KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:05:31 2014 Check: 00 .. Name: ENSP00000369981/1-352 Len: 352 Check: 3118 Weight: 1.00 Name: ENSBTAP00000018755/1-352 Len: 352 Check: 3673 Weight: 1.00 Name: bmy_20350T0/1-226 Len: 352 Check: 7569 Weight: 1.00 Name: ENSTTRP00000010711/1-352 Len: 352 Check: 6356 Weight: 1.00 // 1 50 ENSP00000369981/1-352 MSVAGLKKQF HKATQKVSEK VGGAEGTKLD DDFKEMERKV DVTSRAVMEI ENSBTAP00000018755/1-352 MSVAGLKKQF HKATQKVSEK VGGAEGTKLD DDFKEMERKV DVTSRAVMEI bmy_20350T0/1-226 ---MGL---- --LTSKVSEK VGGAEGTKLD DDFKEMER-- ---------- ENSTTRP00000010711/1-352 MSVAGLKKQF HKATQKVSEK VGGAEGTKLD DDFKEMERKV DVTSRAVMEI 51 100 ENSP00000369981/1-352 MTKTIEYLQP NPASRAKLSM INTMSKIRGQ EKGPGYPQAE ALLAEAMLKF ENSBTAP00000018755/1-352 MTKTIEYLQP NPASRAKLSM INTMSKIRGQ EKGPGYPQAE ALLAEAMLKF bmy_20350T0/1-226 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010711/1-352 MTKTIEYLQP NPASRAKLSM INTMSKIXXX XXXXXXXXXX XXXXXXXXXX 101 150 ENSP00000369981/1-352 GRELGDDCNF GPALGEVGEA MRELSEVKDS LDIEVKQNFI DPLQNLHDKD ENSBTAP00000018755/1-352 GRELGDDCNF GPALGEVGEA MRELSEVKDS LDMEVKQNFI DPLQNLHDKD bmy_20350T0/1-226 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010711/1-352 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 151 200 ENSP00000369981/1-352 LREIQHHLKK LEGRRLDFDY KKKRQGKIPD EELRQALEKF DESKEIAESS ENSBTAP00000018755/1-352 LREIQHHLKK LEGRRLDFDY KKKRQGKIPD EELRQALEKF DESKEIAESS bmy_20350T0/1-226 -----HHLKK LEGRRLDFDY KKKRQGKIPD EELRQALEKF DESKEIAESS ENSTTRP00000010711/1-352 XXXXQHHLKK LEGRRLDFDY KKKRQGKIPD EELRQALEKF DESKEIAESS 201 250 ENSP00000369981/1-352 MFNLLEMDIE QVSQLSALVQ AQLEYHKQAV QILQQVTVRL EERIRQASSQ ENSBTAP00000018755/1-352 MFNLLEMDIE QVSQLSALVQ AQLEYHKQAV QILQQVTVRL EERIRQASSQ bmy_20350T0/1-226 MFNLLEMDIE QVSQLSALIQ AQLEYHKQAV QILQQVTVRL EERIRQASSQ ENSTTRP00000010711/1-352 MFNLLEMDIE QVSQLSALIQ AQLEYHKQAV QILQQVTVRL EERIRQASSQ 251 300 ENSP00000369981/1-352 PRREYQPKPR MSLEFPTGDS TQPNGGLSHT GTPKPSGVQM DQPCCRALYD ENSBTAP00000018755/1-352 PRREYQPKPR MSLEFSTGDS TQPNGGLSHT GTPKPAGAPM DQPCCRALYD bmy_20350T0/1-226 PRREYQPKPR MSLEFTTGDS TQPNGGLSHT GTPKPAGAPL DQPCCRALYD ENSTTRP00000010711/1-352 PRREYQPKPR MSLEFTTGDS TQPNGGLSHT STPKPAGAPM DQPCCRALYD 301 350 ENSP00000369981/1-352 FEPENEGELG FKEGDIITLT NQIDENWYEG MLHGHSGFFP INYVEILVAL ENSBTAP00000018755/1-352 FEPENEGELG FKEGDIITLT NQIDENWYEG MLHGQSGFFP INYVEILVAL bmy_20350T0/1-226 FEPENEGELG FKEGDIITLT NQIDENWYEG MLHGQSGFFP INYVEILVAL ENSTTRP00000010711/1-352 FEPENEGELG FKEGDIITLT NQIDENWYEG MLHGQSGFFP INYVEILVAL 351 400 ENSP00000369981/1-352 PH ENSBTAP00000018755/1-352 PH bmy_20350T0/1-226 PH ENSTTRP00000010711/1-352 PH