KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:05:44 2014  Check: 00 ..

 Name: ENSP00000362108/1-198     Len:    202  Check:  4352  Weight:  1.00
 Name: ENSBTAP00000018806/1-200  Len:    202  Check:  72  Weight:  1.00
 Name: ENSTTRP00000015620/1-201  Len:    202  Check:  4296  Weight:  1.00
 Name: bmy_04080T0/1-199         Len:    202  Check:  8513  Weight:  1.00
 Name: BACU020448/1-192          Len:    202  Check:  4841  Weight:  1.00

//


                          1                                                   50
ENSP00000362108/1-198     -MPLGLLWLG LALLGALHAQ AQDSTSDLIP APPLSKVPLQ QNFQDNQFQG 
ENSBTAP00000018806/1-200  TMSVGLLWLG FTLLGALHTQ ARSSSSRLLR APPLSRIPLQ PNFQADQFQG 
ENSTTRP00000015620/1-201  -MPLGLLWLG LSLLGALHTQ AQDSTPNLIP APPLFRVPLQ PNFQPDQFQG 
bmy_04080T0/1-199         -MPLGLLWLG LSLLGPLHTQ AQDSTPNLIP APPLFRVPLQ PNFQADQFQG 
BACU020448/1-192          -MPLGLLWLG LSLLGALHTQ AQDSTPNLIP APPLFRVPLQ PNFQADQFQG 


                          51                                                 100
ENSP00000362108/1-198     KWYVVGLAGN AILREDKDPQ KMYATIYELK EDKSYNVTSV LFRKK--KCD 
ENSBTAP00000018806/1-200  KWYTVGVAGN AIKKEEQDPL KMYSSNYELK EDGSYNVTSI LLKDD--LCD 
ENSTTRP00000015620/1-201  KWYIVGLAGN AFKKEKQGQF KMYATTYELK EDRSYNVTSA LLRGKTQRCD 
bmy_04080T0/1-199         KWYIVGLAGN ALKKEEQGQF KMYATTYELK EDRSYNVTST LLRDE--RCD 
BACU020448/1-192          KWYIVGLAGN ALKKEEQGQF KMYATTYELK EDRSYNVTST LLRDE--RCD 


                          101                                                150
ENSP00000362108/1-198     YWIRTFVPGC QPGEFTLGNI KSYPGLTSYL VRVVSTNYNQ HAMVFFKKVS 
ENSBTAP00000018806/1-200  YWIRTFVPSS QPGQFTLGNI KSYRGIRSYT VRVVNTDYNQ FAIVYFKKVQ 
ENSTTRP00000015620/1-201  HWIRTFVPSS RPGQFTLGNI KGFPGVQSYT VRVATTNYNQ FAIVYFKKVY 
bmy_04080T0/1-199         HWIRTFVPSS RPGQFTLGNI KGFPGVQSYT VRVATTNYNQ FAIVYFKKVY 
BACU020448/1-192          HWIRTFVPSS QPGQFTLGNI KGFPGVQSYT VRVATTDYNQ FAIVYFKKVY 


                          151                                                200
ENSP00000362108/1-198     QNREYFKITL YGRTKELTSE LKENFIRFSK SLGLPENHIV FPVPIDQCID 
ENSBTAP00000018806/1-200  RKKTYFKITL YGRTKELTPE VRENFINFAK SLGLTDDHIV FTVPIDRCID 
ENSTTRP00000015620/1-201  KNQEYFKTTL YGRTKELTPQ LKENFIHFAK SLGLTDEYIL FPVPIDKCID 
bmy_04080T0/1-199         KNQEYFKTTL YGRTKELTPQ LKENFIHFAK SLGLTDEYIL FPVPIDQCID 
BACU020448/1-192          KNQEYFKTTL YGRTKELTPQ LKENFIHFAK SLGLTDEYIL FPVPI----- 


                          201                                                250
ENSP00000362108/1-198     G- 
ENSBTAP00000018806/1-200  DQ 
ENSTTRP00000015620/1-201  DQ 
bmy_04080T0/1-199         DQ 
BACU020448/1-192          --