAGSLGLL LPGSHYLGRF QDRLIWIMIL ECGYTYCCIN IKGLELQETS 701 750 ENSP00000317396/1-938 CHTAEARRVD EVFEDAFEQ- EYTRVCSLNE HFGNVLTPCT VLPVKLYSDA ENSBTAP00000018737/1-1180 CHTAEARRVD EVFESAFEQE EYVKLCSINE HFGNVLTPCT VLPVKLYSDA bmy_04199T0/1-1065 CHTAEARRVD EVFEGAFEQE EYARVCSINE HFGNVLTPCT VLPVKLYSDA ENSTTRP00000005192/1-1157 CHTAEARRVD EVFEGAFEQE EYARVCSINE HFGNVLTPCT VLPVKLYSDA 751 800 ENSP00000317396/1-938 RNVLSGIIDS HENLKEFKGD LIKVLVWILV QYCSKRPGMK ENVHNTENKG ENSBTAP00000018737/1-1180 RNVLSGIIDS HDNLKEFKCD LVKVLVWILV QYCSRRPSML ENVHKTENKG bmy_04199T0/1-1065 RNVLSGIIDS HDNLKEFKGD LVKVLVWILL QYCSRRSNVQ ENVHKTENKG ENSTTRP00000005192/1-1157 RNVLSGIIDS HDNLKEFKGD LVKVLVWILL QYCSRRSNMQ ENVHKTENKG 801 850 ENSP00000317396/1-938 KAPL-MLPAL NTLPPPKSPE DIDSLNSETF NDWSDDNIFD DEPTIKKVIE ENSBTAP00000018737/1-1180 KASLIILPAL NTEPQTESPE DTDSLNSENL DDWSDD-VFG EEPTIKKGKD bmy_04199T0/1-1065 KASLIILPAL NTSPQTESPE DTDSLNSENL DDWSDD-VFG EEPTIKKGKE ENSTTRP00000005192/1-1157 KASLIILPPL NTSPQTESPE DTDSLNSENL DDWSDD-VFG EEPTIKKGKE 851 900 ENSP00000317396/1-938 EKHQLKDLPG TNLFIPGSVE SQRVGDHSTG TVPENDLYKA VLLGYPAVDK ENSBTAP00000018737/1-1180 EKDQLKVLPG INLPIPGSVE SQNVESHSTN T--EKSLYQA VALGYPAIDK bmy_04199T0/1-1065 EKDQLKVLPG INLPIPGSVE SQRVGKHSAG TVTENSLYQA VALGYPATDK ENSTTRP00000005192/1-1157 EKDQLKVLPG INLPIPGSVE SQGVGKHSTG TVTENSLYQA VALGYPATDK 901 950 ENSP00000317396/1-938 GKQEDMPYIP LMEFSCSHSH LVCLPAEWRT SCMPSSKMKE MSSLFPEDWY ENSBTAP00000018737/1-1180 GKQEAMAFIP LMEFSCSHSH LLSLPEEWMS NCLPNSKMKE MSSLFPEDWY bmy_04199T0/1-1065 GKQEAMAYIP LMEFSCSHSH LLSLPEEWIS NCLPNSKVKE MSSLFPEDWY ENSTTRP00000005192/1-1157 GKQEAMAYIP LMEFSCSHSH LLSLPEEWIS NCLPNSKVKE MSSLFPEDWY 951 1000 ENSP00000317396/1-938 QFVLRQLECY HSEEKASNVL EEIAKDKVLK DFYVHTVMTC YFSLFGIDNM ENSBTAP00000018737/1-1180 QFILRQLKCF PSKENASNVV EEIAKDRVLK DFYVHAVMTC YFSLFGVDNM bmy_04199T0/1-1065 HFVLRQLECF HSEENASNVV EEIAKDRILK DFYVHAVMTC YFSLFGVDNM ENSTTRP00000005192/1-1157 HFVLRQLECF HSEENASNVV EEIAKDKVLK DFYVHAVMTC YFSLFGVDNM 1001 1050 ENSP00000317396/1-938 APSPGHILRV YGGVLPWSVA LDWLTEKPEL FQLALKAFRY TLKLMIDKAS ENSBTAP00000018737/1-1180 IPSPGHILRV YSGVLPWSLA LDWLTEKPDL FQLALKAFRY TLKLMIDKAS bmy_04199T0/1-1065 IPSPGHILRV YSGVFPWSLA LDWLTEKPEL FQLALKAFRY TLKLMIDKAS ENSTTRP00000005192/1-1157 IPSPGHILRV YSGVFPWSLA LDWLTEKPEL FQLALKAFRY TLKLMIDKAS 1051 1100 ENSP00000317396/1-938 LGPIEDFREL IKYLEEYERD WYIGLVSDEK WKEAILQEKP YLFSLGYDSN ENSBTAP00000018737/1-1180 LGPIEDFKEL INCLEEYESD WYIGLVSDEK WKEAVLQEKP YLFSLGYDPN bmy_04199T0/1-1065 LGPIEDFKEL TNCLEEYESD WYIGLVSDEK WKEAILQEKP YLFSLGYDPN ENSTTRP00000005192/1-1157 LGPIEDFKEL TNCLEEYESD WYIGLVSDEK WKEAILQEKP YLFSLGYDPN 1101 1150 ENSP00000317396/1-938 MGIYTGRVLS LQELLIQVGK LNPEAVRGQW ANLSWELLYA TNDDEERYSI ENSBTAP00000018737/1-1180 MGVYTGRVLT LQELLIHVGK LNAEAVRGQW ANLSWELLYA TNDDEERYSI bmy_04199T0/1-1065 M--------- ---------- -----VRLKM CS-------- ---------- ENSTTRP00000005192/1-1157 MGVYTGRVLT LQELLIQVGK LNAEAVRGQW ANLSWELLYA TNDDEERYSI 1151 1200 ENSP00000317396/1-938 QAHPLLLRNL TVQAAEPPLG YPIYSSKPLH IHLY ENSBTAP00000018737/1-1180 QAHPLLLRNL TIQAADPPLG YPIYSSKPLH IHLV bmy_04199T0/1-1065 ---------- ---------- ---------- ---- ENSTTRP00000005192/1-1157 QAHPLLLRNL TVQAADPPLG YPIYSSKPLH IHLF