KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:52 2014 Check: 00 .. Name: BACU001018/1-1054 Len: 1402 Check: 9186 Weight: 1.00 Name: ENSTTRP00000004958/1-993 Len: 1402 Check: 1350 Weight: 1.00 Name: bmy_18948T0/1-582 Len: 1402 Check: 6723 Weight: 1.00 Name: ENSP00000453872/1-995 Len: 1402 Check: 9905 Weight: 1.00 Name: ENSBTAP00000018858/1-994 Len: 1402 Check: 967 Weight: 1.00 // 1 50 BACU001018/1-1054 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004958/1-993 ---------- ---------- ----MSQWTP EYNKLYTLKV DMKSEIPSDA bmy_18948T0/1-582 MKGPLQPKRT DWGKDKLRPS LKFPMSQWTP EYNKLYTLKV DMK------- ENSP00000453872/1-995 ---------- ---------- ----MSQWTP EYNELYTLKV DMKSEIPSDA ENSBTAP00000018858/1-994 ---------- ---------- ----MSQWTP EYNKLYTLKV DMKSEIPSDA 51 100 BACU001018/1-1054 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004958/1-993 PKTQESLKGI LLHPEPIGAA RSFPAGVEMI NNKVGNEFSH LCDDSQKQEK bmy_18948T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000453872/1-995 PKTQESLKGI LLHPEPIGAA KSFPAGVEMI NSKVGNEFSH LCDDSQKQEK ENSBTAP00000018858/1-994 PKTQESLKGI LLHPEPIGAA KSFPAGVEMI NSKVGNEFSH LCDDSQKQEK 101 150 BACU001018/1-1054 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004958/1-993 DMNGNQQEQE KSVVVRKKRK SQQAGPSYMQ NCAKENQGIL GLRQHLETPS bmy_18948T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000453872/1-995 EMNGNQQEQE KSLVVRKKRK SQQAGPSYVQ NCVKENQGIL GLRQHLGTPS ENSBTAP00000018858/1-994 DMNGNQQEQE KSVVVRKKRK SQQAGPSYMQ NCAKENQGIL GLRQHLETPS 151 200 BACU001018/1-1054 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004958/1-993 DEDNDSSFSD CLSSPSSSLH FGDSDTVTSD EDKEVSVRHS QAILSAKSRT bmy_18948T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000453872/1-995 DEDNDSSFSD CLSSPSSSLH FGDSDTVTSD EDKEVSVRHS QTILNAKSRS ENSBTAP00000018858/1-994 DEDNDSSFSD CLSSPSSSLH FGDSDTVTSD EDKEVSVRHS QAILSAKSRT 201 250 BACU001018/1-1054 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004958/1-993 HSARSHKWPR TETESVSGLL MKRPCFHSSS LRRLPCRKRF VKNNSSQRTQ bmy_18948T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000453872/1-995 HSARSHKWPR TETESVSGLL MKRPCLHGSS LRRLPCRKRF VKNNSSQRTQ ENSBTAP00000018858/1-994 HSSRSHKWPR TETESVSGLL MKRPCFHSSS LRRLPCRKRF VKNNSSQRTQ 251 300 BACU001018/1-1054 -------MQR KKREVLARRK YALLPSSSSS SENDLSSESS SSSSTEGEED ENSTTRP00000004958/1-993 KQKERILMQR KKREVLARRK YALLPSSSSS SENDLSSESS SSSSTEG-ED bmy_18948T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000453872/1-995 KQKERILMQR KKREVLARRK YALLPSSSSS SENDLSSESS SSSSTEGEED ENSBTAP00000018858/1-994 KQKERILMQR KKREVLARRK YALLPSSSSS SENDLSSESS SSSSTEGEED 301 350 BACU001018/1-1054 LFVSTSENHQ NNPAVPSGNI DEDVVVIEAS STPQITANEE INVTSTDSEV ENSTTRP00000004958/1-993 LFVSTSENHQ NNPTVPSGNI DEDVVVIEAS STPQITANEE INVTSTDSEV bmy_18948T0/1-582 ---------- ---------- -------KAS STPQITANEE INVTSTDSEV ENSP00000453872/1-995 LFVSASENHQ NNPAVPSGSI DEDVVVIEAS STPQVTANEE INVTSTDSEV ENSBTAP00000018858/1-994 LFVSTSENHQ NNPTVASGNI DEDVVVIEAS STPQITANEE INVTSTDSEV 351 400 BACU001018/1-1054 EIVTVGESYR SRSTLGHNRS HWSQGSSSHT SRPQEPRNRS RISTVIQPLR ENSTTRP00000004958/1-993 EIVTVGESYR SRSTLGHNRS HWSQGSSSHT SRPQEPRNRS RISTVIQPLR bmy_18948T0/1-582 EIVTVGESYR SRSTLGHNRS HWSQGSSSHT SRPQEPRNRS RISTVIQPLR ENSP00000453872/1-995 EIVTVGESYR SRSTLGHSRS HWSQGSSSHA SRPQEPRNRS RISTVIQPLR ENSBTAP00000018858/1-994 EIVTVGESYR SRSTLGHNRS HWSQGSSSHT SRPQEPRNRN RMSTVIQPLR 401 450 BACU001018/1-1054 QNAAEVVDLT VDEDEPTVVP TTSTRMESQT TSASINNSNP STSEQPSDTA ENSTTRP00000004958/1-993 QNAAEVVDLT VDEDEPTVVP TTSTRMESQT TSASINNSNP STSEQPSDTA bmy_18948T0/1-582 QNAAEVVDLT VDEDEPTVVP TTSTRMESQT TSASINNSNP STSEQPSDTA ENSP00000453872/1-995 QNAAEVVDLT VDEDEPTVVP TTSARMESQA TSASINNSNP STSEQASDTA ENSBTAP00000018858/1-994 QNAAEVVDLT VDEDEPTVVP TTSARMESQT TSASINNSNP STSEQASDTA 451 500 BACU001018/1-1054 SAVTSSQPSA VSETSPMLAS NSMTGTSTG- ---------- ---------- ENSTTRP00000004958/1-993 SAVTSSQPSA VSETSPMLAS NSMSGTSTGD DSRRTAPSAI TETGPPAMPR bmy_18948T0/1-582 SAVTSSQPSA VSETSPMLAS NSMTGTSTGD DSRRTASSAI TETGPPAMPR ENSP00000453872/1-995 SAVTSSQPST VSETSATLTS NSTTGTSIGD DSRRTTSSAV TETGPPAMPR ENSBTAP00000018858/1-994 AAVTSSQPST VSETSTTLTS NSMTGTSTGD DSRRTASNAV TEPGPPAMPR 501 550 BACU001018/1-1054 ---------- ---------- ---------- ---------- --------AV ENSTTRP00000004958/1-993 LPSCCPQHSP CGGSSQSHHA LGHPHASCFQ QHGHHFQHHH HHHHTPHPAV bmy_18948T0/1-582 LPSCCPQHSP CGGSSQXHHA LGHPHTSCFQ QHGHHFQHHH HHHHTPHPAV ENSP00000453872/1-995 LPSCCPQHSP CGGSSQNHHA LGHPHTSCFQ QHGHHFQHHH HHHHTPHPAV ENSBTAP00000018858/1-994 LPSCCPQHSP CGGSSQNHHA LGHPHTSCFQ QHGHHFQHHH HHHHTPHPAV 551 600 BACU001018/1-1054 PVSPSFGDPT CPVERPPQVQ APCGANSSSG TSYHDQQALP VDLSSSGIRS ENSTTRP00000004958/1-993 PVSPSFGDPT CPVERPPQVQ APCGANSSSG TSYHDQQALP VDLSSSGIRS bmy_18948T0/1-582 PVSPSFGDPT CPVERPPQVQ APCGANSSSG TSYHDQQALP VDLSSSGIRS ENSP00000453872/1-995 PVSPSFSDPA CPVERPPQVQ APCGANSSSG TSYHEQQALP VDLSNSGIRS ENSBTAP00000018858/1-994 PVSPSFSDPT CPVERPPQVQ PPCGANSTSS TSYHDQQALP VDLSSSGIRS 601 650 BACU001018/1-1054 HGSGGFHGAS AFDPCCPVSS SRAAIFGHQA AAAAAPSQPL -SVDGYGSSV ENSTTRP00000004958/1-993 HGSGGFHGAS AFDPCCPVSS SRAAIFGHQA AAAAAPSQPL -SVDGYGSSV bmy_18948T0/1-582 HGSGGFHGAS AFDPCCPVSS SRAAIFGHQA AAAAAPSQPL -SVDGYGSSV ENSP00000453872/1-995 HGSGSFHGAS AFDPCCPVSS SRAAIFGHQ- AAAAAPSQPL SSIDGYGSSM ENSBTAP00000018858/1-994 HGSAGFHGAS AFDPCCPVSS SRAAIFGHQA AAAAAPSQPL -SIDGYGSSM 651 700 BACU001018/1-1054 VAQPQPQPPP QASLSSCRHY MPPPYASLTR PLHHQTSACP HSHGNPPPQT ENSTTRP00000004958/1-993 VAQPQPQPPP QASLSSCRHY MPPPYASLTR PLHHQTSACP HSHGNPPPQT bmy_18948T0/1-582 VAQPQPQPPP QASLSSCRHY MPPPCK---- ---------- ---------- ENSP00000453872/1-995 VAQPQPQPPP QPSLSSCRHY MPPPYASLTR PLHHQASACP HSHGNPPPQT ENSBTAP00000018858/1-994 VAQPQPQPPP QASLSSCRHY MPPPYASLTR PLHHQTSACP HSHGNPPPQT 701 750 BACU001018/1-1054 QPPPQVDYVI PHPVHAFHSQ ISSHATSHPV APPPPTHLAS TAAPVPQHLP ENSTTRP00000004958/1-993 QPPPQVDYVI PHPVHAFHSQ ISSHATSHPV APPPPTHLAS TAAPVPQHLP bmy_18948T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000453872/1-995 QPPPQVDYVI PHPVHAFHSQ ISSHATSHPV APPPPTHLAS TAAPIPQHLP ENSBTAP00000018858/1-994 QPPPQVDYVI PHPVHAFHSQ ISSHATSHPV APPPPTHLAS TAAPIPQHLP 751 800 BACU001018/1-1054 PTHQPISHHI PATAPTAQRL HPHEVMQRME VQRRRMMQHP T--------- ENSTTRP00000004958/1-993 PTHQPISHHI PATAPTAQRL HPHEVMQRME VQRRRMMQHP T--------- bmy_18948T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000453872/1-995 PTHQPISHHI PATAPPAQRL HPHEVMQRME VQRRRMMQHP TGLFVFCVSR ENSBTAP00000018858/1-994 PTHQPISHHI PATAPPAQRL HPHEMMQRME VQRRRMMQHP T--------- 801 850 BACU001018/1-1054 RAHERPPPHP HRMHPNYGHG HHIHVPQTMS SHPRQAPERS AWSV----SC ENSTTRP00000004958/1-993 RAHERPPPHP HRMHPNYGHG HHIHVPQTMS SHPRQAPERS AWELGIEAGV bmy_18948T0/1-582 RAHERPPPHP HRMHPNYGHG HHIHVPQTMS SHPRQAPERS AWELGIEAGV ENSP00000453872/1-995 RAHERPPPHP HRMHPNYGHG HHIHVPQTMS SHPRQAPERS AWELGIEAGV ENSBTAP00000018858/1-994 RAHERPPPHP HRMHPNYGHG HHIHVPQTMS SHPRQAPERS AWELGIEAGV 851 900 BACU001018/1-1054 LFQSYAQFLL VETWKRYFVV ECLEKGSVEK LNSSLSVKHC LWVPDMAGYP ENSTTRP00000004958/1-993 TAATYTPGAL HPHLAHYHAP PRLHHLQLGA LP-------- LMVPDMAGYP bmy_18948T0/1-582 TAATYTPGAL HPHLAHYHAP PRLHHLQLGA LP-------- LMVPDMAGYP ENSP00000453872/1-995 TAATYTPGAL HPHLAHYHAP PRLHHLQLGA LP-------- LMVPDMAGYP ENSBTAP00000018858/1-994 TAATYTPGAL HPHLAHYHAP PRLHHLQLGA LP-------- LMVPDMAGYP 901 950 BACU001018/1-1054 HIRYISSGLD GTSFRGPFRG NFEELIHLEE RLGNVNRGAS QGTIERCTYP ENSTTRP00000004958/1-993 HIRYISSGLD GTSFRGPFRG NFEELXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18948T0/1-582 HIRYISSGLD GTSFRGPFRG NFEELIHLEE RLGNVNRGAS QGTIERCTYP ENSP00000453872/1-995 HIRYISSGLD GTSFRGPFRG NFEELIHLEE RLGNVNRGAS QGTIERCTYP ENSBTAP00000018858/1-994 HIRYISSGLD GTSFRGPFRG NFEELIHLEE RLGNVNRGAS QGTIERCTYP 951 1000 BACU001018/1-1054 HKYKK----- ---RKLHCKQ DGEEGTEEDT EEKCTICLSI LEEGEDVRFS ENSTTRP00000004958/1-993 XXXXXVTTDW FSQRKLHCKQ DGEEGTEEDT EEKCTICLSI LEEGEDVR-- bmy_18948T0/1-582 HKYKK----- ---------- ---------- ---------- --EGEFER-- ENSP00000453872/1-995 HKYKK----- ---RKLHCKQ DGEEGTEEDT EEKCTICLSI LEEGEDVR-- ENSBTAP00000018858/1-994 HKYKKVTTDW FSQRKLHCKQ DGEEGTEEDT EEKCTICLSI LEEGEDVR-- 1001 1050 BACU001018/1-1054 RRVFDKGIGR DMVSTDLENI DTGVNSKPKS HVTIRRAVLE EIGNRVTIRA ENSTTRP00000004958/1-993 ---------- ---------- ---------- ---------- ---------- bmy_18948T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000453872/1-995 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018858/1-994 ---------- ---------- ---------- ---------- ---------- 1051 1100 BACU001018/1-1054 AQVTKKAQNT KVPVPPTKTT NVNKQLKPTA SVKPVQMEVL APKGPSPTPA ENSTTRP00000004958/1-993 ---------- RLPC------ ---------- ---------- ---------- bmy_18948T0/1-582 ---------- RLPC------ ---------- ---------- ---------- ENSP00000453872/1-995 ---------- RLPC------ ---------- ---------- ---------- ENSBTAP00000018858/1-994 ---------- RLPC------ ---------- ---------- ---------- 1101 1150 BACU001018/1-1054 DISMKEENLC QAFSDALLCK IEDIDTEDWE NPQLCSDYVK DIYQYLRQLE ENSTTRP00000004958/1-993 ---------M HLFHQV---- ---------- ----CVDQ-- ---------- bmy_18948T0/1-582 ---------M HLFHQV---- ---------- ----CVDQ-- ---------- ENSP00000453872/1-995 ---------M HLFHQV---- ---------- ----CVDQ-- ---------- ENSBTAP00000018858/1-994 ---------M HLFHQV---- ---------- ----CVDQ-- ---------- 1151 1200 BACU001018/1-1054 VLQSINPHFL DGRDINGRMR AILVDWLVQV HSKFRLLQET LYMCVAIMDR ENSTTRP00000004958/1-993 ---------- ---------- -----WLITN KK-------- ---C------ bmy_18948T0/1-582 ---------- ---------- -----WLITN KK-------- ---C------ ENSP00000453872/1-995 ---------- ---------- -----WLITN KK-------- ---C------ ENSBTAP00000018858/1-994 ---------- ---------- -----WLITN KK-------- ---C------ 1201 1250 BACU001018/1-1054 FLQVQPVSRK KLQLVGITAL LLASKYEEMF SPNIEDFVYI TDNAYTSSQI ENSTTRP00000004958/1-993 -----PICR- ---------- ---------- ---------- ---------- bmy_18948T0/1-582 -----PICR- ---------- ---------- ---------- ---------- ENSP00000453872/1-995 -----PICR- ---------- ---------- ---------- ---------- ENSBTAP00000018858/1-994 -----PICR- ---------- ---------- ---------- ---------- 1251 1300 BACU001018/1-1054 REMETLILKE LKFELGRPLP LHFLRRASKA GEVDVEQHTL AKYLMELTLI ENSTTRP00000004958/1-993 ---------- ---------- ---------- --VDIE---- ---------- bmy_18948T0/1-582 ---------- ---------- ---------- --VDIE---- ---------- ENSP00000453872/1-995 ---------- ---------- ---------- --VDIE---- ---------- ENSBTAP00000018858/1-994 ---------- ---------- ---------- --VDIE---- ---------- 1301 1350 BACU001018/1-1054 DYDMVHYHPS KVAAAASCLS QKVLGHGKWN LKQQYYTGYT ENEVLEVMQH ENSTTRP00000004958/1-993 ---------- ---------- ---------- ---------- ---------- bmy_18948T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000453872/1-995 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018858/1-994 ---------- ---------- ---------- ---------- ---------- 1351 1400 BACU001018/1-1054 MAKNVVKVNE KLMKFIAIKN KYASSKLLKI STIPQLNSKT IRELASPLLG ENSTTRP00000004958/1-993 ---------- ---------- ---------- ---AQLPSES ---------- bmy_18948T0/1-582 ---------- ---------- ---------- ---AQLPSES ---------- ENSP00000453872/1-995 ---------- ---------- ---------- ---AQLPSES ---------- ENSBTAP00000018858/1-994 ---------- ---------- ---------- ---AQLPSES ---------- 1401 1450 BACU001018/1-1054 RS ENSTTRP00000004958/1-993 -- bmy_18948T0/1-582 -- ENSP00000453872/1-995 -- ENSBTAP00000018858/1-994 --