KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:44 2014 Check: 00 .. Name: ENSP00000219301/1-395 Len: 428 Check: 7752 Weight: 1.00 Name: ENSBTAP00000018804/1-327 Len: 428 Check: 8351 Weight: 1.00 Name: ENSTTRP00000008012/1-394 Len: 428 Check: 3568 Weight: 1.00 Name: bmy_17220T0/1-378 Len: 428 Check: 3949 Weight: 1.00 Name: BACU001816/1-312 Len: 428 Check: 4685 Weight: 1.00 // 1 50 ENSP00000219301/1-395 ---------- -MVSAAGLSG DGKMRGVLLV LLGLLYSSTS CGVQKASVFY ENSBTAP00000018804/1-327 ---------- ---------- MAAMRRALLL LLYVSHASAS CGIQKSNIA- ENSTTRP00000008012/1-394 ---------- -MVSAAALSG DGRMRRTLLV LFYVSHASAT CGIQKSNR-- bmy_17220T0/1-378 ---------- ---------- ---MRGTFLV LFYVSHASAT CGIQKSNTV- BACU001816/1-312 MRLLFCVHSC PWCLLRLSLG MAAMRGTLLV LLYVSHASAT CGIQKSNPV- 51 100 ENSP00000219301/1-395 GPDPKEGLVS SMEFPWVVSL QDSQYTHLAF GCILSEFWVL SIASAIQNRK ENSBTAP00000018804/1-327 -VTSEEGLVE EQEFPWVVSL QDSQYTHLTF GSILSEFWIL SIASTFQNRK ENSTTRP00000008012/1-394 -GNSEEGLVE DEEFPWVVSL QDVQYTHLAF GSILSEFWIL SIASAFQNRK bmy_17220T0/1-378 -ETSEEGLVE DEEFPWVVSL QDVQYTHLAF GSILT----- ---------- BACU001816/1-312 -ETSEEGLVE DEEFPWVVSL QDVQYTHLAF GSVLS----- ---------- 101 150 ENSP00000219301/1-395 DIVVIVGISN MDPSKIAHTE YPVNTIIIHE DFDNNSMSNN IALLKTDTAM ENSBTAP00000018804/1-327 DAVAIIGIAK MDAKLIAHEE YPINTIIIHE DFDNKTMRNN IALLKTDTAM ENSTTRP00000008012/1-394 DAVAIVGIAK MDAKLIAHKE YPVNTIIVHE DFDNKTMENN IALLKTDTAM bmy_17220T0/1-378 ---------K MDAKLIAHKE YPVYTIIIHE DFDNKTMKNN IALLKTDTAM BACU001816/1-312 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000219301/1-395 HFGNLVQSIC FLGRMLHTPP VLQNCWVSGW NPTSA----- ---------- ENSBTAP00000018804/1-327 QFNSLVRPIC FLGRKLNRPP VLMNCWVAGW NPTSA----- ---------- ENSTTRP00000008012/1-394 QFNNLVQPIC FLGRKLHMLP ALQNCWVAGW NPTSA----- ---------- bmy_17220T0/1-378 QFNNLVRPIC FLGRKLQMPP ALQNCWVAGW NPTSAVNAFL LLEGAVCVLA BACU001816/1-312 ---SVVQ--- ---------- ---------- ---------- ---------- 201 250 ENSP00000219301/1-395 --TGNHMTMS VLRKIFVKDL DMCPLYKLQK TECGSHTKEE TKTACLGDPG ENSBTAP00000018804/1-327 --TGNHMTMS ILRKISVKDI DSCPLNIEQK TGCGNHLEME TNAVCLGDPG ENSTTRP00000008012/1-394 --TGNHMTMS ILRKISVKDI DLCPLNKIEK TGCGNHIEME TDAVCLGDPG bmy_17220T0/1-378 VGTGNHMTMS ILRKISVKDI DLCPLNKIEK TGCGNHIEME TDAVCLGDPG BACU001816/1-312 --TGNHMTMS ILRKISVKDI DLCPLNKIEK TGCGNHIEME TDAVCLGDPG 251 300 ENSP00000219301/1-395 SPMMCQLQQF DLWVLRGVLN FGGETCPGLF LYTKVEDYSK WITSKAERAG ENSBTAP00000018804/1-327 NPMMCQLKEM SLWVLRGILS QGGEKCPGLF LYIRVEDYSD WITSKTRKTS ENSTTRP00000008012/1-394 NPMMCELKEL NLWVLRGILS QGGEKCPGLF LYIKVEDYSN WITSKTKKTS bmy_17220T0/1-378 NPMMCELKEL NLWVLRGILS QGGEKCPGLF LYIKVEDYSN WITSKTKKTS BACU001816/1-312 NPMMCELKEL NLWVLRGILS QGGEKCPGLF LYIKVEDYSN WITSKTKKTS 301 350 ENSP00000219301/1-395 PPLSSLHHWE KLISFSHHGP NATMTQKTYS D-SELGHVGS YLQGQRRTIT ENSBTAP00000018804/1-327 SPLSSFHHWE NPSPLPSYSS RDLVTQRKQA GLSQLVWPRL SFQEQES--- ENSTTRP00000008012/1-394 PPLSSFHHWK NLIPFPSHSS CDAVTQKKHA GLSQVGQSQP HFQGQKRATM bmy_17220T0/1-378 PPLSSFYHXE NPIPLPSHSS RDVVTQKKHA GLSQVGWSQP HFQGQKRATM BACU001816/1-312 PPLSSFHHWE NPIPFPSHSS RDVVTQKKHA GLSQVGRSQT HFQGQKRATV 351 400 ENSP00000219301/1-395 H--SRLGNSS RDSLDVREKD VKESGRSPEA SVQPLYYDYY GGEVGEGRIF ENSBTAP00000018804/1-327 ---SQWARGL PGTL-YHMKR LRT------- ---------- ---------- ENSTTRP00000008012/1-394 HSWSQMANGT PVSLDFREKG LRESDKS-EV VIQPTYYDDN GGEVGEGRSL bmy_17220T0/1-378 HSWSQMANGT PVSLDYREKG LRESDKS-EV AIQPMYYDYY GGEVGEGGSL BACU001816/1-312 HSWSQMANGT PVSLDFREKG LRESDKS-EV AIQPMYYDYY GGEVGEGRSL 401 450 ENSP00000219301/1-395 AGQNRLYQPE EIILVSFVLV FFCSSI-- ENSBTAP00000018804/1-327 ---------- ---------- -------- ENSTTRP00000008012/1-394 LGQNRLHQPQ EIILFFFVLV FFGNGI-- bmy_17220T0/1-378 SGQNRLHQPQ EIILFSFVLV FFGNGILV BACU001816/1-312 SGQNRLHQPQ EIILFFSVLV FFGNGVLV