KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:37 2014 Check: 00 .. Name: ENSP00000373873/1-680 Len: 1066 Check: 1948 Weight: 1.00 Name: ENSBTAP00000018773/1-775 Len: 1066 Check: 2534 Weight: 1.00 Name: ENSTTRP00000011367/1-590 Len: 1066 Check: 2561 Weight: 1.00 Name: bmy_01913T0/1-406 Len: 1066 Check: 2463 Weight: 1.00 Name: BACU009232/1-781 Len: 1066 Check: 8992 Weight: 1.00 // 1 50 ENSP00000373873/1-680 MPSVSKAAAA ALSGSPPQTE KPTHYRYLKE FRTEQCPL-- ---------- ENSBTAP00000018773/1-775 ---------- -------QTE KPTHYRYLKE FRTEQCSL-- ---------- ENSTTRP00000011367/1-590 ---------- ---------- ------YLKE FRTEQCSL-- ---------- bmy_01913T0/1-406 ---------- ---------- ---------- -RPAHPSR-- ---------- BACU009232/1-781 --------MN CVLCAPAAGA LRVLRLVRWP FRSLHPPPGG RARAQPAAEG 51 100 ENSP00000373873/1-680 ---------- -FSQHKCAQH R--------- ---------- PFT-CFH--- ENSBTAP00000018773/1-775 ---------- -FVQHKCTQH R--------- ---------- PFT-CFH--- ENSTTRP00000011367/1-590 ---------- -FVQHKCTQH R--------- ---------- PFT-CFH--- bmy_01913T0/1-406 ---------- -FCHS----- ---------- ---------- -LSLC----- BACU009232/1-781 EEEDDPNRPL QFSSSKAIPF RWTVKHSLGR EQQRPWWRVL PFSLCLMVLV 101 150 ENSP00000373873/1-680 -WHFLNQ--- ---------- --RRRRPLRR RDGTFNYSPD VYCSKYNEAT ENSBTAP00000018773/1-775 -WHFLNQ--- ---------- --RRRRPLRR RDGTFNYSPD VYCSKYDEAS ENSTTRP00000011367/1-590 -WHFLNQ--- ---------- --RRRRPLRR RDGTFNYSPD VYCSKYDEAS bmy_01913T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU009232/1-781 IWCFFRQETS ADRWLRRMLE EERRRRPLRR RDGTFNYSPD VYCSKYDEAS 151 200 ENSP00000373873/1-680 GVCPDGDE-- ---------- ---------- ---------- ---------- ENSBTAP00000018773/1-775 GVCPDGDE-- ---------- ---------- ---------- ---------- ENSTTRP00000011367/1-590 GLCPDGDPPG VLCHLWVAPS SPPPMGTPSV PLLLXXXXXX XXXXXXXXXX bmy_01913T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU009232/1-781 GLCPDGDE-- ---------- ---------- ---------- ---------- 201 250 ENSP00000373873/1-680 ---------- ---------- ---------- ---------- ---CPYLHRT ENSBTAP00000018773/1-775 ---------- ---------- ---------- ---------- ---CPYLHRT ENSTTRP00000011367/1-590 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXCPYLHRT bmy_01913T0/1-406 ---------- ---------- ---------- ---------- ---CHHV--- BACU009232/1-781 ---------- ---------- ---------- ---------- ---CPYLHRT 251 300 ENSP00000373873/1-680 TGDTERKYHL RYYKTGTCIH ETDARGHCVK NGLHCAFAHG PLDLRPPVCD ENSBTAP00000018773/1-775 TGDTERKYHL RYYKTGTCIH ETDARGHCVK NGLHCAFAHG PLDLRPPVCD ENSTTRP00000011367/1-590 TGDTERKYHL RYYKTGTCIH ETDARGHCVK NGLHCAFAHG PLDLRPPVCD bmy_01913T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU009232/1-781 TGDTERKYHL RYYKTGTCIH ETDARGHCVK NGLHCAFAHG PLDLRPPVCD 301 350 ENSP00000373873/1-680 VRELQAQEAL QNGQLGGGEG VPDLQPGVLA SQAMIEKILS EDPRWQ---- ENSBTAP00000018773/1-775 VRELQAQEAL QNGQLGAGDG IPDLQPGVLA SQALMEKILG EDPRWQ---- ENSTTRP00000011367/1-590 IRELQAQEAL QNGQLSAGDG VPDLQPGVLA SQALMEKILG EDPRWQVWLP bmy_01913T0/1-406 ---------- ---------A VPE------- ---------- ---------- BACU009232/1-781 IRELQAQEAL QNGQLSAGDG VPDLQPGVLA SQALMEKILG EDPRWQ---- 351 400 ENSP00000373873/1-680 ---------- ---DANFVLG SYKTEQCPKP PRLCRQGYAC PHYHNSRDRR ENSBTAP00000018773/1-775 ---------- ---DTNFVLG SYKTEQCPKP PRLCRQGYAC PHFHNSRDRR ENSTTRP00000011367/1-590 AHVCSFRVDP CFSDTNFVLG SYKTEQCPKP PRLCRQGYAC PHFHNSRDRR bmy_01913T0/1-406 ---------- ---------- ---------- -----QG--- ---------- BACU009232/1-781 ---------- ---------G SYKTEQCPKP PRLCRQGYAC PHFHNSRDRR 401 450 ENSP00000373873/1-680 RNPRRFQYRS TPCPSVKHGD EWGEPSRCDG GDGCQYCHSR TEQQFHPE-- ENSBTAP00000018773/1-775 RDPRRFQYRS TPCPSVKHGD EWGEPSRCAS GDSCALCHSR TEQQFHPE-- ENSTTRP00000011367/1-590 RDPRRFQYRS TPCPSVKHGD EWGEPSRCES GDSCQYCHSR TEQQFHPEXX bmy_01913T0/1-406 ---------- ---------- ---------A GSSC------ ---------- BACU009232/1-781 RDPRRFQYRS TPCPSVKHGD EWGEPSRCES GDSCQYCHSR TEQQFHPE-- 451 500 ENSP00000373873/1-680 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018773/1-775 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011367/1-590 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01913T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU009232/1-781 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000373873/1-680 ---------- ---------- ---------- -----STKCN DMRQTGYCPR ENSBTAP00000018773/1-775 ---------- ---------- ---------- --IYKSTKCN DMRQTGHCPR ENSTTRP00000011367/1-590 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXIYKSTKCN DMLQTGHCPR bmy_01913T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU009232/1-781 ---------- ---------- ---------- --IYKSTKCN DMRQTGHCPR 551 600 ENSP00000373873/1-680 GPFCAFAHVE K--------- ---------- ---------- ---------- ENSBTAP00000018773/1-775 GPFCAFAHVD TNAQTDFESP GNMISSPLTA EGYPLPSASG RSVPAEPTTA ENSTTRP00000011367/1-590 GPFCAFAHVE K--------- ---------- ---------- ---------- bmy_01913T0/1-406 ---YVFA--- ---------- ---------- ---------- ---------- BACU009232/1-781 GPFCAFAHVE K--------- ---------- ---------- ---------- 601 650 ENSP00000373873/1-680 SLGMVNEWGC HDLHLTSP-- SSTGSGQ--- ---------- ----PGNAKR ENSBTAP00000018773/1-775 SVGEPGSLLG HNLGSFSPLR ELSPSGQGVA VSLLLVFLVP RGCLPGDFSE ENSTTRP00000011367/1-590 SLGMASDWGC RDLTSTSG-- PVAPSGQ--- ---------- ----PGHXXX bmy_01913T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU009232/1-781 SLGMASDWGC RDLTSASG-- PAAPSGQ--- ---------- ----PGHAKR 651 700 ENSP00000373873/1-680 RDSPA----- ---------- --EGGPRGSE QDSK------ ---QNHLAVF ENSBTAP00000018773/1-775 GDNQDFLPLG SSEAISECPL SLRGRDHVAV HEPSAGSSCC VFAQSHLAVL ENSTTRP00000011367/1-590 XXXXX----- ---------- --XXXXXXXX XXXXXLAHLV VFAQSHLAVL bmy_01913T0/1-406 ---------- ---------- ---------- ---------- ---QGHLAVL BACU009232/1-781 RDSPA----- ---------- --EGSQKASE QDSK------ ---QGHLAVL 701 750 ENSP00000373873/1-680 AAVHPPAPSV SSSVASSLAS SAGSGSSSPT ALPAPPARAL PLGPASSTVE ENSBTAP00000018773/1-775 AVGHPLAPSV SSSLASSLAS STGSGGSSPT ALPALSARTH PLDPSGSAGE ENSTTRP00000011367/1-590 AVGHPLAPSV SSSLASSLAS STGSGGSSPT ALPTVSARAH PLDPTGSAVE bmy_01913T0/1-406 AVGHPLAPSV SSSLASSLAS STGSGGSSPT ALPTVSARAH PLDPTGSAVE BACU009232/1-781 AVGHPLAPSV SSSLASSLAS STGSGGSSPT ALPTVSARAH PLDPTGSAVE 751 800 ENSP00000373873/1-680 AVLGS-ALDL HLSNVNIASL EKDLEEQDGH DLGAAGPRSL AGSAPVAIPG ENSBTAP00000018773/1-775 GVPGGRAWDM KGLASLKVSW DRRAAPHQ-- ----KGQRSL GGSAPVAIPG ENSTTRP00000011367/1-590 AVP------- ---------- ---------- ---------- ---------- bmy_01913T0/1-406 AVPGS-SLDL HLGDISLVPP DKDLEEHDSR DLGPTGQRSL GGSAPVAIPG BACU009232/1-781 AVPGS-SLDL HLGDISLVPP DKDLEEHDSR DLGPTGQRSL GGSAPVAIPG 801 850 ENSP00000373873/1-680 SLPRAPSLHS PSSASTSPLG SLSQPLPGPV GSSAMTPPQQ PPPLRSEPGT ENSBTAP00000018773/1-775 CLPRSPSLHS SSS------- -----LPGPL ISSAMTPPQQ PPPLKSEPRA ENSTTRP00000011367/1-590 ---------- ---------- ---------- ---------- ---------- bmy_01913T0/1-406 CLPRSPSLQS SSSLSASPLG SFSQSLSGPL VSSAMTPPQQ PPALKSEPRA BACU009232/1-781 CLPRSPSLQS SSSLSASPLG SFSQSLSGPL VSSAMTPPQQ PPALKSEPRA 851 900 ENSP00000373873/1-680 LGSAASSYSP LGLNGVPGSI WDFVSGSFSP SPSPILSAGP PSSSSASPNG ENSBTAP00000018773/1-775 LGPSVSSYNS FGLNGVPGSI WDFVSGSFSP SPSPILNAGP AASSGVSPSS ENSTTRP00000011367/1-590 ---------- ---------- ---------- ---------- ---------- bmy_01913T0/1-406 LGPPAPSYNS FGLNGVPGSI WDFVSGSFSP SPSPILNAGP TASSGASPNS BACU009232/1-781 LGPPAPSYNS FGLNGVPGSI WDFVSGSFSP SPSPILNAGP TASSGASPNS 901 950 ENSP00000373873/1-680 AELARVRRQL DEAKRKIRQW EESWQQVKQV CDAWQREAQE AKERARVADS ENSBTAP00000018773/1-775 AELARVRRQL DEAKRKIRQW EESWQQVKQA CDAWQREAKE AKERALAADS ENSTTRP00000011367/1-590 ---------- ---------- ---------- ---------- ---------- bmy_01913T0/1-406 AELARVRRQL DEAKRKIRQW EESWQQVKQA CDAWQREAKE AKERALAADS BACU009232/1-781 AELARVRRQL DEAKRKIRQW EESWQQVKQA CDAWQREAKE AKERALAADS 951 1000 ENSP00000373873/1-680 DRQLALQKKE EVEAQ----- ---------- ---------- ---------- ENSBTAP00000018773/1-775 ARQLALQKKE EVEAQFRRLQ EELEGRGLAS ALPGLSGCGD IGAIPLPKLH ENSTTRP00000011367/1-590 ---------- ---------- ---------- ---------- ---------- bmy_01913T0/1-406 ARQLALQKKE EVEAQFRRLQ EELEGRGLAS ALPGLRGCGD IGAIPLPKLH BACU009232/1-781 ARQLALQKKE EVEAQFRRLQ EELEGRGLAS ALPGLRGCGD IGAIPLPKLH 1001 1050 ENSP00000373873/1-680 ---------- -----VIFQL RAKQCVACRE RAHGAVLRPC QHHILCEPCA ENSBTAP00000018773/1-775 SLQSQLRLDL EAVDGVIFQL RAKQCVVCRE RA-GAVLRPC QHRVLCEPCA ENSTTRP00000011367/1-590 ---------- ---------- ---------- ---------- ---------- bmy_01913T0/1-406 SLQSQLRLDL EAVDGVIFQL RAKQCGVCGE RARSAVLRPC QHRVLCEPCA BACU009232/1-781 SLQSQLRLDL EAVDGVIFQL RAKQCGVCGE RARSAVLRPC QHRVLCEPCA 1051 1100 ENSP00000373873/1-680 ATAPECPYCK GQPLQW ENSBTAP00000018773/1-775 ASAPECAYC- ------ ENSTTRP00000011367/1-590 ---------- ------ bmy_01913T0/1-406 ASAPECPYCA GQPLPW BACU009232/1-781 ASAPECPYCA GQPLPW