KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:30 2014 Check: 00 .. Name: ENSP00000324510/1-1187 Len: 1359 Check: 2969 Weight: 1.00 Name: bmy_01910T0/1-697 Len: 1359 Check: 2723 Weight: 1.00 Name: BACU009233/1-1197 Len: 1359 Check: 6751 Weight: 1.00 Name: ENSTTRP00000011353/1-1162 Len: 1359 Check: 1504 Weight: 1.00 Name: ENSBTAP00000018748/1-1155 Len: 1359 Check: 5141 Weight: 1.00 // 1 50 ENSP00000324510/1-1187 MRPRGAAFAA GPPGDLHLGT AIGFAGA-I- ---------- ---WRSRS-- bmy_01910T0/1-697 ---------- ---------- --------M- ---------- ---W------ BACU009233/1-1197 ----MASLPP QHLAHNGLGE GRTCLTCRCS RGAGAERRRF AATWRPSAGR ENSTTRP00000011353/1-1162 ----RPIFVM GTLGDLQGTA AVLCAGEHC- ---------- ---VQSQL-- ENSBTAP00000018748/1-1155 ---------- ---------- ---------- ---------- -------S-- 51 100 ENSP00000324510/1-1187 ---------- -PAMSTLLDI KSSVLRQVQV CPSFRRRTEQ ---------- bmy_01910T0/1-697 ---------- ---------V QA-------- -----RRSV- ---------- BACU009233/1-1197 GSAAATSEQA EPGKFEPPLF HPNVYPSGTV CLSILEEDKD WRPAITIKQI ENSTTRP00000011353/1-1162 ---------- -PTMSTLLEI KSSVLRQVQV CPSFRRRTEE ---------- ENSBTAP00000018748/1-1155 ---------- -PAMSTLLEI KSSVLRQVQV CPSFRRRTEE ---------- 101 150 ENSP00000324510/1-1187 ---------D PGSASADPQE PATGAWKPGD GVEFFAHMRL MLKKGEGRQG bmy_01910T0/1-697 ---------- ---------- ----YW---- ---------- ---------- BACU009233/1-1197 LLGIQELLNE PNIQDPAQAE AYTIYWKPGD GVEFFAQMRL ILKKGEGRQG ENSTTRP00000011353/1-1162 ---------E PASSSTEVQE PAAGAWKPGD GVEFFAQMRL ILKKGESRQG ENSBTAP00000018748/1-1155 ---------E PASGSADPPE PTAGAWKPGD GVEFFAQMRL ILKKGEGRQG 151 200 ENSP00000324510/1-1187 LPCLEVPLRS GSPAPPEPVD PSLGLRALAP EEVEMLYEEA LYTVLYRAGT bmy_01910T0/1-697 ---------- ---------- ---------- ---------- ---------- BACU009233/1-1197 LPCPEVLLRS SSPAPTEPVD TSRGLRALTQ EEVEMLYEEA LYTVLYRAGT ENSTTRP00000011353/1-1162 LPCPEVLLRS SSPAPTEPVD PSRGLRALTQ EEVEMLYEEA LYTVLYRAGT ENSBTAP00000018748/1-1155 LPCPEVLLRS SSPAPAEPVD PSRGLRTLSQ EEVDMLYEEA LYTVLHRAGT 201 250 ENSP00000324510/1-1187 MGPDQVDDEE ALLSYLQQVF GTSLEEHTEA IERVRKAKAP TYALKVSVMR bmy_01910T0/1-697 ---------- ---------- ---------- ---------- ---------- BACU009233/1-1197 MGPDQVDDQE VLLSYLQQVF GTSPEEHAEA MERVKKAKAP TYALKVSVMR ENSTTRP00000011353/1-1162 MGPDQVDDQG ALLSYLQQVF GTSPEQHAEA MERVKKAKAP TYALKVSVMR ENSBTAP00000018748/1-1155 MGPDQVDDEE ALLSYLQQVF GTGPEEHAVA VERVKKAKAP TYALKVSVMR 251 300 ENSP00000324510/1-1187 AKNLLAKDPN GFSDPYCMLG ILPASDATRE PRAQKEQRFG FRKGSKRGGP bmy_01910T0/1-697 ---------- ---------- ---------- ---------- ---------- BACU009233/1-1197 AKNLLAKDPN GFSDPYCMLG ILPASGTLRE PGPHKEQRFS FRKGSKRGGP ENSTTRP00000011353/1-1162 AKNLLAKDPN GFSDPYCMLG ILPASGTLRE PGPHKEQRFS FRKGSKRGGP ENSBTAP00000018748/1-1155 AKNLLAKDPN GFSDPYCMLG ILPASGAVRE PSPHKEQRFS FRKGSKRGGP 301 350 ENSP00000324510/1-1187 LPAKCIQVTE VKSSTLNPVW KEHFLFEIED VSTDQLHLDI W--------- bmy_01910T0/1-697 ---------- ---------- ---------- ---------- ---------- BACU009233/1-1197 LPAKCIQVTE VKSSTLNPVW KEHFLFEIED VSTDQLHLDI WYRPLCPAGQ ENSTTRP00000011353/1-1162 LPAKCIQVTE VKSSTLNPVW KEHFLFEIED VSTDQLHLDI W--------- ENSBTAP00000018748/1-1155 LPAKCIQVTE VKSSTLNPVW KEHFLFEIED VGTDQLHLDI W--------- 351 400 ENSP00000324510/1-1187 --DHDDDVSL VEACRKLNEV IGLKGMGRYF KQIVKSARAN GTAGPTEDHT bmy_01910T0/1-697 ---------- ---------- ---------- ---------- ---------- BACU009233/1-1197 GMDHDDDVSL VEACRKLNEV IGLKGMSRYF KQIVKSARAN GTAGPTEDHT ENSTTRP00000011353/1-1162 --DHDDDVSL VEACRKLNEV IGLKGMSRYF KQIVKSARTN GTAGPTEDHT ENSBTAP00000018748/1-1155 --DHDDDVSL VEACRKLNEV IGLKGVSRYF KQIVKSARAN GTAGPTEDHT 401 450 ENSP00000324510/1-1187 DDFLGCLNIP VREVPVAGVD RWFKLEPRSS ASRVQGHCHL VLKLITTQRD bmy_01910T0/1-697 ---------- ---------- ---------- ---------- ---------- BACU009233/1-1197 DDFLGCLNIP IREVPVAGED RWFKLEPRSS ASRVQGDCQL VLKLITTQ-- ENSTTRP00000011353/1-1162 DDFLGCLNIP IRALP----- -WL------- --RVQGSGGL FL------RD ENSBTAP00000018748/1-1155 DDFLGCLNIP VREVPVAGED RWFKLEPRSS ASRVQGDCQL ILKLITTQRD 451 500 ENSP00000324510/1-1187 TAMSQRGRSG FLSHLLLLSH LLRLEHSAEE PNSSSWRGEL STPAATILCL bmy_01910T0/1-697 ---------- ---------- ---------- ---------- ---------- BACU009233/1-1197 ---------- ---------- ---------- PNSSSWRGEL SGPAATVLCL ENSTTRP00000011353/1-1162 TSMSQRGRSV FLSYLLLLSR LLQFEHQAEE PNSSSWRGEL SGPAATVLCL ENSBTAP00000018748/1-1155 TNMSQRGRSG FLSYLLLLNR LLQFEHRAEE PNSSSWRGEL SGPAATVLCL 501 550 ENSP00000324510/1-1187 HGAQSNLSPL QLAVLHWQVS SRHHQTCTLD YSYLLGLLED MQAHWEEAPS bmy_01910T0/1-697 ---------- ---------- ---------- ---------- ---------- BACU009233/1-1197 HGAQSNLSAL QLAVLHWQVS SRHHQTRTLD YGYLLGLLED MQAHWEEAAS ENSTTRP00000011353/1-1162 HGAQSNLSAL QLAVLHWQVS SRHHQTRTLD YGYLLGLLED MQAHWEEAAS ENSBTAP00000018748/1-1155 HGAQSNLSAL QLAVLHWQVS SRHHQTRTLD YGYLLGLLED LQAHWEEAGS 551 600 ENSP00000324510/1-1187 LPQEQEESLA DSLSAFSEFG LQLLRQLRDY FPATNSTAVH RLELLLK--- bmy_01910T0/1-697 ---------- ---------- ---------- ---------- ---------- BACU009233/1-1197 LPQEQEEGLA DSFSAFSEFG LRLLRQLRDY FPATNSTAVY RLELLLKWVQ ENSTTRP00000011353/1-1162 LPQEQEEGLA DSFSAFSEFG LRLLRQLRDY FPATNSTAIY RLELLLK--- ENSBTAP00000018748/1-1155 LPQEQEEGLA DSFSAFSEFG LQLLRQLRDY FPATNSTAVY RLELLLK--- 601 650 ENSP00000324510/1-1187 ---------- ---------- --------CL GKLQLFQPSF EICPFESELN bmy_01910T0/1-697 ---------- ---------- ---------- ---------- ---------- BACU009233/1-1197 PLARGVGVWV GVGDWVGHPQ SAGDGSPRCL GKLQLFQPSF EICPFETELN ENSTTRP00000011353/1-1162 ---------- ---------- --------CL GKLQLFQPSF EICPFETELN ENSBTAP00000018748/1-1155 ---------- ---------- --------CL GKLQLFQPSF EICPFETELN 651 700 ENSP00000324510/1-1187 MDIAAALKRG NREWYDRILN DKSPREQPGP QRLPGLVVLA DAVYDDLQFC bmy_01910T0/1-697 ----ASL--- ---------- ------QPGP QRLAGLVKLA DTVYEDLQSC BACU009233/1-1197 MDIAAAL--- ---------- ------KPGP QRLAGLVKLA DAVYEDLQSC ENSTTRP00000011353/1-1162 MDIAAALKRG NREWFDKLLN SQSPREQPGP QRLAGLVKLA DTVYEDLQSC ENSBTAP00000018748/1-1155 MDIAAALKRG NREWFDKLLN TQSPREQPGP QRLAGLIKLA DTIYEDLQSC 701 750 ENSP00000324510/1-1187 YSVYASLFHS ILNVDVFTLT FRQLERLVAE EAWVLTEELS PKMTLEVASG bmy_01910T0/1-697 YGIYASLFHS IIKIDFFTLT FRQLERLVAE EAWVLTEELS PKMTLEVASG BACU009233/1-1197 YGIYASLFHS IIKIDFFTLT FRQLERLVAE EAWVLTEQLS PKMTLEVASG ENSTTRP00000011353/1-1162 YGIYASLFHS IIKID-FTLT FRQLERLVAE EVWVLTEELS PKMTLEVASG ENSBTAP00000018748/1-1155 YGIYASLFHS IIKVDFFTLT FRQLERLVAE EAWVLTEELS PKMTLEVALG 751 800 ENSP00000324510/1-1187 LFELYLTLAD LQRFWDSIPG RDSRSLALAG IHAPFLPAVK LWFQVLRDQA bmy_01910T0/1-697 LFELYLTLAD IQRFWSSIPG RDSRSLALAG IHAPFLPAVK LWLQVLRNQA BACU009233/1-1197 LFELYLTLAD IQRFWSSIPG RDSRSLALAG IHAPFLPAVK LWLQVLRDQA ENSTTRP00000011353/1-1162 LFELYLTLAD IQCFWSSIPG RDSRSLALAG IHAPFLPAVK LWLQVLRDQA ENSBTAP00000018748/1-1155 LFELYLTLAD IQRFWSSIPG RDSRSLALAG IHAPFLPAVK LWLQVLRDQT 801 850 ENSP00000324510/1-1187 KWRLQGAVDM DTLEPVDASS RHSSSAATAG LCLSHIQELW VRLAWPDPAQ bmy_01910T0/1-697 KWRLQGAVDV DTLEPMDSSS KHSSSAATAS LCFSHMQELW ARLAWPDPAQ BACU009233/1-1197 KWRLQGAVDV DTLEPMDSSS KHSSSAATAS LCFSHMQELW ACLAWPDPAQ ENSTTRP00000011353/1-1162 RWRLQGAVDV DTLEPMDSSS KHSSSAATAS LCFSHIQELW ARLAWPDPAQ ENSBTAP00000018748/1-1155 KWRLQGAVDV DTLEPMDASS KHSSSAATAS LCFSHIQELW ACLAWPDPAQ 851 900 ENSP00000324510/1-1187 AQGLGTQLGQ DVCEATLFYT ELLRKKVDTQ PGAAGEAVSE ALCVVLNNVE bmy_01910T0/1-697 AQGLGTQLSQ DLCEAALFYT ELLRKKVDTQ PGAVGEAVSE PLCVVLNDVE BACU009233/1-1197 AQGLGTQLSQ DLCEAALFYT ELLRKKVDTQ PGAVGEAVSE PLCVVLNDVE ENSTTRP00000011353/1-1162 AQGLGTQLSQ DLCEAALFYT ELLRKKVDTQ PGAAGEAVSE PLCVVLNDVE ENSBTAP00000018748/1-1155 AQTLGTQLSQ DLCEAALFYT ELLRKKVDAQ PGAAGEAVSE PLCVVLNDVE 901 950 ENSP00000324510/1-1187 LVRKAAGQAL KGLAWPEGAT GPEGVLPRPL LSCTQALDDD LQREAHTVTA bmy_01910T0/1-697 LLRKAADQAL RGLVWPEGAP GLEGVLPRPL LSCMQALDED LQREARTVTA BACU009233/1-1197 LLRKAADQAL RGLVWPEGAP GLEGVLPRPL LSCMQALDED LQREARTVTA ENSTTRP00000011353/1-1162 LLRKAAGQAL RGLAWPEGSP GLEGVLPRPL LSCMQALDED LQREARTVTA ENSBTAP00000018748/1-1155 LLRKAAGQAL RGLAWPEGAA GLEGTLPRPL LSCTQALDED LQREARTVTA 951 1000 ENSP00000324510/1-1187 HLTSKMVGDI RKYVQHISLS PDSIQNDEAV APLMKYLD-- ---------- bmy_01910T0/1-697 HLTSKMVGDI RKYVQHISLS PDSIQNEEAM APLXXXXXXX GHGPAPEVPG BACU009233/1-1197 HLTSKMVGDI RKYVQHISLS PDSIQNEEAM APLLKYLD-- ---------- ENSTTRP00000011353/1-1162 HLTSKMVGDI RKYVQHISLS PDSIQNEEAM APLLKYLD-- ---------- ENSBTAP00000018748/1-1155 HLTSKMVGDV RKYVQHVSLS PDSIQNDEAV APLLKYLD-- ---------- 1001 1050 ENSP00000324510/1-1187 ------EKLA ---------- ------LLNA SLVK-GNLSR VLEALWELLL bmy_01910T0/1-697 REAGSAERVT SEGEPEQVWS RAGGAGLAQC PVTDAECPYR VLEALWELLL BACU009233/1-1197 ------EKLA ---------- ------LLNA SLVK-ENLSR VLEALWELLL ENSTTRP00000011353/1-1162 ------EKLA ---------- ------LLNA SLVK-ENLSR VLEALWELLL ENSBTAP00000018748/1-1155 ------EKLA ---------- ------LLNA SLVK-ENLNR VLEALWELLL 1051 1100 ENSP00000324510/1-1187 QAILQALGAN RDVSADFYSR FHFTLEALVS FFHAEGQGLP LESLRDGSYK bmy_01910T0/1-697 QAILQALGAN RDVSADFYGR FHFTLEALVN FFHAEGQGLP LESLRDGSYK BACU009233/1-1197 QAILQALGAN RDVSADFYGR FHFTLE---- ---------- ---------- ENSTTRP00000011353/1-1162 QAILQALGAN RDVSADFYGR FHFTLEALVN FFHAEGQGLP LESLRDGSYK ENSBTAP00000018748/1-1155 QAILQALGAN RDVSADFYGR FHFTLEALVN FFHAEGQGLP LESLRDGSYK 1101 1150 ENSP00000324510/1-1187 ---------- ---------- ---------- ---------- --------RL bmy_01910T0/1-697 VKFGPGASDR GRGRGGHQRP KFEFIHAPHV KWGREELPAS PGASSFLQRL BACU009233/1-1197 ---------- ---------- ---------- ---------- --------RL ENSTTRP00000011353/1-1162 ---------- ---------- ---------- ---------- --------RL ENSBTAP00000018748/1-1155 ---------- ---------- ---------- ---------- --------RL 1151 1200 ENSP00000324510/1-1187 KEELRLHKCS TRECIEQFYL DKLKQRTLEQ NRFGRLSVRC HYEAAEQRLA bmy_01910T0/1-697 EEELRLHQCS TRECIEQYYL DKLKQRSLEH NRFGRLSVRC HYEAAEQRLA BACU009233/1-1197 EEELRLHQCS TRECIEQYYL DKFKQRSLEH NRFGRLSVRC HYEAAEQRLA ENSTTRP00000011353/1-1162 EEELRLHQCS TRECIEQYYL DKLKQRSLEH NRFGRLSVRC HYEAAEQRLV ENSBTAP00000018748/1-1155 EEELRLHQCS TRECIEQYYL DKLKQRSMEH NRFGRLSVRC HYEAAEQRLA 1201 1250 ENSP00000324510/1-1187 VEVLHAADLL PLDANGLSDP FVIVELGPPH LFPLVRSQRT QVKTRTLHPV bmy_01910T0/1-697 VEVLHAADLL PLDANGLSDP FVIVELGPPH LFPLVRSQRT QVKSRTLHPV BACU009233/1-1197 VEVLHAADLL PLDANGLSDP FVIVELGPPH LFPLVRSQRT QVKSRTLHPV ENSTTRP00000011353/1-1162 VEVLHAADLL PLDANGLIDP FVIVELGPPH LFPLVRSQRT QVKSRTLHPV ENSBTAP00000018748/1-1155 VEVLHAADLL PLDANGLSDP FVIVELGPPH LFPLVRSQRT QVKSRTLHPV 1251 1300 ENSP00000324510/1-1187 YDELFYFSVP AEACRRRAAC VLFTVMDHDW LSTNDFAGEA ALGLGGVTGV bmy_01910T0/1-697 YDELFYFSVP AEACRRRGAC VLFTVMDHDW LSTNDFAGEA ALGLGSIGGV BACU009233/1-1197 YDELFYFSVP AEACRRRGAC VLFTVMDHDW LSTNDFAGEA ALGLGSIGGV ENSTTRP00000011353/1-1162 YDELFYFSVP AEACRRRGAC VLFTVMDHDW LSTNDFAGEA ALGLGSIGGV ENSBTAP00000018748/1-1155 YDELFYFSVP AEACRRRGAC VLFTVMDHDW LSTNDFAGEA ALGLGSVGGV 1301 1350 ENSP00000324510/1-1187 ARPQVGGGAR AGQPVTLHLC RPRAQVRSAL RRLEGRTSKE AQEFVKKLKE bmy_01910T0/1-697 ARPQVGGSAR AGQPVTLHLR RPRAQVRSAL RMLEGRNNKE AQEFVKRLKE BACU009233/1-1197 ARPQVGGSAR AGQPVTLHLR RPRAQVRSAL RMLEGRNNKE AQEFVKRLKE ENSTTRP00000011353/1-1162 ARPQVGGSAR AGQPVTLHLR RPRAQVRSAL RMLEGRNNKE AQEFVKRLKE ENSBTAP00000018748/1-1155 ARPQVGGSAR ASQPVTLHLR RPRAQVRSAL RMLEGRPNKE AQEFVKRLRE 1351 1400 ENSP00000324510/1-1187 LEKCMEADP bmy_01910T0/1-697 LEKYMEADP BACU009233/1-1197 LEKYMEADP ENSTTRP00000011353/1-1162 LEKYMEADP ENSBTAP00000018748/1-1155 LEKYMEADP