KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:33 2014 Check: 00 .. Name: ENSTTRP00000008022/1-1037 Len: 1058 Check: 2527 Weight: 1.00 Name: ENSP00000256079/1-1037 Len: 1058 Check: 2102 Weight: 1.00 Name: ENSBTAP00000018760/1-1039 Len: 1058 Check: 1156 Weight: 1.00 Name: BACU006100/1-892 Len: 1058 Check: 2460 Weight: 1.00 Name: bmy_19663T0/1-980 Len: 1058 Check: 7383 Weight: 1.00 // 1 50 ENSTTRP00000008022/1-1037 MDLNRIIQAL KGTIDPKLRI AAENELNQSY KIINFAPSLL RIIVSDHVEF ENSP00000256079/1-1037 MDLNRIIQAL KGTIDPKLRI AAENELNQSY KIINFAPSLL RIIVSDHVEF ENSBTAP00000018760/1-1039 MDLNRIIQAL KGTIDPKLRI AAENELNQSY KIINFAPSLL RIIVSEHVEF BACU006100/1-892 MDLNRIIQAL KGTIDPKLRI AAENELNQSY KIINFAPSLL RIIVSDHVEF bmy_19663T0/1-980 MDLNRIIQAL KGTIDPKLRI AAENELNQSY KIINFAPSLL RIIVSDHVEF 51 100 ENSTTRP00000008022/1-1037 PVRQAAAIYL KNMVTQYWPD REPPPGEAIF PFNIHENDRQ QIRDNIVEGI ENSP00000256079/1-1037 PVRQAAAIYL KNMVTQYWPD REPPPGEAIF PFNIHENDRQ QIRDNIVEGI ENSBTAP00000018760/1-1039 PVRQAAAIYL KNMVTQYWPD REPPPGEAIF PFNIHENDRQ QIRDNIVEGI BACU006100/1-892 PVRQAAAIYL KNMVTQYWPD REPPPGEAIF PFNIHENDRQ QIRDNIVEGI bmy_19663T0/1-980 PVRQAAAIYL KNMVTQYWPD REPPPGEAIF PFNIHENDRQ QIRDNIVEGI 101 150 ENSTTRP00000008022/1-1037 IRSPDLVRVQ LTMCLRAIIK YDFPGHWPAV VDKIDYYLQS QSSGSWLGSL ENSP00000256079/1-1037 IRSPDLVRVQ LTMCLRAIIK HDFPGHWPGV VDKIDYYLQS QSSASWLGSL ENSBTAP00000018760/1-1039 IRSPDLVRVQ LTMCLRAIIK YDFPGHWPAV VDKIDYYLQS QSSGSWLGSL BACU006100/1-892 IRSPDLVR-- ---------- ---------- ---------- ---------- bmy_19663T0/1-980 IRSPDLVRVQ LTMCLRAIIK YDFPGHWPAV VDKIDYYLQS QSSGSWLGSL 151 200 ENSTTRP00000008022/1-1037 LCLYQLVKTY EYKKAEEREP LIAAMQIFLP RIQQQIMQLL SDSSHYSVLI ENSP00000256079/1-1037 LCLYQLVKTY EYKKAEEREP LIIAMQIFLP RIQQQIVQLL PDSSYYSVLL ENSBTAP00000018760/1-1039 LCLYQLVKTY EYKKAEEREP LIAAMQIFLP RIQQQIMQLL PDSSHYSVLI BACU006100/1-892 ---------- -YKKAEEREP LIAAMQIFLP RIQQQIMQLL PDSSHYSVLI bmy_19663T0/1-980 LCLYQLVKTY EYKKAEEREP LIAAMQIFLP RIQQQIMQLL PDSSHYS--- 201 250 ENSTTRP00000008022/1-1037 QKQILKIFYA LVQXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXETLQIDE ENSP00000256079/1-1037 QKQILKIFYA LVQYALPLQL VNNQTMTTWM EIFRTIIDRT VPPETLHIDE ENSBTAP00000018760/1-1039 QKQILKIFYA LVQYALPLQL VNNQTMTAWM EIFRTIIDRT VPPETLQIDE BACU006100/1-892 QKQILKIFYA LVQYALPLQL VNNQTMTAWM EIFRTIIDRT VPPETLQIDE bmy_19663T0/1-980 ---------- ---------L VNNQTMTAWM EIFRTIIDRT VPPETLQIDE 251 300 ENSTTRP00000008022/1-1037 DDRPELVWWK CKKWALHIVA RLFERYGSPG NVTKEYFEFS EFFLKTYAVG ENSP00000256079/1-1037 DDRPELVWWK CKKWALHIVA RLFERYGSPG NVTKEYFEFS EFFLKTYAVG ENSBTAP00000018760/1-1039 DDRPELVWWK CKKWALHIVA RLFERYGSPG NVTKEYFEFS EFFLKTYAVG BACU006100/1-892 DDRPELVWWK CKKWALHIVA RLFERYGSPG NVTKEYFEFS EFFLKTYAVG bmy_19663T0/1-980 DDRPELVWWK CKKWALHIVA RLFERYGSPG NVTKEYFEFS EFFLKTYAVG 301 350 ENSTTRP00000008022/1-1037 IQQVLLKILD QYRQKEYIAP RVLQQAFNYL NQGVVHSVTW KQMKPHIQ-- ENSP00000256079/1-1037 IQQVLLKILD QYRQKEYVAP RVLQQAFNYL NQGVVHSITW KQMKPHIQ-- ENSBTAP00000018760/1-1039 IQQVLLKILD QYRQKEYVAP RVLQQAFNYL NQGIVHSVTW KQMKPHIQ-- BACU006100/1-892 IQQVLLKILD QYRQKEYVAP RVLQQAFNYL NQGVVHSVTW KQMKPHIQVS bmy_19663T0/1-980 IQQVLLKILD QYRQKEYVAP RVLQQAFNYL NQGVVHSVTW KQMKPHIQ-- 351 400 ENSTTRP00000008022/1-1037 ---------- -------NIS EDVIFSVMCY KDEDEELWQE DPYEYIRMKF ENSP00000256079/1-1037 ---------- -------NIS EDVIFSVMCY KDEDEELWQE DPYEYIRMKF ENSBTAP00000018760/1-1039 ---------- -------NIS EDVIFSVMCY KDEDEELWQE DPYEYIRMKF BACU006100/1-892 VGEQLSEIIL WLNFLDRNIS EDVIFSVMCY KDEDEELWQE DPYEYIRMKF bmy_19663T0/1-980 ---------- -------NIS EDVIFSVMCY KDEDEELWQE DPYEYIRMKF 401 450 ENSTTRP00000008022/1-1037 DIFEDYASPT TAAQTLLYTA AKKRKEVLPK MMAFCYQILT DPNFDPRKKD ENSP00000256079/1-1037 DIFEDYASPT TAAQTLLYTA AKKRKEVLPK MMAFCYQILT DPNFDPRKKD ENSBTAP00000018760/1-1039 DIFEDYASPT TAAQTLLYTA AKKRKEVLPK MMAFCYQILT DPNFDPRKKD BACU006100/1-892 DIFEDYASPT TAAQTLLYTA AKKRKE---- ---------- ---------- bmy_19663T0/1-980 DIFEDYASPT TAAQTLLYTA AKKRKEVLPK MMAFCYQILT DPNFDPRKKD 451 500 ENSTTRP00000008022/1-1037 GALHVIGSLA DILLKKSLFK DQMELLLQNH VFPLLLSNLG YLRARSCWVL ENSP00000256079/1-1037 GALHVIGSLA EILLKKSLFK DQMELFLQNH VFPLLLSNLG YLRARSCWVL ENSBTAP00000018760/1-1039 GALHVIGSLA DILLKKSLFK DQMELLLQNH VFPLLLSNLG YLRARSCWVL BACU006100/1-892 ---------- ---------- ---------- ---------- -----SCWVL bmy_19663T0/1-980 GALHVIGSLA DILLKKSLFK DQMELLLQNH VFPLLLSNLG YLRARSCWVL 501 550 ENSTTRP00000008022/1-1037 HAFSSLKFHN ELNLRNAVDL AKKSLIEDKE MPVKVEAALA LQSLISNQTQ ENSP00000256079/1-1037 HAFSSLKFHN ELNLRNAVEL AKKSLIEDKE MPVKVEAALA LQSLISNQIQ ENSBTAP00000018760/1-1039 HAFSSLKFHN ELNLRNAVDL AKKSLIEDKE MPVKVEAALA LQSLISNQTQ BACU006100/1-892 HAFSSLKFHN ELNLRNAVDL AKKSLIEDKE MPVKVEAALA LQSLISNQTQ bmy_19663T0/1-980 HAFSSLKFHN ELNLRNAVDL AKKSLIEDKE MPVKVEAALA LQSLISNQTQ 551 600 ENSTTRP00000008022/1-1037 --AKEYMKPH VRPIMQELLH IVRETENDDV TNVIQKMICE YSQEVASIAV ENSP00000256079/1-1037 --AKEYMKPH VRPIMQELLH IVRETENDDV TNVIQKMICE YSQEVASIAV ENSBTAP00000018760/1-1039 ALAKEYMKPH VRPIMQELLH IVRETENDDV TNVIQKMICE YSQEVASIAV BACU006100/1-892 --AKEYMKPH VRPIMQELLH IVRETENDDV TNVIQKMICE YSQEVASIAV bmy_19663T0/1-980 --AKEYMKPH VRPIMQELLH IVRETENDDV TNVIQKMICE YSQEVASIAV 601 650 ENSTTRP00000008022/1-1037 DMTQHLAEIF GKVLQSDEYE EVEDKTVMAM GILHTIDTIL TVVEDHKEVT ENSP00000256079/1-1037 DMTQHLAEIF GKVLQSDEYE EVEDKTVMAM GILHTIDTIL TVVEDHKEIT ENSBTAP00000018760/1-1039 DMTQHLAEIF GKVLQSDEYE EVEDKTVMAM GILHTIDTIL TVVEDHKEVT BACU006100/1-892 DMTQHLAEIF GKVLQSDEYE EVEDKTVMAM GILHTIDTIL TVVEDHKE-- bmy_19663T0/1-980 DMTQHLAEIF GKVLQSDEYE EVEDKTVMAM GILHTIDTIL TVVEDHKE-- 651 700 ENSTTRP00000008022/1-1037 QQLENICLRI IDLVLQKHVI EFYEEILSLA YSLTCHGISP QMWQLLGILY ENSP00000256079/1-1037 QQLENICLRI IDLVLQKHVI EFYEEILSLA YSLTCHSISP QMWQLLGILY ENSBTAP00000018760/1-1039 QQLENICLRI IDLVLQKHVI EFYEEILSLA YSLTCHGISP QMWQLLGILY BACU006100/1-892 ---------- --------VT QQLENI---- ----C----- -----LRIID bmy_19663T0/1-980 ---------- ------KHVI EFYEEILSLA YSLTCHGISP QMWQLLGILY 701 750 ENSTTRP00000008022/1-1037 EIFQQDCFEY FTDMMPLLHN YVTIDTNTLL SNPKHLEILF TMCRKVLCGD ENSP00000256079/1-1037 EVFQQDCFEY FTDMMPLLHN YVTIDTDTLL SNAKHLEILF TMCRKVLCGD ENSBTAP00000018760/1-1039 EVFQQDCFEY FTDMMPLLHN YVTIDTNTLL SNPKHLEILF TMCRKVLCGD BACU006100/1-892 LVLQK----H VIDMMPLLHN YVTIDTNTLL SNPKHLEILF TMCRKVLCGD bmy_19663T0/1-980 EIFQQDCFEY FTDMMPLLHN YVTIDTNTLL SNPKHLEILF TMCRKVLCGD 751 800 ENSTTRP00000008022/1-1037 AGEDAECHAA KLLEVIILQC KGRGIDQXXX XXXXXXXXXX XXXXXXXXXX ENSP00000256079/1-1037 AGEDAECHAA KLLEVIILQC KGRGIDQCIP LFVQLVLERL TRGVKTSELR ENSBTAP00000018760/1-1039 AGEDAECHAA KLLEVIILQC KGRGIDQCIP LFVQLVLERL TRGVKTSELR BACU006100/1-892 AGEDAECHAA KLLEVIILQC KGRGIDQCIP LFVQLVLERL TRGVKTSELR bmy_19663T0/1-980 AGEDAECHAA KLLEVIILQC KGRGIDQCIP LFVQLVLERL TRGVKTSELR 801 850 ENSTTRP00000008022/1-1037 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000256079/1-1037 TMCLQVAIAA LYYNPDLLLH TLERIQLPHN PGPITVQFIN QWMNDTDCFL ENSBTAP00000018760/1-1039 TMCLQVAIAA LYYNPDLLLH TLERIQLPHN PGPVTVQFIN QWMNDTDCFL BACU006100/1-892 TMCLQVAIAA LYYNPDLLLH TLERIQLPHN PGPVTVQFIN QWMNDTDCFL bmy_19663T0/1-980 TMCLQVAIAA LYYNPDLLLH TLERIQLPHN PGPVTVQFIN QWMNDTDCFL 851 900 ENSTTRP00000008022/1-1037 XHHDRKMCII GLSILLELQN RPPGVDAVVG QIVPSILFLF LGLKQVCATK ENSP00000256079/1-1037 GHHDRKMCII GLSILLELQN RPPAVDAVVG QIVPSILFLF LGLKQVCATR ENSBTAP00000018760/1-1039 GHHDRKMCII GLSILLELQN RPPAVDAVVG QIVPSILFLF LGLKQVCATR BACU006100/1-892 GHHDRKMCII GLSILLELQN RPPGVDAVVG QIVPSILFLF LGLKQVCATK bmy_19663T0/1-980 GHHDRKMCII GLSILLELQN RPPGVDAVV- ---------- ------CATK 901 950 ENSTTRP00000008022/1-1037 QLVNREDRSK AEKADMEENE EISSDEEETN VTAQAMQSNN GRGEDEEEDD ENSP00000256079/1-1037 QLVNREDRSK AEKADMEENE EISSDEEETN VTAQAMQSNN GRGEDEEEED ENSBTAP00000018760/1-1039 QLVNREDHSK ADKANIEENE EISSDEEETN VTAQAMQSNN GRGEDEEEDD BACU006100/1-892 QLVNREDRSK AEKADMEENE EISSDEEETN VTAQAMQSNN GRGEDEEEDD bmy_19663T0/1-980 QLVNREDRSK AEKADMEENE EISSDEEETN VTAQAMQSNN GRGEDEEEDD 951 1000 ENSTTRP00000008022/1-1037 DDWDEEVLEE TALEGFSTPL DLDNSVDEYQ FFTQALLTVQ NRDAAWYQLL ENSP00000256079/1-1037 DDWDEEVLEE TALEGFSTPL DLDNSVDEYQ FFTQALITVQ SRDAAWYQLL ENSBTAP00000018760/1-1039 DDWDEEVLEE TALEGFSTPL DLDNSVDEYQ FFTQALLTVQ NRDAAWYQLL BACU006100/1-892 DDWDEEVLEE TALEGFSTPL DLDNSVDEYQ FFTQALLTVQ NRDAAWYQLL bmy_19663T0/1-980 DDWDEEVLEE TALEGFSTPL DLDNSVDEYQ FFTQALLTVQ NRDAAWYQLL 1001 1050 ENSTTRP00000008022/1-1037 MAPLSEDQRR ALQEVYTLAE HRRTVAEAKK KIEQQGGFTF ENKGVLSAFN ENSP00000256079/1-1037 MAPLSEDQRT ALQEVYTLAE HRRTVAEAKK KIEQQGGFTF ENKGVLSAFN ENSBTAP00000018760/1-1039 MAPLSEDQRR ALQEVYTLAE HRRTVAEAKK KIEQQGGFTF ENKGVLSAFN BACU006100/1-892 MAPLSEDQRR ALQEVYTLAE HRRTVAEAKK KIEQQGGFTF ENKGVLSAFN bmy_19663T0/1-980 MAPLSEDQRR ALQEVYTLAE HRRTVAEAKK KIEQQGGFTF ENKGVLSAFN 1051 1100 ENSTTRP00000008022/1-1037 FGTMPTNN ENSP00000256079/1-1037 FGTVPSNN ENSBTAP00000018760/1-1039 FGTMPTNN BACU006100/1-892 FGTMPTNN bmy_19663T0/1-980 FGTMPTNN