KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:49 2014 Check: 00 .. Name: ENSP00000274963/1-655 Len: 713 Check: 1854 Weight: 1.00 Name: ENSBTAP00000018834/1-656 Len: 713 Check: 4966 Weight: 1.00 Name: ENSTTRP00000001846/1-687 Len: 713 Check: 6971 Weight: 1.00 Name: bmy_05866T0/1-612 Len: 713 Check: 4295 Weight: 1.00 Name: BACU018025/1-638 Len: 713 Check: 4333 Weight: 1.00 // 1 50 ENSP00000274963/1-655 ---------- -------MKG ASE--EKLAS VSNLVTVFEN SRTPEAAPRG ENSBTAP00000018834/1-656 ---------- -------MEG ASE--ETLTS VSSLVTVFEN SRMTGAVPRV ENSTTRP00000001846/1-687 ---------- -------MEG ASK--EKLSS VSSLATAFEN IRTPGAAPRV bmy_05866T0/1-612 ---------- ---------M GSE--EVLSG ---------- -GTPGAAPRV BACU018025/1-638 MGPLHPGETW CVTVSTVLSA GSERIKCLVG ILLYHPPLGG ERTPGAASRV 51 100 ENSP00000274963/1-655 QRLEDVHHRP ECRPPESPGP REKTNVGEAV GSEPRTVSRR YLNSLKNKLS ENSBTAP00000018834/1-656 HGLEAGHQQP GCRAPTSAGP WEKPTVEEAL ESGSRTVSRR YLSSLKNKLS ENSTTRP00000001846/1-687 HGLEAGHHHP GCRPPSPTGP WDKPTVEEAV DSGPRTVSRR YLSSLKNKLS bmy_05866T0/1-612 HGLEAGHHHP GCRPPSPTGP WDKPTVEEAV ESGPRTVSRR YLSSLKNKLS BACU018025/1-638 HGLEAGHHHP GCRPPSPTGP WDKPTVEEAV DSGPRTVSRR YLSSLKNKLS 101 150 ENSP00000274963/1-655 SEAWRKSCQP VTLSGSGTQE P-EKKIVQEL LETEQAYVAR LHLLDQ---- ENSBTAP00000018834/1-656 SGAWRKSYQP RTCPGSGTQE PEEKKIVREL LETEQAYVAR LHLLDQ---- ENSTTRP00000001846/1-687 SRDWRKSCQA RTCPGPGTQE PEEKRIVQEL LETEQAYVAR LHLLDQAMTQ bmy_05866T0/1-612 SRDWRKSCQA RTCPGPGT-- ---------- ---------- ---------- BACU018025/1-638 SRDWRKSCQA RTCPGPGTQE PEEKRIVQEL LETEQAYVAR LHLLDQ---- 151 200 ENSP00000274963/1-655 ---VFFQELL KTARSSKAFP EDVVRVIFSN ISSIYQFHSQ FFLPELQRRL ENSBTAP00000018834/1-656 ---VFFQELL KEARSSKAFP EDVVRLIFSN ISSIYQFHSQ FFLPELQRRL ENSTTRP00000001846/1-687 LRLVFFQELL KEARSSKAFP EDVVRLIFSN TASIYQFHAQ FFLPELQQRL bmy_05866T0/1-612 ------QELL KEARSSKAFP EDVVRLIFSN TSSIYQFHAQ FFLPELQRRL BACU018025/1-638 ---VFFQELL KEARSSKAFP EDVVRLIFSN TSSIYQFHAQ FFLPELQRRL 201 250 ENSP00000274963/1-655 DDWTANPRIG DVIQKLAPFL KMYSEYVKNF ERAAELLATW TDKSPLFQEV ENSBTAP00000018834/1-656 DDWTTTPRIG DVIQKLAPFL KMYSEYVKNF ERAIELLATW TDKSPPFQEV ENSTTRP00000001846/1-687 DNWTTTPRIG DVIQKLAPFL KMYSEYVKNF ERAAELLATW SDKSPPFQEV bmy_05866T0/1-612 DDWTTTPRIG DVIQKLAPFL KMYSEYVKNF ERAAELLATW TDKSPPFQEV BACU018025/1-638 DDWTTTPRIG DVIQKLAPFL KMYSEYVKNF ERAAELLATW TDKSPPFQEV 251 300 ENSP00000274963/1-655 LTRIQSSEAS GSLTLQHHML EPVQRIPRYE LLLKEYIQKL PAQAPDQADA ENSBTAP00000018834/1-656 ITRIQSSEAS ASLTLQHHML EPVQRIPRYE LLLKEYVQKL PGQAPDLADA ENSTTRP00000001846/1-687 ITRIQSSEAS GSLTLQHHML EPVQRIPRYE LLLKEYVQKL PAQAPDLADA bmy_05866T0/1-612 ITRIQSSEAS GSLTLQHHML EPVQRIPRYE LLLKEYVQKL PAQAPDLADA BACU018025/1-638 ITRIQSSEAS GSLTLQHHML EPVQRIPRYE LLLKEYVQKL PAQAPDLADA 301 350 ENSP00000274963/1-655 QKALDMIFSA AQHSNAAITE MERLQDLWEV YQRLGLEDDI VDPSNTLLRE ENSBTAP00000018834/1-656 QKALDMIFSA AQHSNAAITE MERLQELWDV YQRLGLEDDI VDPSNTLLRE ENSTTRP00000001846/1-687 QKALDMIFSA AQHSNAAITE MERLQELWEV YQRLGLEDDL VDPSNTLLRE bmy_05866T0/1-612 QKALDMIFSA AQHSNAAITE MERLQELWEV YQRLGLEDDI VDPSNTLLRE BACU018025/1-638 QKALDMIFSA AQHSNAAITE MERLQELWEV YQRLGLEDDI VDPSNTLLRE 351 400 ENSP00000274963/1-655 GPVLKISFRR NDPMERYLFL FNNMLLYCVP RVIQVGAQFQ VRTRIDVAGM ENSBTAP00000018834/1-656 GPVLKISFRR SGPMERYLFL FNNMLLYCVP RVIQVGAHFQ VRTRIDVAGM ENSTTRP00000001846/1-687 GPVLKISFRR IGPMERYLFL FNNMLLYCVP RVIQVGAQFQ VRTRIDVASM bmy_05866T0/1-612 GPVLKISFRR IGPMERYLFL FNNMLLYCVP RVIQVGAQFQ VRTRIDVASM BACU018025/1-638 GPVLKISFRR IGPMERYLFL FNNMLLYCMP RVIQVGAQFQ VRTRIDVASM 401 450 ENSP00000274963/1-655 KV-------- ---------- ---------- ---RELMDAE FPHSFLVSGK ENSBTAP00000018834/1-656 KV-------- ---------- ---------- ---RELTDAE FPHSFLVSGK ENSTTRP00000001846/1-687 KMYSNLFSQS STDRHLDCSL LSVSANETAV NNCRRLTDAE L--HFLWSGK bmy_05866T0/1-612 KV-------- ---------- ---------- ---RELTDAE FPHSFLVSGK BACU018025/1-638 K--------- ---------- ---------- ---------- ---------- 451 500 ENSP00000274963/1-655 QRTLELQARS QEEMISWMQA FQAAIDQIEK RNETFKAAAQ GPEGDIQEQE ENSBTAP00000018834/1-656 QRTLELRARS QEEMISWLQA CQAAIDQIEK RNETFKAAVQ SPEGDPQEQE ENSTTRP00000001846/1-687 QRTL-LRARS QEEMISWLQA CQAAIDQIEK RNETFKAAVQ SPEGDTQEQE bmy_05866T0/1-612 QRTLELRARS QEEMISWLQA CQAAIDQIEK RNETFKAAVQ SPEGDTQEQE BACU018025/1-638 ---------- ---------A CQAAIDQIEK RNETFKAAVQ SPEGDTQEQE 501 550 ENSP00000274963/1-655 LQSEELGLRA PQWVRDKMVT MCMRCQEPFN ALTRRRHHCR ACGYVVCARC ENSBTAP00000018834/1-656 LQSVELGLRA PQWVRDKMVT MCMRCQEPFN ALTRRRHHCR ACGYVVCARC ENSTTRP00000001846/1-687 XXXEELGLRA -QWVRD-MVT MCMRCQEPFN -LMRRRHHCR -CGYVVCARC bmy_05866T0/1-612 LQSEELGLRA PQWVRDKMVT MCMRCQEPFN ALMRRRHHCR ACGYVVCARC BACU018025/1-638 LQSEELGLRA PQWVRDKMVT MCMRCQEPFN ALMRRRHHCR ACGYVVCARC 551 600 ENSP00000274963/1-655 SDYRAELKYD DNRPNRVCLH CYAFLTGNVL PEAKEDKRRG ILEKGSSATP ENSBTAP00000018834/1-656 SDYRAELKYD ANRPNRVCLD CYTFLTGNVL PEEKEDKRRG ILEKGAVAGS ENSTTRP00000001846/1-687 SDYRAELKYD DNRPSRVCLD CYTFLTGNVL PEDKEDKRRG ILEKGAAAGS bmy_05866T0/1-612 SDYRAELKYD DNRPNRVCLD CYTFLTGNVL PEDKEDKRRG ILEKGAAAGS BACU018025/1-638 SDYRAELKYD DNRPNRVCLD CYTFLTGNVL PEDKEDKRRG ILEKGAAAGS 601 650 ENSP00000274963/1-655 DQSLMCSFLQ LIGDKWGKSG PRGWCVIPRD DPLVLYVYAA PQDMRAHTSI ENSBTAP00000018834/1-656 EQSLICSFLQ LLGDKWGKSG PRGWCVIPRD DPLVLYVYAA PQDMRAHTSI ENSTTRP00000001846/1-687 EQSLMCSFLQ LFGDKWGKSG SRGWCVIPRD DPLVLYVYAA PQDMRAHTSI bmy_05866T0/1-612 EQSLMCSFLQ LLGDKWGKSG SRGWCVIPRD DPLVLYVYAA PQDMRAHTSI BACU018025/1-638 EQSLMCSFLQ LLGDKWGKSG SRGWCVIPRD DPLVLYVYAA PQDMRAHTSI 651 700 ENSP00000274963/1-655 PLLGYQVTVG PQGDPRVFQL QQSGQLYTFK AETEELKGRW VKAMERAASG ENSBTAP00000018834/1-656 PLLGYQVTAG PQADPRVFQL QQSGQLYTFK AESEELKGRW VKAMERAASG ENSTTRP00000001846/1-687 PLLGYQVTAG PQADPRVFQL QQSGQLYTFK AETEELKDRW VKAMERAASS bmy_05866T0/1-612 PLLGYQVTTG PQADPRVFQL QQSGQLYTFK AETEELKDRW VKAMERAASG BACU018025/1-638 PLLGYQVTTG PQADPRVFQL QQSGQLYTFK AETEELKDRW VKAMERAASG 701 750 ENSP00000274963/1-655 WSPSWPNDGD LSD ENSBTAP00000018834/1-656 WIPGGPDDKD LSD ENSTTRP00000001846/1-687 LSPGGPNDRD LSD bmy_05866T0/1-612 WSPGEPNDRD LSD BACU018025/1-638 WSPGEPNDRD LSD