KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:28 2014 Check: 00 .. Name: ENSTTRP00000002924/1-1397 Len: 1483 Check: 847 Weight: 1.00 Name: ENSP00000161863/1-1430 Len: 1483 Check: 3017 Weight: 1.00 Name: ENSBTAP00000018745/1-1429 Len: 1483 Check: 1051 Weight: 1.00 Name: bmy_21095T0/1-1013 Len: 1483 Check: 6475 Weight: 1.00 Name: BACU014970/1-1430 Len: 1483 Check: 3964 Weight: 1.00 // 1 50 ENSTTRP00000002924/1-1397 ---------- ---------- ---------- ---------M SRPSSVSHRP ENSP00000161863/1-1430 ---------- ---------- ---------- ---------M SRPSSVSPRQ ENSBTAP00000018745/1-1429 ---------- ---------- ---------- ---------M SRPSSVSPRP bmy_21095T0/1-1013 IACGAVWPRQ RPPRPTFLVV GRQPAGLAAL PRGEHLLRAM SRPSSVSPRP BACU014970/1-1430 ---------- ---------- ---------- ---------M SRPSSVSPRP 51 100 ENSTTRP00000002924/1-1397 SAPGGGGGSG QALCGPAGGG RAKGLKDIRI DEEVKIAVNI ALERFRYGDQ ENSP00000161863/1-1430 PAPGGGGGGG PSPCGPGGGG RAKGLKDIRI DEEVKIAVNI ALERFRYGDQ ENSBTAP00000018745/1-1429 PAPGGGGG-G PAPCCPGGGG RAKGLKDIRI DEEVKIAVNI ALERFRYGDQ bmy_21095T0/1-1013 SAPGRGGGSC PAPCGPAGGG RAKGLKDIRI DEEVKIAVNI ALERFRYGDQ BACU014970/1-1430 SAPGRGGGSC PAPCGLAGGG RAKGLKDIRI DEEVKIAVNI ALERFRYGDQ 101 150 ENSTTRP00000002924/1-1397 KEMEFPSSLT STERAFIHRL SQSLGLVSKS KGKGASRYLT VKKKDGSETA ENSP00000161863/1-1430 REMEFPSSLT STERAFIHRL SQSLGLVSKS KGKGANRYLT VKKKDGSETA ENSBTAP00000018745/1-1429 REMEFPSSLT STERAFIHRL SQSLGLVSKS KGKGANRYLT VKKKDGSETA bmy_21095T0/1-1013 REMEFPSSLT STERAFIHRL SQSLGLVSKS KGKGASRYLT VKKKDGSETA BACU014970/1-1430 REMEFPSSLT STERAFIHRL SQSLGLVSKS KGKGASRYLT VKKKDGSETA 151 200 ENSTTRP00000002924/1-1397 HAMMTCNLTH NTKHAVRSLI QRFPVTSKER TELLPKTERG NVFAVEAEIR ENSP00000161863/1-1430 HAMMTCNLTH NTKHAVRSLI QRFPVTNKER TELLPKTERG NVFAVEAENR ENSBTAP00000018745/1-1429 HAMMTCNLTH NTKHAVRSLI QRFPVTNKER TELLPKTERG NVFAVEAENR bmy_21095T0/1-1013 HAMMTCNLTH NTKHAVRSLI QRFPVTNKER TELLPKTERG NVFAVEAENR BACU014970/1-1430 HAMMTCNLTH NTKHAVRSLI QRFPVTNKER TELLPKTERG NVFAVEAENR 201 250 ENSTTRP00000002924/1-1397 EMSKTSGRLN SGISQIPVKR GESEFDSFRQ SLPVFEKQEE IVKIIKENKV ENSP00000161863/1-1430 EMSKTSGRLN NGIPQIPVKR GESEFDSFRQ SLPVFEKQEE IVKIIKENKV ENSBTAP00000018745/1-1429 EMSKTSGRLN NGIPQIPVKR GESEFDSFRQ SLPVFEKQEE IVKIIKENKV bmy_21095T0/1-1013 EMSKTSGRLN NGIPQIPVKR GESEFDSFRQ SLPVFEKQEE IVKIIKENKV BACU014970/1-1430 EMSKTSGRLN NGIPQIPVKR GESEFDSFRQ SLPVFEKQEE IVKIIKENKV 251 300 ENSTTRP00000002924/1-1397 VLIVGETGSG KTTQIPQFLL DDCFKNGIPC RIFCTQPRRL AAIAVAERVA ENSP00000161863/1-1430 VLIVGETGSG KTTQIPQFLL DDCFKNGIPC RIFCTQPRRL AAIAVAERVA ENSBTAP00000018745/1-1429 VLIVGETGSG KTTQIPQFLL DDCFKNGIPC RIFCTQPRRL AAIAVAERVA bmy_21095T0/1-1013 VLIVGETGSG KTTQI----- -------CNC ELY------- ---------- BACU014970/1-1430 VLIVGETGSG KTTQIPQFLL DDCFKNGIPC RIFCTQPRRL AAIAVAERVA 301 350 ENSTTRP00000002924/1-1397 AERRERIGQT IGYQIRLESR VSPKTLLTFC TNGVLLRTLM AGDSSLSTVT ENSP00000161863/1-1430 AERRERIGQT IGYQIRLESR VSPKTLLTFC TNGVLLRTLM AGDSTLSTVT ENSBTAP00000018745/1-1429 AERRERIGQT IGYQIRLESR VSPKTLLTFC TNGVLLRTLM AGDSTLSTVT bmy_21095T0/1-1013 ---------- ----FDFLKR VSPKTLLTFC TNGVLLRTLM AGDSSLSTVT BACU014970/1-1430 AERRERIGQT IGYQIRLESR VSPKTLLTFC TNGVLLRTLM AGDSSLSTVT 351 400 ENSTTRP00000002924/1-1397 HVIVDEVHER DRFSDFLLTK LRDLLQKYPT LKLVLSSAAL DVNLFMRYFG ENSP00000161863/1-1430 HVIVDEVHER DRFSDFLLTK LRDLLQKHPT LKLILSSAAL DVNLFIRYFG ENSBTAP00000018745/1-1429 HVIVDEVHER DRFSDFLLTK LRDLLQKHPT LKLILSSAAL DVNLFIRYFG bmy_21095T0/1-1013 HVIVDEVHER DRFSDFLLTK LRDLLQKHPT LKLILSSAAL DVNLFMRYFG BACU014970/1-1430 HVIVDEVHER DRFSDFLLTK LRDLLQKHPT LKLILSSAAL DVNLFMRYFG 401 450 ENSTTRP00000002924/1-1397 SCPVTYIQGR PFEVKEMFLE DILRTTGYTN KEMLKYKKEK QREERQQTTL ENSP00000161863/1-1430 SCPVIYIQGR PFEVKEMFLE DILRTTGYTN KEMLKYKKEK QQEEKQQTTL ENSBTAP00000018745/1-1429 SCPVIYIQGR PFEVKEMFLE DILRTTGYTN KEMLKYKKEK QREEKQQTTL bmy_21095T0/1-1013 SCPVTYIQGR PFEVKEMFLE DILRTTGYTN KEMLKYKKEK QREERQQTTL BACU014970/1-1430 SCPVTYIQGR PFEVKEMFLE DILRTTGYTN KEMLKYKKEK QREERQQTTL 451 500 ENSTTRP00000002924/1-1397 TEWYSAQENT FKPESQRQRA VPNVTEENDL LDDGGDAVFS QL-------- ENSP00000161863/1-1430 TEWYSAQENS FKPESQRQRT VLNVTDEYDL LDDGGDAVFS QLTEKDVNCL ENSBTAP00000018745/1-1429 TEWYSAQENS FKPESQRQRA IPNVTEEYDL LDDGGDAVFS QLTEKDVNCL bmy_21095T0/1-1013 TEWYSAQENT FKPESQRQRA VPNVTEEYDL LDDGGDAVFS QLTEKDVNCL BACU014970/1-1430 TEWYSAQENT FKPESQRQRA VPNVTEEYDL LDDGGDAVFS QLTEKDVNCL 501 550 ENSTTRP00000002924/1-1397 ---------- --------KN VNNFIIIHSM ---ENFSMDY RHSETS-TAL ENSP00000161863/1-1430 EPWLIKEMDA CLSDIWLHKD IDAFAQVFHL ILTENVSVDY RHSETSATAL ENSBTAP00000018745/1-1429 EPWLIKEMDA CLSDIWLHKD VDAFAQVFHL ILTENVSVDY RHSETSATAL bmy_21095T0/1-1013 EPWLIKEMDA CLSDIWLHKD VDAFAQVFHL ILTENVSVDY RHSETSATAL BACU014970/1-1430 EPWLIKEMDA CLSDIWLHKD VDAFAQVFHL ILTENVSVDY RHSETSATAL 551 600 ENSTTRP00000002924/1-1397 MVAAXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000161863/1-1430 MVAAGRGFAS QVEQLISMGA NVHSKASNGW MALDWAKHFG QTEIVDLLES ENSBTAP00000018745/1-1429 MVAAGRGFSS QVEQLISMGA NVHSKASNGW MALDWAKHFG QTEIVDLLES bmy_21095T0/1-1013 MVAAGRGFSS QVEQLISMGA NVHIKASNGW MALDWAKHFG QTEIVDLLES BACU014970/1-1430 MVAAGRGFSS QVEQLISMGA NVHIKASNGW MALDWAKHFG QTEIVDLLES 601 650 ENSTTRP00000002924/1-1397 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000161863/1-1430 YSATLEFGNL DESSLVQTNG SDLSAEDREL LKAYHHSFDD EKVDLDLIMH ENSBTAP00000018745/1-1429 YSASLEFGNL DESSLVQTSG SDLSAEDREL LKAYHHSFDD EKVDLDLIMH bmy_21095T0/1-1013 YSASLEFGNL DESSLVQTNG SDLSAEDREL LKAYHHSFDD EKVDLDLIMH BACU014970/1-1430 YSASLEFGNL DESSLVQTNG SDLSAEDREL LKAYHHSFDD EKVDLDLIMH 651 700 ENSTTRP00000002924/1-1397 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000161863/1-1430 LLYNICHSCD AGAVLIFLPG YDEIVGLRDR ILFDDKRFAD STHRYQVFML ENSBTAP00000018745/1-1429 LLYNICHSCE AGAILIFLPG YDEIVGLRDR ILFDDKRFAE NAHRYQVFML bmy_21095T0/1-1013 LLYNICHSCD SGAILIFLPG YDEIVGLRDR ILFDDRRFAD NNHRYQVFML BACU014970/1-1430 LLYNICHSCD SGAILIFLPG YDEIVGLRDR ILFDDRRFAD NTHRYQVFML 701 750 ENSTTRP00000002924/1-1397 XSNMQTSDQK KILKN--AGV RKIILSTNIA ETSITVNDVV FVIDSGKVKE ENSP00000161863/1-1430 HSNMQTSDQK KVLKNPPAGV RKIILSTNIA ETSITVNDVV FVIDSGKVKE ENSBTAP00000018745/1-1429 HSNMQTSDQK KVLKNPPAGV RKIILSTNIA ETSITVNDVV FVIDSGKVKE bmy_21095T0/1-1013 HSNMQTSDQK KVLKNPPAGV RKIILSTNIA ETSITVNDVV FVIDSGKVKE BACU014970/1-1430 HSNMQTSDQK KVLKNPPAGV RKIILSTNIA ETSITVNDVV FVIDSGKVKE 751 800 ENSTTRP00000002924/1-1397 ---------- -----SFDAL NFVTMLKMVW ISKASAIQRK GXXXXXXXXX ENSP00000161863/1-1430 ---------- ----KSFDAL NFVTMLKMVW ISKASAIQRK GRAGRCRPGI ENSBTAP00000018745/1-1429 ---------- ----KSFDAL NFVTMLKMVW ISKASAIQRK GRAGRCRPGI bmy_21095T0/1-1013 YLLCINMKVI LILQKSFDAL NFVTMLKMVW ISKASAIQRK GRAGRCRPGI BACU014970/1-1430 ---------- ----KSFDAL NFVTMLKMVW ISKASAIQRK GRAGRGRPGI 801 850 ENSTTRP00000002924/1-1397 XXXXXXXXXX XXXXXXXXXX XXXXXXXELC LHTKLLAPVN CPIADFLMKA ENSP00000161863/1-1430 CFRLFSRLRF QNMLEFQTPE LLRMPLQELC LHTKLLAPVN CPIADFLMKA ENSBTAP00000018745/1-1429 CFRLFSRLRF QNMLEFQTPE LLRMPLQELC LHTKLLAPVN CAIADFLMKA bmy_21095T0/1-1013 CFRLFSRLRF QNMLEFQTPE LLRMPLQELC LHTKLLAPVN CPIADFLMKA BACU014970/1-1430 CFRLFSRLRF QNMLEFQTPE LLRMPLQELC LHTKLLAPVN CPIADFLMKA 851 900 ENSTTRP00000002924/1-1397 PEPPPTLIVR NAVHMLKTID AMDAWEDLTE LGYHLADLPV EPHLGKMVLC ENSP00000161863/1-1430 PEPPPALIVR NAVQMLKTID AMDTWEDLTE LGYHLADLPV EPHLGKMVLC ENSBTAP00000018745/1-1429 PEPPPALIVR NAVQMLKTID AMDAWEDLTE LGYHLADLPV EPHLGKMVLC bmy_21095T0/1-1013 PEPPPALIVR NAVHMLKTID AMDAWEDLTE LGYHLADLPV EPHLGKMVLC BACU014970/1-1430 PEPPPALIVR NAVHMLKTID AMDAWEDLTE LGYHLADLPV EPHLGKMVLC 901 950 ENSTTRP00000002924/1-1397 AVVLKCLDPI LTIACTLAYR DPFVLPTQAS QKRAAMLCRK RFTAGTFSDH ENSP00000161863/1-1430 AVVLKCLDPI LTIACTLAYR DPFVLPTQAS QKRAAMLCRK RFTAGAFSDH ENSBTAP00000018745/1-1429 AVVLKCLDPI LTIACTLAYR DPFVLPTQAS QKRAAMLCRK RFTAGTFSDH bmy_21095T0/1-1013 AVVLKCLDPI LTIACTLAYR DPFVLPTQAS QKRAAMLCRK RFTAGTFSDH BACU014970/1-1430 AVVLKCLDPI LTIACTLAYR DPFVLPTQAS QKRAAMLCRK RFTAGTFSDH 951 1000 ENSTTRP00000002924/1-1397 MALLRAFQAW QKARSDGWER AFCEKNFLSQ ATLEIIIGMR TQLLGQLRAS ENSP00000161863/1-1430 MALLRAFQAW QKARSDGWER AFCEKNFLSQ ATMEIIIGMR TQLLGQLRAS ENSBTAP00000018745/1-1429 MALLRAFQAW QKARSDGWER AFCEKNFLSQ ATMEIIIGMR TQLLGQLRAS bmy_21095T0/1-1013 MALLRAFQ-- ---------- ---------- ---------- ---------- BACU014970/1-1430 MALLRAFQAW QKARSDGWER AFCEKNFLSQ ATMEIIIGMR TQLLGQLRAS 1001 1050 ENSTTRP00000002924/1-1397 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXHVD RENVVLTGPK ENSP00000161863/1-1430 GFVRARGGGD IRDVNTNSEN WAVVKAALVA GMYPNLVHVD RENLVLTGPK ENSBTAP00000018745/1-1429 GFVRARGGGD IRDVNTNSEN WAVVKAALVA GMYPHLVHVD RENVVLAGPK bmy_21095T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU014970/1-1430 GFVRARGGGD IRDVNTNSEN WAVVKAALVA GMYPHLVHVD RENVVLTGPK 1051 1100 ENSTTRP00000002924/1-1397 EKKVRFHPTS VLSQSHYKKI PPANGQAAAI QALPTDWLIY DEMTRAHRIA ENSP00000161863/1-1430 EKKVRFHPAS VLSQPQYKKI PPANGQAAAI KALPTDWLIY DEMTRAHRIA ENSBTAP00000018745/1-1429 EKKVRFHPTS VLSQPQYKKI PPANGQTAAI QALPTDWLIY DEMTRAHRIA bmy_21095T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU014970/1-1430 EKKVRFHPTS VLSQPQYKKI PPANGQAAAI QALPTDWLIY DEMTRAHRIA 1101 1150 ENSTTRP00000002924/1-1397 NIRCCSAVTP VTVLIFCGPA RLASNALQEL SSFRXXXXXX XXXXXXXXXX ENSP00000161863/1-1430 NIRCCSAVTP VTILVFCGPA RLASNALQEP SSFRVDGIPN DSSDSEMEDK ENSBTAP00000018745/1-1429 NIRCCSAVTP VTVLVFCGPA RLASNALQEP SSFRADGIPN DSSDSEMEDR bmy_21095T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU014970/1-1430 NIRCCSAVTP VTVLIFCGPA RLASNALQEP SSFRADGIPN DSSDSEMEDR 1151 1200 ENSTTRP00000002924/1-1397 XXXXXXXXXX XXXXXXXXXX XAASLLLQLR QKWHSLFLRR MRAPSKPWSQ ENSP00000161863/1-1430 TTANLAALKL DEWLHFTLEP EAASLLLQLR QKWHSLFLRR MRAPSKPWSQ ENSBTAP00000018745/1-1429 TTANLATLKL DEWLSFKLEP EAASLLLQLR QKWHSLFLRR MRAPSKPWSQ bmy_21095T0/1-1013 ---------- ---------- -AATLLLQLR QKWHSLFLRR MRAPSKPWSQ BACU014970/1-1430 TTANLAALKL DEWLNFKLEP EAASLLLQLR KKWHSLFLRR MRAPSKPWSQ 1201 1250 ENSTTRP00000002924/1-1397 VDDATIRAII AVLSTEEQSA GLQQPSGIGQ RPRPMSSEEL PLASSWRSNN ENSP00000161863/1-1430 VDEATIRAII AVLSTEEQSA GLQQPSGIGQ RPRPMSSEEL PLASSWRSNN ENSBTAP00000018745/1-1429 VDEATIRAII AVLSTEEQSA GLQQPSGIGQ RPRPMSSEEL PLASSWRSNN bmy_21095T0/1-1013 VDEATIRAII AVLSTEEQSA GLQQPSGIGQ RPRPMSSEEL PLASSWRSNN BACU014970/1-1430 VDEATIRAII AVLSTEEQSA GLQQPSGIGQ RPRPMSSEEL PLASSWRSNN 1251 1300 ENSTTRP00000002924/1-1397 SRKISADIEF SDESTTAEXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000161863/1-1430 SRKSSADTEF SDECTTAERV LMKSPSPALH PPQKYKDRGI LHPKRGTEDR ENSBTAP00000018745/1-1429 SRKSSADTEF SDESTTAERV LMKSPAPVLH QPQKYKDRGI LHPKRSTEDR bmy_21095T0/1-1013 SRKISADTEF SAESTTAER- ---------- ---------- ---------- BACU014970/1-1430 SRKISADTEF SAESTTAERV LMESPSPALH PPQKYKDRGI LHPKRSTDDR 1301 1350 ENSTTRP00000002924/1-1397 XXXXXXXXXX XXXXXXXXXX XXXXXXXXGS KSPSPRPNMP IRYFIMKSSN ENSP00000161863/1-1430 SDQSSLKSTD SSSYPSPCAS PSPPSSGKGS KSPSPRPNMP VRYFIMKSSN ENSBTAP00000018745/1-1429 SDQSSVKSTD SSNYPSPCAS PSPPSSAKGS KSPSPKPNMP IRYFIMKSSN bmy_21095T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU014970/1-1430 SDQSSVKSTD SNSYPSPCAS PSSPSSGKGS KSPSPRPNMP IRYFIMKSSN 1351 1400 ENSTTRP00000002924/1-1397 LRNLEISQQK GIWSTTSSNE RKLNRAFWES SMVYLIFSVQ GSGHFQGFSR ENSP00000161863/1-1430 LRNLEISQQK GIWSTTPSNE RKLNRAFWES SIVYLVFSVQ GSGHFQGFSR ENSBTAP00000018745/1-1429 LRNLEISQQK GIWSTTPSNE RKLNRAFWES SMVYLVFSVQ GSGHFQGFSR bmy_21095T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU014970/1-1430 LRNLEISQQK GIWSTTPSNE QKLNRAFWES SMVYLVFSVQ GSGHFQGFSR 1401 1450 ENSTTRP00000002924/1-1397 MSSEIGREKS QDWGSAGLGG VFKVEWIRKE SLPFQFAHHL LNPWNDNKKV ENSP00000161863/1-1430 MSSEIGREKS QDWGSAGLGG VFKVEWIRKE SLPFQFAHHL LNPWNDNKKV ENSBTAP00000018745/1-1429 MSSEIGREKS QDWGSAGLGG VFKVEWIRKE SLPFQFAHHL LNPWNDNKKV bmy_21095T0/1-1013 ---------- ---------- ---------- ---------- ---------- BACU014970/1-1430 MSSEIGREKS QDWGSAGLGG VFKVEWIRKE SLPFQFAHHL LNPWNDNKKV 1451 1500 ENSTTRP00000002924/1-1397 QISRDGQELE PQVGEQLLQL WERLSLGEKT TTD ENSP00000161863/1-1430 QISRDGQELE PLVGEQLLQL WERLPLGEKN TTD ENSBTAP00000018745/1-1429 QISRDGQELE PQVGEQLLQL WERLPLGEKT TTD bmy_21095T0/1-1013 ---------- ---------- ---------- --- BACU014970/1-1430 QISRDGQELE PQVGEQLLQL WERLSLGEKT TTD