KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:51 2014 Check: 00 .. Name: ENSTTRP00000000455/1-1116 Len: 1347 Check: 9270 Weight: 1.00 Name: ENSP00000387694/1-1139 Len: 1347 Check: 9987 Weight: 1.00 Name: ENSBTAP00000018852/1-1169 Len: 1347 Check: 5190 Weight: 1.00 Name: bmy_06250T0/1-1204 Len: 1347 Check: 7847 Weight: 1.00 Name: BACU011370/1-1185 Len: 1347 Check: 6929 Weight: 1.00 // 1 50 ENSTTRP00000000455/1-1116 ---------- ---------- ---------- ---------- ---------- ENSP00000387694/1-1139 ---------- ---------- ---------- MSRRFTVTSL PPAGPARSPD ENSBTAP00000018852/1-1169 VRVCVRRAGG HCSFFLRGAE SERARASERA AKAGRGARAR RRSHPRARRR bmy_06250T0/1-1204 ---------- ---------- ---------- ---------- ---------- BACU011370/1-1185 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000455/1-1116 ---MLNNLTD CEDGDGGANP GDGNPKESSP FINSTDTEKG KEYDGKNMAL ENSP00000387694/1-1139 PESRRHSVAD PRHLPGEDVK GDGNPKESSP FINSTDTEKG KEYDGKNMAL ENSBTAP00000018852/1-1169 AATMLNNLTD CEDGDGGANP GDGNPKESSP FINSTDTEKG KEYDGKNMAL bmy_06250T0/1-1204 ---MLNNLTD CEDGDGGANP GDGNPKESSP FINSTDTEKG KEYDGKNMAL BACU011370/1-1185 ---MLNNLTD CEDGDGGANP GDGNPKESSP FINSTDTEKG KEYDGKNMAL 101 150 ENSTTRP00000000455/1-1116 FEEEMDTSPM VSSLLSGLAN YTNLPQGSRE HEEAENNEGG KKKPVQXXXX ENSP00000387694/1-1139 FEEEMDTSPM VSSLLSGLAN YTNLPQGSRE HEEAENNEGG KKKPVQAPRM ENSBTAP00000018852/1-1169 FEEEMDTSPM VSSLLSGLAN YTNLPQGSRE HEEAENNEGG KKKPVQAPRM bmy_06250T0/1-1204 FEEEMDTSPM VSSLLSGLAN YTNLPQGSRE HEEAENNEGG KKKPVQAPRM BACU011370/1-1185 FEEEMDTSPM VSSLLSGLAN YTNLPQGSRE HEEAENNEGG KKKPVQAPRM 151 200 ENSTTRP00000000455/1-1116 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXTMLTA ENSP00000387694/1-1139 GTFMGVYLPC LQNIFGVILF LRLTWVVGIA GIMESFCMVF ICCSCTMLTA ENSBTAP00000018852/1-1169 GTFMGVYLPC LQNIFGVILF LRLTWVVGIA GIIEAFCMVF ICCSCTMLTA bmy_06250T0/1-1204 GTFMGVYLPC LQNIFGVILF LRLTWVVGIA GIMESFCMVF ICCSCTMLTA BACU011370/1-1185 GTFMGVYLPC LQNIFGVILF LRLTWVVGIA GIMESFCMVF ICCSCTMLTA 201 250 ENSTTRP00000000455/1-1116 ISMSAIATNG VVPAGGSYYM ISRSLGPEFG GAVGLCFYLG TTFAGAMYIL ENSP00000387694/1-1139 ISMSAIATNG VVPAGGSYYM ISRSLGPEFG GAVGLCFYLG TTFAGAMYIL ENSBTAP00000018852/1-1169 ISMSAIATNG VVPAGGSYYM ISRSLGPEFG GAVGLCFYLG TTFAGAMYIL bmy_06250T0/1-1204 ISMSAIATNG VVPAGGSYYM ISRSLGPEFG GAVGLCFYLG TTFAGAMYIL BACU011370/1-1185 ISMSAIATNG VVPAGGSYYM ISRSLGPEFG GAVGLCFYLG TTFAGAMYIL 251 300 ENSTTRP00000000455/1-1116 GTIEILLAYL FPAMAIFKAE DASGEAAAML NNMRVYGTCV LTCMATVVFV ENSP00000387694/1-1139 GTIEILLAYL FPAMAIFKAE DASGEAAAML NNMRVYGTCV LTCMATVVFV ENSBTAP00000018852/1-1169 GTIEILLAYL FPAMAIFKAE DASGEAAAML NNMRVYGTCV LTCMATVVFV bmy_06250T0/1-1204 GTIEILL--- --------AE DASGEAAAML NNMRVYGTCV LTCMATVVFV BACU011370/1-1185 GTIEILLAYL FPAMAIFKAE DASGEAAALM NNMRVYGTCV LTCMATVVFV 301 350 ENSTTRP00000000455/1-1116 GVKYVNKFAL VFLGCVILSI LAIYAGVIKS AFDPPNFPIC LLGNRTLSRH ENSP00000387694/1-1139 GVKYVNKFAL VFLGCVILSI LAIYAGVIKS AFDPPNFPIC LLGNRTLSRH ENSBTAP00000018852/1-1169 GVKYVNKFAL VFLGCVILSI LAIYAGVIKS AFDPPNFPIC LLGNRTLSRH bmy_06250T0/1-1204 GVKYVNKFAL VFLGCVILSI LAIYAG---- ---------- ---------- BACU011370/1-1185 GVKYVNKFAL VFLGCVILSI LAIYAGVIKS AFDPPNFPIC LLGNRTLSRH 351 400 ENSTTRP00000000455/1-1116 GFDVCAKLAW EGNETVTTRL WGLFCSSRFL NATCDEYFTR NNVTEIQG-- ENSP00000387694/1-1139 GFDVCAKLAW EGNETVTTRL WGLFCSSRFL NATCDEYFTR NNVTEIQG-- ENSBTAP00000018852/1-1169 GFDVCAKLAW EGNETVTTRL WGLFCSSRFL NATCDEYFMR NNVTEIQG-- bmy_06250T0/1-1204 -------LAW EGNETVTTRL WGLFCSSRFL NATCDEYFTR NNVTEIQG-- BACU011370/1-1185 GFDVCAKLAW EGNETVTTQL WGLFCSSRFL NATCDEYFTR NNVTEIQGIX 401 450 ENSTTRP00000000455/1-1116 --IPGAASGL IKENLWSSYL TKGVIVERRG MPSVGLGDGT PVDMDHPYVF ENSP00000387694/1-1139 --IPGAASGL IKENLWSSYL TKGVIVERSG MTSVGLADGT PIDMDHPYVF ENSBTAP00000018852/1-1169 --IPGAASGL IKENLWSSYL TKGVIVERRG MPSAGLADGT PIDMDHPYVF bmy_06250T0/1-1204 --IPGAASGL IKENLWSSYL XKGVIVERRG MPSVGLADGT PVDMDHPYVF BACU011370/1-1185 XXIPGAASGL IKENLWSSYL TKGVIVERRG MPSVGLADGT PVDMDHPYVF 451 500 ENSTTRP00000000455/1-1116 SDMTSYFTLL VGIYFPSVTG IMAGSNRSGD LRDAQKSIPT GTILAIATTS ENSP00000387694/1-1139 SDMTSYFTLL VGIYFPSVTG IMAGSNRSGD LRDAQKSIPT GTILAIATTS ENSBTAP00000018852/1-1169 SDMTSYFTLL VGIYFPSVTG IMAGSNRSGD LRDAQKSIPT GTILAIATTS bmy_06250T0/1-1204 SDMTSYFTLL VGIYFPSVTD ---------- ---------- ---------- BACU011370/1-1185 SDMTSYFTLL VGIYFPSVTG IMAGSNRSGD LRDAQKSIPT GTILAIATTS 501 550 ENSTTRP00000000455/1-1116 AVYISSVVLF GACIEGVVLR DKFGEAVNGN LVVGTLAWPS PWVIVIGSFF ENSP00000387694/1-1139 AVYISSVVLF GACIEGVVLR DKFGEAVNGN LVVGTLAWPS PWVIVIGSFF ENSBTAP00000018852/1-1169 AVYISSVVLF GACIEGVVLR DKFGEAVNGN LVVGTLAWPS PWVIVIGSFF bmy_06250T0/1-1204 ---ISSVVLF GACIEGVVLR DKFGEAVNGN LVVGTLAWPS PWVIVIGSFF BACU011370/1-1185 AVYISSVVLF GACIEGVVLR DKFGEAVNGN LVVGTLAWPS PWVIVIGSFF 551 600 ENSTTRP00000000455/1-1116 STCGAGLQSL TGAPRLLQAI SRDGIVPFLQ VFGHGKANGE PTWALLLTAC ENSP00000387694/1-1139 STCGAGLQSL TGAPRLLQAI SRDGIVPFLQ VFGHGKANGE PTWALLLTAC ENSBTAP00000018852/1-1169 STCGAGLQSL TGAPRLLQAI SRDGIVPFLQ VFGHGKANGE PTWALLLTAC bmy_06250T0/1-1204 STCGAGLQSL TGAPRLLQAI SRDGIVPFLQ VFGHGKANGE PTWALLLTAC BACU011370/1-1185 STCGAGLQSL TGAPRLLQAI SRDGIVPFLQ VFGHGKANGE PTWALLLTAC 601 650 ENSTTRP00000000455/1-1116 ICEIGILIAS LDEVAPILSM FFLMCYMFVN LACAVQTLLR TPNWRPRFRY ENSP00000387694/1-1139 ICEIGILIAS LDEVAPILSM FFLMCYMFVN LACAVQTLLR TPNWRPRFRY ENSBTAP00000018852/1-1169 ICEIGILIAS LDEVAPILSM FFLMCYMFVN LACAVQTLLR TPNWRPRFRY bmy_06250T0/1-1204 ICEIGILIAS LDEVAPILSM FFLMCYMFVN LACAVQTLLR TPNWRPRFRY BACU011370/1-1185 ICEIGILIAS LDEVAPILSM FFLMCYMFVN LACAVQTLLR TPNWRPRFRY 651 700 ENSTTRP00000000455/1-1116 YHWTLSFLGM SLCLALMFIC SWYYALVAML IAGLIYKYIE YRGAEKEWGD ENSP00000387694/1-1139 YHWTLSFLGM SLCLALMFIC SWYYALVAML IAGLIYKYIE YRGAEKEWGD ENSBTAP00000018852/1-1169 YHWTLSFLGM SLCLALMFIC SWYYALVAML IAGLIYKYIE YRGAEKEWGD bmy_06250T0/1-1204 YHWTLSFLGM SLCLALMFIC SWYYALVAML IAGLIYKYIE YRGAEKEWGD BACU011370/1-1185 YHWTLSFLGM SLCLALMFIC SWYYALVAML IAGLIYKYIE YRGAEKEWGD 701 750 ENSTTRP00000000455/1-1116 GIRGLSLSAA RYALLRLEEG PPHTKNWRPQ LLVLVRVDQD QNVAHPQLLS ENSP00000387694/1-1139 GIRGLSLSAA RYALLRLEEG PPHTKNWRPQ LLVLVRVDQD QNVVHPQLLS ENSBTAP00000018852/1-1169 GIRGLSLSAA RYALLRLEEG PPHTKNWRPQ LLVLVRVDQD QNVVHPQLLS bmy_06250T0/1-1204 GIRGLSLSAA RYALLRLEEG PPHTKNWRPQ LLVLVRVDQD QNVVHPQLLS BACU011370/1-1185 GIRGLSLSAA RYALLRLEEG PPHTKNWRPQ LLVLVRVDQD QNVVHPQLLS 751 800 ENSTTRP00000000455/1-1116 LTSQLKAGKG LTIVGSVLEG TFLDNHPQAQ RAEESIRRLM EAEKVKGFCQ ENSP00000387694/1-1139 LTSQLKAGKG LTIVGSVLEG TFLENHPQAQ RAEESIRRLM EAEKVKGFCQ ENSBTAP00000018852/1-1169 LTSQLKAGKG LTIVGSVLEG TFLDNHPQAQ RAEESIRRLM EAEKVKGFCQ bmy_06250T0/1-1204 LTSQLKAGKG LTIVGSVLEG TFLDNHPQAQ RAEESIRRLM EAEKVKGFCQ BACU011370/1-1185 LTSQLKAGKG LTIVGSVLEG TFLDNHPQAQ RAEESIRRLM EAEKVKGFCQ 801 850 ENSTTRP00000000455/1-1116 VVISSNLRDG VSHLIQSGGL GGLQHNTVLV GWPRNWRQKE AHQTWRNFIE ENSP00000387694/1-1139 VVISSNLRDG VSHLIQSGGL GGLQHNTVLV GWPRNWRQKE DHQTWRNFIE ENSBTAP00000018852/1-1169 VVISSNLRDG VSHLIQSGGL GGLQHNTVLV GWPRNWRQKE DHQTWRNFIE bmy_06250T0/1-1204 VVISSNLRDG VSHLIQSGGL GGLQHNTVLV GWPRNWRQKE DHQTWRNFIE BACU011370/1-1185 VVISSNLRDG VSHLIQSGGL GGLQHNTVLV GWPRNWRQKE DHQTWRNFIE 851 900 ENSTTRP00000000455/1-1116 LVRETTAGHL ALLVTKNVSM FPGNPERFSE GSIDVWWIVH DGGMLMLLPF ENSP00000387694/1-1139 LVRETTAGHL ALLVTKNVSM FPGNPERFSE GSIDVWWIVH DGGMLMLLPF ENSBTAP00000018852/1-1169 LVRETTAGHL ALLVTKNVSM FPGNPERFSE GSIDVWWIVH DGGMLMLLPF bmy_06250T0/1-1204 LVRETTAGHL ALLVTKNVSM FPGNPERFSE GSIDVWWIVH DGGMLMLLPF BACU011370/1-1185 LVRETTAGHL ALLVTKNVSM FPGNPERFSE GSIDVWWIVH DGGMLMLLPF 901 950 ENSTTRP00000000455/1-1116 LLRHHKVWRK CKMRIFTVAQ MDDNSIQMKK DLTTFLYHLR ITAEVEVVEM ENSP00000387694/1-1139 LLRHHKVWRK CKMRIFTVAQ MDDNSIQMKK DLTTFLYHLR ITAEVEVVEM ENSBTAP00000018852/1-1169 LLRHHKVWRK CKMRIFTVAQ MDDNSIQMKK DLTTFLYHLR ITAEVEVVEM bmy_06250T0/1-1204 LLRHHKVWRK CKMRIFTVAQ MDDNSIQMKK DLTTFLYHLR ITAEVEVVEM BACU011370/1-1185 LLRHHKVWRK CKMRIFTVAQ MDDNSIQMKK DLTTFLYHLR ITAEVEVVEM 951 1000 ENSTTRP00000000455/1-1116 HESDISAYTY EKTLVMEQRS QILKQMHLTK NEREREIQSI TDESRGSIRR ENSP00000387694/1-1139 HESDISAYTY EKTLVMEQRS QILKQMHLTK NEREREIQSI TDESRGSIRR ENSBTAP00000018852/1-1169 HESDISAYTY EKTLVMEQRS QILKQMHLTK NEREREIQSI TDESRGSIRR bmy_06250T0/1-1204 HESDISAYTY EKTLVMEQRS QILKQMHLTK NEREREIQSI TDESRGSIRR BACU011370/1-1185 HESDISAYTY EKTLVMEQRS QILKQMHLTK NEREREIQSI TDESRGSIRR 1001 1050 ENSTTRP00000000455/1-1116 KNPANTRLRL NVPEETAGDS EEKPEEEVQL IHDQSAPSCP SSSPSPGEEP ENSP00000387694/1-1139 KNPANTRLRL NVPEETAGDS EEKPEEEVQL IHDQSAPSCP SSSPSPGEEP ENSBTAP00000018852/1-1169 KNPANTRLRL NVPEETAGDS EEKPEEEVQL IHDQSAPSCP SSSPSPGEEP bmy_06250T0/1-1204 KNPANTRLRL NVPEETAGDS EEKPEEEVQL IHDQSAPSCP SSSPSPGEEP BACU011370/1-1185 KNPANTRLRL NVPEETAGDS EEKPEEEVQL IHDQSAPSCP SSSPSPGEEP 1051 1100 ENSTTRP00000000455/1-1116 EREGEADPEK VHLTWTKDKS VAEKNKGPSP VSSEGIKDFF SMKPEWENLN ENSP00000387694/1-1139 EGEGETDPEK VHLTWTKDKS VAEKNKGPSP VSSEGIKDFF SMKPEWENLN ENSBTAP00000018852/1-1169 EVEGEADPEK VHLTWTKDKS VAEKNKGPSP VSSEGIKDFF SMKPEWENLN bmy_06250T0/1-1204 EREGEADPEK VHLTWTKDKS VAEKNKGPSP VSSEGIKDFF SMKP-----N BACU011370/1-1185 EREGEADPEK VHLTWTKDKS VAEKNKGPSP VSSEGIKDFF SMKP-----N 1101 1150 ENSTTRP00000000455/1-1116 QSNVRRMHTA VRLNEVIVKK SRDAKLVLLN MPGPPRNRNG DENYMEFLEV ENSP00000387694/1-1139 QSNVRRMHTA VRLNEVIVKK SRDAKLVLLN MPGPPRNRNG DENYMEFLEV ENSBTAP00000018852/1-1169 QSNVRRMHTA VRLNEVIVKK SQDAKLVLLN MPGPPRNRNG DENYMEFLEV bmy_06250T0/1-1204 QSNVRRMHTA VRLNEVIVKK SRDAKLVLLN MPGPPRNRNG DENYMEFLEV BACU011370/1-1185 QSNVRRMHTA VRLNEVIVKK SRDAKLVLLN MPGPPRNRNG DENC------ 1151 1200 ENSTTRP00000000455/1-1116 LTEHLDRVML VRGGGR---- ---------- ---------- ---------- ENSP00000387694/1-1139 LTEHLDRVML VRGGGR---- ---------- ---------- ---------- ENSBTAP00000018852/1-1169 LTERLDRVML VRGGGR---- ---------- ---------- ---------- bmy_06250T0/1-1204 LTEHLDRVML VRGGGREKRN GLLATVELSR WGRPGKAEAS GGWVFLDVRE BACU011370/1-1185 -------ILG LKLGGR---- --------GR W--------- ---------- 1201 1250 ENSTTRP00000000455/1-1116 ---------- ---------- ---------- ---------- ---------- ENSP00000387694/1-1139 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018852/1-1169 ---------- ---------- ---------- ---------- ---------- bmy_06250T0/1-1204 FESKSALGPG GSRGPSTPPR RLLTLSAR-- ----PWLPTL PSSSSRRRSE BACU011370/1-1185 --TSGDLGPG PGKEELSPVC FRISTADRDA SPAFPWLPTR TTLI------ 1251 1300 ENSTTRP00000000455/1-1116 ---------- ---------- ---------- ---------- ---------- ENSP00000387694/1-1139 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018852/1-1169 ---------- ---------- ---------- ---------- ---------- bmy_06250T0/1-1204 TSVQLFLDSP PSGVSFHCGC RGGRSLFSSA LMQAGARIGE GRSSRKRNRE BACU011370/1-1185 ---------- PSG------- -GKGTVF--- -------LLD GRSDMEF--- 1301 1350 ENSTTRP00000000455/1-1116 ---------- ---------- ---------- ---------E VITIYS- ENSP00000387694/1-1139 ---------- ---------- ---------- ---------E VITIYS- ENSBTAP00000018852/1-1169 ---------- ---------- ---------- ---------E VITIYS- bmy_06250T0/1-1204 RPSPHRGSPA PPKAELELVP PRLGQVWLET PVCTKCNKNN FIIPFTA BACU011370/1-1185 ---------- -----LEVLT EHLDRVML-- ---VRGGGRE VITIYS-