KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:44 2014 Check: 00 .. Name: BACU001085/1-683 Len: 1235 Check: 8318 Weight: 1.00 Name: ENSTTRP00000002851/1-960 Len: 1235 Check: 9335 Weight: 1.00 Name: ENSP00000343200/1-868 Len: 1235 Check: 8568 Weight: 1.00 Name: bmy_21053T0/1-795 Len: 1235 Check: 8220 Weight: 1.00 Name: ENSBTAP00000018802/1-965 Len: 1235 Check: 2976 Weight: 1.00 // 1 50 BACU001085/1-683 MSPPSVA--- ---------- ---------- ---------- ---------- ENSTTRP00000002851/1-960 -----MA--- ---------- ---------- ---------- ---------- ENSP00000343200/1-868 MIPKSLVQAA ETQRGLCEPG GKGREGRSGG KGETRPRGVG TQEGKGTIPG bmy_21053T0/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018802/1-965 ---ALRT--- ---------- ---------- ---------- ---------- 51 100 BACU001085/1-683 ---------- ---------- ---KFVGHYT -STLAGLIVA IGPE------ ENSTTRP00000002851/1-960 ---------- ---------- ---LLCGLGQ VTLRLWAP-- LPPL------ ENSP00000343200/1-868 SPREKRGERG EGDPALLPAE DLWRLPGSKD -RLRSSLLPP PGPPSSDSGP bmy_21053T0/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018802/1-965 ---------- ---------- ---GLSGPQD -CLQLWAHRN LSAQ------ 101 150 BACU001085/1-683 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002851/1-960 ---------- ---------- ---------- ---------- ---------- ENSP00000343200/1-868 GPPSSHSGKT AQGPRTLNWA RKQSARTSSN LCAWSLAMAT KMAEIPSSPY bmy_21053T0/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018802/1-965 ---------- ---------- ---------- ---------- ---------- 151 200 BACU001085/1-683 ---------- ---------- ---------- ---------- ----RIREMK ENSTTRP00000002851/1-960 ---------- ---------- ---------- ---------- ----SEKKIR ENSP00000343200/1-868 EPGQRGMKDT QRGDAPQRGS PEPRILQLAR VGNVYLKEES SRSGRLEAKK bmy_21053T0/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018802/1-965 ---------- ---------- ---------- ---------- ----RTRGSG 201 250 BACU001085/1-683 VAPT------ ---------- -AWSGGMEAL TTQLGPGREG NSSPNSKQEL ENSTTRP00000002851/1-960 FLAT------ --------GA FVRSGGMEAL TTQLGPGREG NSSPNSKQEL ENSP00000343200/1-868 WIPTKFLENL SVPHVDLGGN QLWSGGMEAL TTQLGPGREG SSSPNSKQEL bmy_21053T0/1-795 ---------- ---------- ------MEAL TTQLGPGREG NSSPNSKQEL ENSBTAP00000018802/1-965 FLAT------ --------QA FLRSGGMEAL TTQLGPGREG NSSPNSKQEL 251 300 BACU001085/1-683 QPYSGSSALK PNQVGETSLY GVPIVSLVID GQERLCLAQI SNTLLKNYSY ENSTTRP00000002851/1-960 QPYSGSSALK PNQVGETSLY GVPIVSLVID SQERLCLAQI SNTLLKNYSY ENSP00000343200/1-868 QPYSGSSALK PNQVGETSLY GVPIVSLVID GQERLCLAQI SNTLLKNYSY bmy_21053T0/1-795 QPYSGSSALK PNQVGETSLY GVPIVSLVID GQERLCLAQI SNTLLKNYSY ENSBTAP00000018802/1-965 QPYSGSSALK PNQVGETSLY GVPIVSLVID GQERLCLAQI SNTLLKNYSY 301 350 BACU001085/1-683 NEIHNRRVAL GITCVQCTPV QLEILRRAGA MPISSRRCGM ITKREAERLC ENSTTRP00000002851/1-960 NEIHNRRVAL GITCVQCTPV QLEILRRAGA MPISSRRCGM ITKREAERLC ENSP00000343200/1-868 NEIHNRRVAL GITCVQCTPV QLEILRRAGA MPISSRRCGM ITKREAERLC bmy_21053T0/1-795 NEIHNRRVAL GITCVQCTPV QLEILRRAGA MPISSRRCGM ITKREAERLC ENSBTAP00000018802/1-965 NEIHNRRVAL GITCVQCTPV QLEILRRAGA MPISSRRCGM ITKREAERLC 351 400 BACU001085/1-683 KSFLGEHKPP KLPENFAFDV VHECAWGSRG SFIPARYNSS RAKCIKCGYC ENSTTRP00000002851/1-960 KSFLGEHKPP KLPENFAFDV VHECAWGSRG SFIPARYNSS RAKCIKCGYC ENSP00000343200/1-868 KSFLGEHKPP KLPENFAFDV VHECAWGSRG SFIPARYNSS RAKCIKCGYC bmy_21053T0/1-795 KSFLGEHKPP KLPENFAFDV VHECAWGSRG SFIPARYNSS RAKCIKCGYC ENSBTAP00000018802/1-965 KSFLGEHKPP KLPENFAFDV VHECAWGSRG SFIPARYNSS RAKCIKCGYC 401 450 BACU001085/1-683 SMYFSPNKFI FHSHRTPDAK YTQPDAANFN SWRRHLKLSD KSATDELSHA ENSTTRP00000002851/1-960 SMYFSPNKFI FHSHRTPDAK YTQPDAANFN SWRRHLKLSD KSATDELSHA ENSP00000343200/1-868 SMYFSPNKFI FHSHRTPDAK YTQPDAANFN SWRRHLKLSD KSATDELSHA bmy_21053T0/1-795 SMYFSPNKFI FHSHRTPDAK YTQPDAANFN SWRRHLKLSD KSATDELSHA ENSBTAP00000018802/1-965 SMYFSPNKFI FHSHRTPDAK YTQPDAANFN SWRRHLKLSD KSATDELSHA 451 500 BACU001085/1-683 WEDVKAMFNG GTRKRTFSLQ --GGGGANGG SGGQGKGGAG GGGGGGPGCG ENSTTRP00000002851/1-960 WEDVKAMFNG GTRKRTFSLQ --GGGGANGG SGGQGKGGAG GGGGGGPGCG ENSP00000343200/1-868 WED------- ---------- ---------- ---------- ---------- bmy_21053T0/1-795 WEDVKAMFNG GTRKRTFSLQ --GGGGANGG SGGQGKGGAG GGGGGGPGCG ENSBTAP00000018802/1-965 WEDVKAMFNG GTRKRTFSLQ GGGGGGANGG SGGQGKGGA- GGGGGGPGCG 501 550 BACU001085/1-683 AEMAPGPPPH KSLRCGEEEA AGPPGPPPPH AQRGXXXXXX XXXXXXXXXX ENSTTRP00000002851/1-960 AEMAPGPPPH KSLRCGEEEA AGPPGPPPPH AQRGLGLAAG AGGPPGPGGP ENSP00000343200/1-868 ---------- ---------- ---------- --RGLGLATG ASGPAGPGGP bmy_21053T0/1-795 AEMAPGPPPH KSLRCGEEEA AGPPGPPPPH AQRGLGLAAG AGGPAGPGGP ENSBTAP00000018802/1-965 ADMAPGPPPH KSLRCGEEES AGPPGPPPPH AQRGLGLAAG AGGPAGPGGP 551 600 BACU001085/1-683 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX----- ENSTTRP00000002851/1-960 GGGAGVRSYP VIPVPSKGFG LLQKLPPPLF PHPYGFPTAF GLCPKKDDPV ENSP00000343200/1-868 GGGAGVRSYP VIPVPSKGFG LLQKLPPPLF PHPYGFPTAF GLCPKKDDPV bmy_21053T0/1-795 GGGAGVRSYP VIPVPSKGFG LLQKLPPPLF PHPYGFPTAF GLCPKKDDPE ENSBTAP00000018802/1-965 GGGAGVRSYP VIPVPSKGFG LLQKLPPPLF PHPYGFPTAF GLCPKKDDPV 601 650 BACU001085/1-683 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002851/1-960 LGAGEPKGGP GTGSGGGAGT GAGAGGPGTG HLPPGAGAGP GGGAMFWGHQ ENSP00000343200/1-868 LGAGEPKG-- ---------- ---------- ---------- ---------- bmy_21053T0/1-795 GGLVAEER-- ---------- ---------- ---------- ---------- ENSBTAP00000018802/1-965 LGAGEPKGGP GPGSGGGAGT GAGAGGPGTG HLPPGAGTGP GGGAMFWGHQ 651 700 BACU001085/1-683 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002851/1-960 PPGAAKDAAA VAAAAAAATV YPTFPMFW-- ---------- ---------- ENSP00000343200/1-868 ---------- ---------- ---------- ---------- ---------- bmy_21053T0/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018802/1-965 PSGAAKDAAA VAAAAAAATV YPTFPMFWPA AGSLPVPPYP AAQSQAKAVA 701 750 BACU001085/1-683 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002851/1-960 ---------- ---------- ---------- ---------- ---------- ENSP00000343200/1-868 ---------- ---------- ---------- ---------- ---------- bmy_21053T0/1-795 ---------- ---------- ---------- --------CP SALSRGPLDE ENSBTAP00000018802/1-965 AAVAAAAAAA AAAAGGGGPE PLDGTEPTKE GGLVAEERCP SALSRGPLDE 751 800 BACU001085/1-683 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002851/1-960 --------PA AGSLPVPPYP AAQSXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000343200/1-868 ---------- ---------- ---------- ---------- ---------- bmy_21053T0/1-795 EGADEALPPP LAPLPPPPPP PARK------ ---------- ---------- ENSBTAP00000018802/1-965 DGADEALPPP LAPLAPPPPP PARK------ ---------- ---------- 801 850 BACU001085/1-683 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002851/1-960 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000343200/1-868 ---------- ---------- ---------- ---------- ---------- bmy_21053T0/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018802/1-965 ---------- ---------- ---------- ---------- ---------- 851 900 BACU001085/1-683 ----XXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000002851/1-960 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000343200/1-868 ----GSYVSA FRPVVKDTES IAKLYGSARE AYGAGPARGP GPGAGS-GGY bmy_21053T0/1-795 ----GSYVSA FRPVVKDAES IAKLYGSARD AYGGGPARGP GPGTGSGGGY ENSBTAP00000018802/1-965 ----GSYVSA FRPVVKDAES IAKLYGSARE AYGGGPARGP GPGAGTGGGY 901 950 BACU001085/1-683 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX---- ENSTTRP00000002851/1-960 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX----X ENSP00000343200/1-868 VSPDFLSEGS SSYNSASPDV DTADEPEVDV ESNRFPDDED AQEETE---P bmy_21053T0/1-795 VSPDFLSEGS SSYHSASPDV DTADEPEVDV ESNRFPDDEG APDEAEPGAP ENSBTAP00000018802/1-965 VSPDFLSEGS SSYHSASPDV DTADEPEVDV ESNRFPDEEG APDEAE---P 951 1000 BACU001085/1-683 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002851/1-960 XXXXXXXXXX XXXXXXXXXX TSSGADGPTD SPDGGSPRPR RPPGLPPASR ENSP00000343200/1-868 SAPSAGGGPD ---------- ---------- ---------- -------AGR bmy_21053T0/1-795 GAPSTGDGPD GDQQAGPLST TSSGADGPTD SPDGGSPRPR RPPGLPPASR ENSBTAP00000018802/1-965 GAPSTGGSPN GDQTAGPPSI TSSGADGPTD SPEGGSPRPR RRPGLPPASR 1001 1050 BACU001085/1-683 ---------- ---------- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000002851/1-960 SAFGDLAADD MVRRPERSPP S--GGYELRE SCGPLGGPAP AKVYAPELEE ENSP00000343200/1-868 PAFGDLAAED LVRRPERSPP SGGGGYELRE PCGPLGGPAP AKVFAPERDE bmy_21053T0/1-795 SAFGDLAADD MVRRPERSPP S--GGYELRE SCGPLGGPAP AKVYAPEREE ENSBTAP00000018802/1-965 AAFGDLAADD MVRRPEKSSP S--GGYELRE ACGPLGGPAP AKVYAPERDE 1051 1100 BACU001085/1-683 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000002851/1-960 HVKSAAAALG PAASYLCTPE AHEPDKEDNH STADDLETRK SYPDQRSISQ ENSP00000343200/1-868 HVKSAAVALG PAASYVCTPE AHEPDKEDNH SPADDLETRK SYPDQRSISQ bmy_21053T0/1-795 HVKSAAAALG PAASYLCTPE AHEPDKEDNH STADDLETRK SYPDQRSISQ ENSBTAP00000018802/1-965 HVKSAAAALG PAASYLCAPE AHEPDKEDNH STADDLETRK CYPDQRSISQ 1101 1150 BACU001085/1-683 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXRPRWP ENSTTRP00000002851/1-960 PSPANTDRGE DGLTLDVTGT QLVEKDIENL ARDELQKLLL EQMELRKKLE ENSP00000343200/1-868 PSPANTDRGE DGLTLDVTGT HLVEKDIENL AREELQKLLL EQMELRKKLE bmy_21053T0/1-795 PSPANTDRGE DGLTLDVTGT QLVEKDIENL ARDELQKLLL EQMELRKKLE ENSBTAP00000018802/1-965 TSPANTDRGE DGLTLDVTGT QLVEKDIENL ARDELQKLLL EQMELRKKLE 1151 1200 BACU001085/1-683 R--------- ---------- ----CPPRPH AKAPMCRPSG LWSRTPRASP ENSTTRP00000002851/1-960 REFQSLKDNF QDQMKRELAY REEMVQQLQI VRDTLCNELD QERKARYAIQ ENSP00000343200/1-868 REFQSLKDNF QDQMKRELAY REEMVQQLQI VRDTLCNELD QERKARYAIQ bmy_21053T0/1-795 REFQSLKDNF QDQMKRELAY REEMVQQLQI VRDTLCNELD QERKARYAIQ ENSBTAP00000018802/1-965 REFQSLKDNF QDQMKRELAY REEMVQQLQI VRDTLCNELD QERKARYAIQ 1201 1250 BACU001085/1-683 SSM--VAPAT RTAAGQPVGP GQAQGQAAAT ----- ENSTTRP00000002851/1-960 QKLKEAHDAL HHFSCKMLTP RHCTGNCSFK PPLLP ENSP00000343200/1-868 QKLKEAHDAL HHFSCKMLTP RHCTGNCSFK PPLLP bmy_21053T0/1-795 QKLKEAHDAL HHFSCKMLTP RHCTGNCSFK PPLLP ENSBTAP00000018802/1-965 QKLKEAHDAL HHFSCKMLTP RHCTGNCSFK PPLLP