KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:44 2014 Check: 00 .. Name: ENSTTRP00000008101/1-454 Len: 518 Check: 3399 Weight: 1.00 Name: ENSP00000356828/1-416 Len: 518 Check: 70 Weight: 1.00 Name: ENSBTAP00000018808/1-381 Len: 518 Check: 4399 Weight: 1.00 Name: bmy_11461T0/1-404 Len: 518 Check: 9305 Weight: 1.00 Name: BACU004243/1-379 Len: 518 Check: 249 Weight: 1.00 // 1 50 ENSTTRP00000008101/1-454 SPASLLPSPS PSSFLVLRRA RAARAVPQSA GRAPPTCAVP AAATRQAGAE ENSP00000356828/1-416 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018808/1-381 ---------- ---------- ---------- ---------- ---------- bmy_11461T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU004243/1-379 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008101/1-454 RRAGIASPGQ SERARPPPSR HLEDMEERPA ETNASVDDSA PPSVAQLAGR ENSP00000356828/1-416 ---------- ---------- ----MEERPA ETNANVDNSA SPSVAQLAGR ENSBTAP00000018808/1-381 ---------- ---------- ----MEERPA QTNAIVDDSA PPSVAQLAGR bmy_11461T0/1-404 ---------- ---------- ------ERPA ETNANVDDSA PPSVAQLAGR BACU004243/1-379 ---------- ---------- ------ERPA ETNANVDDSA PPSVAQLAGR 101 150 ENSTTRP00000008101/1-454 FREQAAAAK- TPASKPTRRK PPCSLSLFPP RVELGQNGEE KSPPNASHPP ENSP00000356828/1-416 FREQAAAAKE TPASKPTRRK PPCSLPLFPP KVDLGQNGEE KSPPNASHPP ENSBTAP00000018808/1-381 FREQAAAAKE TPASKPTRRK PPCSLPLFPS KVELGQNGEE KSLPSANHPP bmy_11461T0/1-404 FREQAAAAKE TPASKPTRRK PPCSLSLFPP RVELGQNGEE KSPPNANHPP BACU004243/1-379 FREQAAAAKE TPASKPTRRK PPCSLSLFPP RVELGQNGEE KSPPNANHPP 151 200 ENSTTRP00000008101/1-454 KVKVKSSPLI EKLQXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000356828/1-416 KFKVKSSPLI EKLQANLTFD PAALLPGASP KSPGLKAMVS PFHSPPSTPS ENSBTAP00000018808/1-381 KVKVKSSPLI EKLQANLVFD PAALLPGASP KSPGFKAMVS PFHSPPSTPS bmy_11461T0/1-404 KVKVKSSPLI EKLQANLVFD PAALLPGASP KSPGLKAMVS PFHSPPSTPS BACU004243/1-379 KVKVKSSPLI EKLQANLVFD PAALLPGASP KSPGLKAMVS PFHSPPSTPS 201 250 ENSTTRP00000008101/1-454 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXK RRPPSRRFRR ENSP00000356828/1-416 SPGVRSRPSE AEEVPVSFDQ PPEGSHLPCY NKVRTRGSIK RRPPSRRFRR ENSBTAP00000018808/1-381 SPGVRSRPSE PEEVPVSFDQ PPEGSHLPCY NKVRTRGSIK RRPPSRRFRR bmy_11461T0/1-404 SPGVRSRASE PEEVPVSFDQ PPEGSHLPSY NKVRTRGSIK RRPPSRRFRR BACU004243/1-379 SPGVRSRASE PEEVPVSFDQ PPEGSHLPSY NKVRTRGSIK RRPPSRRFRR 251 300 ENSTTRP00000008101/1-454 SQSEDCADLG GLRAEESSQE NGAKEENGDE VFPAKSKTPG SP-------- ENSP00000356828/1-416 SQS-DCGELG DFRAVESSQQ NGAKEEDGDE VLPSKSKAPG SPLSSEGAAG ENSBTAP00000018808/1-381 SQS-DCGELG EFRAVEPSQE NGAKEESGDE VFPAKSKAPG SP-------- bmy_11461T0/1-404 SQSEDCADLG ELRAMESSQE NGAKEENGDE VFLAKSKTPG SP-------- BACU004243/1-379 SQSEDCADLG ELRAVESSQE NGAKEENGDE VFLAKSKTPG SP-------- 301 350 ENSTTRP00000008101/1-454 ---------- --PLRRTPSW TEKQEEKGRA LRVAQQHEKA VGSSEEGASQ ENSP00000356828/1-416 EGVRTLGPAE KPPLRRSPSR TEKQEED-RA TEEAKNGEKA RRSSEEVDGQ ENSBTAP00000018808/1-381 ---------- --PLRRTSSR TEKLEEKSRA VGEAQEPEKI AGGSEEGAGQ bmy_11461T0/1-404 ---------- --PLRRTPSR TEKQEEKGRA LRVAQQHEKA VGSSEEGASQ BACU004243/1-379 ---------- --PLRRTPSR TEKQEEKGRA LRVAQQHEKA VGSSEEGASQ 351 400 ENSTTRP00000008101/1-454 RPA------- -RASSPEAED GGGSPTEEKP AEG--QMEEP TEVK-ERAAS ENSP00000356828/1-416 HPAQEEVPES PQTSGPEAEN RCGSPREEKP AGEEAEMEKA TEVKGERVQN ENSBTAP00000018808/1-381 HPA------- -RASSSEAED GCGSPKEERP AGE--QAEEP TEVK-ERVAS bmy_11461T0/1-404 RPA------- -RASSPEAED GGGSPTKEKP AEE--QTAEP AAVK-ERAAG BACU004243/1-379 RPA------- -RASSPEAED GGGSPTEEKP AEE--QTEEP AEVK-ERAAG 401 450 ENSTTRP00000008101/1-454 EEEEPEQSSR DTEGLEEGAL GEETPQSPPG GGEGDHSSEQ GAGKEKQDDG ENSP00000356828/1-416 EEVGPEHDSQ ETKKLEEGAA VKETPHSPPG GVKGGDVPKQ EKGKEKQQEG ENSBTAP00000018808/1-381 EEEEPRQSSQ DTKELEEGAV EEEPPQPPPG GGAGGHSPEQ GTSEEKQDEG bmy_11461T0/1-404 EEAEPGQRSR DTKGLEEGAV GEETPQNPPG GGEGDHSPEQ GAGKEKHDEG BACU004243/1-379 EGAEPGQRSR DTKGLEEGAV GDETPQNPAG GGEGDHSPEQ GAGKEKHDEG 451 500 ENSTTRP00000008101/1-454 TILEPGCDPV TD-HAQPDTS SE------VP KTEDNT---- ---------- ENSP00000356828/1-416 AVLEPGCSPQ TG-PAQLETS SEVQSEPAVP KPEDDT---- ---------- ENSBTAP00000018808/1-381 ASLKPGCSPN SGAHAQPDTS SE------VP RTEDNT---- ---------- bmy_11461T0/1-404 TILEPGCDPG TG-HAQLDAS SE------VP KTEVGGLACP PDPDGAGPAH BACU004243/1-379 TILEPGCDPG TG-HAQPDAS SE------VP KTEDNT---- ---------- 501 550 ENSTTRP00000008101/1-454 PVQDTKM--- -------- ENSP00000356828/1-416 PVQDTKM--- -------- ENSBTAP00000018808/1-381 PVQDTKM--- -------- bmy_11461T0/1-404 PMSHALFLTS ITNQLGVQ BACU004243/1-379 PVQDTKM--- --------