KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:53 2014 Check: 00 .. Name: ENSTTRP00000001265/1-924 Len: 927 Check: 7954 Weight: 1.00 Name: bmy_12139T0/1-592 Len: 927 Check: 8076 Weight: 1.00 Name: ENSP00000304669/1-906 Len: 927 Check: 5940 Weight: 1.00 Name: ENSBTAP00000018863/1-906 Len: 927 Check: 6533 Weight: 1.00 Name: BACU004114/1-447 Len: 927 Check: 1360 Weight: 1.00 // 1 50 ENSTTRP00000001265/1-924 MTAVHAGNIN FKWDPKSLEI RTLAVERLLE PLVTQVTTLV NTNSKGPSNK bmy_12139T0/1-592 ---------- ---------- -------MRE PLTSFLFSVS ---------- ENSP00000304669/1-906 MTAVHAGNIN FKWDPKSLEI RTLAVERLLE PLVTQVTTLV NTNSKGPSNK ENSBTAP00000018863/1-906 MTAVHTGNIN FKWDPKSLEI RTLAVERLLE PLVTQVTTLV NTNSKGPSNK BACU004114/1-447 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000001265/1-924 KRGRSKKAHV LAASVEQATE NFLEKGDKIA KESQFLKEEL VAAVEDVRKQ bmy_12139T0/1-592 ---------- ---------- ---------- ---------- ---------- ENSP00000304669/1-906 KRGRSKKAHV LAASVEQATE NFLEKGDKIA KESQFLKEEL VAAVEDVRKQ ENSBTAP00000018863/1-906 KRGRSKKAHV LAASVEQATE NFLEKGDKIA KESQFLKEEL VAAVEDVRKQ BACU004114/1-447 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000001265/1-924 GDLMKSAAGE FADDPCSSVK RGNMVRAARA LLSAVTRLLI LADMADVYKL bmy_12139T0/1-592 ---------- ---------- ---------- ---------- ---------- ENSP00000304669/1-906 GDLMKAAAGE FADDPCSSVK RGNMVRAARA LLSAVTRLLI LADMADVYKL ENSBTAP00000018863/1-906 GDLMKSAAGE FADDPCSSVK RGNMVRAARA LLSAVTRLLI LADMADVYKL BACU004114/1-447 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000001265/1-924 LVQLKVVEDG ILKLRNAGNE QDLGIQYKAL KPEVDKLNIM AAKRQQELKD bmy_12139T0/1-592 ---------- ---------- -------QAF RVKLNPPGSF TVIKQCALNS ENSP00000304669/1-906 LVQLKVVEDG ILKLRNAGNE QDLGIQYKAL KPEVDKLNIM AAKRQQELKD ENSBTAP00000018863/1-906 LVQLKLVEDG ILKLRNAGTE QDLGIQYKAL KPEVDKLNIM AAKRQQELKD BACU004114/1-447 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000001265/1-924 MGHRDQMAAA RGILQKNIPI LYTASQACLQ HPDVAAYKAN RDLIYKQLQQ bmy_12139T0/1-592 IGVV------ ---------- ---------- ---------- ---------- ENSP00000304669/1-906 VGHRDQMAAA RGILQKNVPI LYTASQACLQ HPDVAAYKAN RDLIYKQLQQ ENSBTAP00000018863/1-906 VGHRDQMAAA RGILQKNVPI LYTASQACLQ HPDVAAYKAN RDLIYKQLQQ BACU004114/1-447 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000001265/1-924 AVTGISNAAQ ATASDDASQH QG-GGGELAY ALNNFDKQII VDPLSFSEER bmy_12139T0/1-592 ---------- ---------- ---------- ---------- ---------- ENSP00000304669/1-906 AVTGISNAAQ ATASDDASQH QGGGGGELAY ALNNFDKQII VDPLSFSEER ENSBTAP00000018863/1-906 AVTGISNAAQ ATASDDASQH PGAGGGELAY ALNNFDKQII VDPLSFSEER BACU004114/1-447 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000001265/1-924 FRPSLEERLE SIISGAALMA DSSCTRDDRR ERIVAECNAV RQALQDLLSE bmy_12139T0/1-592 ---------- ---------- ---------- ---------- ---------- ENSP00000304669/1-906 FRPSLEERLE SIISGAALMA DSSCTRDDRR ERIVAECNAV RQALQDLLSE ENSBTAP00000018863/1-906 FRPSLEERLE SIISGAALMA DSSCTRDDRR ERIVAECNAV RQALQDLLSE BACU004114/1-447 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000001265/1-924 YMGNAGRKER SDALNSAIDK MTKKTRDLRR QLRKAVMDHV SDSFLETNVP bmy_12139T0/1-592 ----AGRKER SDALNSAIDK MTKKTRDLRR QLRKAVMDHV SDSFLETNVP ENSP00000304669/1-906 YMGNAGRKER SDALNSAIDK MTKKTRDLRR QLRKAVMDHV SDSFLETNVP ENSBTAP00000018863/1-906 YMGNAGRKER SDALNSAIDK MTKKTRDLRR QLRKAVMDHV SDSFLETNVP BACU004114/1-447 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000001265/1-924 LLVLIEAAKN GNEKEVKEYA QVFREHANKL IEVANLACSI SNNEEGVKLV bmy_12139T0/1-592 LLVLIEAAKN GNEKEVKEYA QVFREHANKL IEVANLACSI SNNEEGVKLV ENSP00000304669/1-906 LLVLIEAAKN GNEKEVKEYA QVFREHANKL IEVANLACSI SNNEEGVKLV ENSBTAP00000018863/1-906 LLVLIEAAKN GNEKEVKEYA QVFREHANKL IEVANLACSI SNNEEGVKLV BACU004114/1-447 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000001265/1-924 RMSASQLEAL CPQVINAALA LAAKPXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12139T0/1-592 RMSASQLEAL CPQVINAALA LAAKPQSKLA QENMDLFKEQ WEKQVRVLTD ENSP00000304669/1-906 RMSASQLEAL CPQVINAALA LAAKPQSKLA QENMDLFKEQ WEKQVRVLTD ENSBTAP00000018863/1-906 RMSASQLEAL CPQVINAALA LAAKPQSKLA QENMDLFKEQ WEKQVRVLTD BACU004114/1-447 ---------M SLQVINAALA LAAKPQSKLA QENMDPFKER WEKQVRVLTD 501 550 ENSTTRP00000001265/1-924 AVDD-TSIDD F-AVSENHIL EDVNKCVIAL QEKDVDGLDR TAGAIRGRAA bmy_12139T0/1-592 AVDDITSIDD FLAVSENHIL EDVNKCVIAL QEKDVDGLDR TAGAIRGRAA ENSP00000304669/1-906 AVDDITSIDD FLAVSENHIL EDVNKCVIAL QEKDVDGLDR TAGAIRGRAA ENSBTAP00000018863/1-906 AVDDITSIDD FLAVSENHIL EDVNKCVIAL QEKDVDGLDR TAGAIRGRAA BACU004114/1-447 AVNDITSIDD FLAVSENHIL EDVNKCVIAL QEKDVDGLDR TAGAIRGRAA 551 600 ENSTTRP00000001265/1-924 RVIHVVTSEM DNYEPGVYTE KVLEATKLLS NTVMPRFTEQ VEAAVEALSS bmy_12139T0/1-592 RVIHVVTSEM DNYEPGVYTE KVLEATKLLS NTVMPRFTEQ VEAAVEALSS ENSP00000304669/1-906 RVIHVVTSEM DNYEPGVYTE KVLEATKLLS NTVMPRFTEQ VEAAVEALSS ENSBTAP00000018863/1-906 RVIHVVTSEM DNYEPGVYTE KVLEATKLLS NTVMPRFTEQ VEAAVEALSS BACU004114/1-447 RVIHVVTSEM DNYEPGVYTE KVLEATKLLS NTVMPRFTEQ VEAAVEALSS 601 650 ENSTTRP00000001265/1-924 DPAQPMDENE FIDASRLVYD GIRDIRKAVL MIRTPEELDD SDFETEDFDV bmy_12139T0/1-592 DPAQPMDENE FIDASRLVYD GIRDIRKAVL MIRTPEELDD SDFETEDFDV ENSP00000304669/1-906 DPAQPMDENE FIDASRLVYD GIRDIRKAVL MIRTPEELDD SDFETEDFDV ENSBTAP00000018863/1-906 DPAQPMDENE FIDASRLVYD GIRDIRKAVL MIRTPEELDD SDFETEDFDV BACU004114/1-447 DPAQPMDENE FIDASRLVYD GIRDIRKAVL MIRTPEELDD SDFETEDFDV 651 700 ENSTTRP00000001265/1-924 RSRTSVQTED DQLIAGQSAR AIMAQLPQEQ KAKIAEQVAS FQEEKSKLDA bmy_12139T0/1-592 RSRTSVQTED DQLIAGQSAR AIMAQLPQEQ KAKIAEQVAS FQEEKSKLDA ENSP00000304669/1-906 RSRTSVQTED DQLIAGQSAR AIMAQLPQEQ KAKIAEQVAS FQEEKSKLDA ENSBTAP00000018863/1-906 RSRTSVQTED DQLIAGQSAR AIMAQLPQEQ KAKIAEQVAS FQEEKSKLDA BACU004114/1-447 RSRTSVQTED DQLIAGQSAR AIMAQLPQEQ KAKIAEQVAS FQEEKSKLDA 701 750 ENSTTRP00000001265/1-924 EVSKWDDSGN DIIVLAKQMC MIMMEMTDFT RGKGPLKNTS DVISAAKKIA bmy_12139T0/1-592 EVSKWDDSGN DIIVLAKQMC MIMMEMTDFT RGKGPLKNTS DVISAAKKIA ENSP00000304669/1-906 EVSKWDDSGN DIIVLAKQMC MIMMEMTDFT RGKGPLKNTS DVISAAKKIA ENSBTAP00000018863/1-906 EVSKWDDSGN DIIVLAKQMC MIMMEMTDFT RGKGPLKNTS DVISAAKKIA BACU004114/1-447 EVSKWDDSGN DIIVLAKQMC MIMMEMTDFT RGKGPLKNTS DVISAAKKIA 751 800 ENSTTRP00000001265/1-924 EAGSRMDKLG RTIADHCPDS ACKQDLLAYL QRIALYCHQL NICSKVKAEV bmy_12139T0/1-592 EAGSRMDKLG RTIADHCPDS ACKQDLLAYL QRIALYCHQL NICSKVKAEV ENSP00000304669/1-906 EAGSRMDKLG RTIADHCPDS ACKQDLLAYL QRIALYCHQL NICSKVKAEV ENSBTAP00000018863/1-906 EAGSRMDKLG RTIADHCPDS ACKQDLLAYL QRIALYCHQL NICSKVKAEV BACU004114/1-447 EAGSRMDKLG RTIADHCPDS ACKQDLLAYL QRIALYCHQL NICSKVKAEV 801 850 ENSTTRP00000001265/1-924 QNLGGELVVS GNCSCLAWLE LGGLPLPLCT TPVDSAMSLI QAAKNLMNAV bmy_12139T0/1-592 QNLGGELVVS G--------- ---------- --VDSAMSLI QAAKNLMNAV ENSP00000304669/1-906 QNLGGELVVS G--------- ---------- --VDSAMSLI QAAKNLMNAV ENSBTAP00000018863/1-906 QNLGGELVVS G--------- ---------- --VDSAMSLI QAAKNLMNAV BACU004114/1-447 QNLGGELVVS G--------- ---------- --VDSAMSLI QAAKNLMNAV 851 900 ENSTTRP00000001265/1-924 VQTVKASYVA STKYQKSQGM ASLNLPAVSW KMKAPEKKPL VKREKQDETQ bmy_12139T0/1-592 VQTVKASYVA STKYQKSQGM ASLNLPAVSW KMKAPEKKPL VKREKQDETQ ENSP00000304669/1-906 VQTVKASYVA STKYQKSQGM ASLNLPAVSW KMKAPEKKPL VKREKQDETQ ENSBTAP00000018863/1-906 VQTVKASYVA STKYQKSQGM ASLNLPAVSW KMKAPEKKPL VKREKQDETQ BACU004114/1-447 VQTVKASYVA STKYQKSQGM ASLNLPAVSW KMKAPEKKPL VKREKQDETQ 901 950 ENSTTRP00000001265/1-924 TKIKRASQKK HVNPVQALSE FKAMDSI bmy_12139T0/1-592 TKIKRASQKK HVNPVQALSE FKAMDSI ENSP00000304669/1-906 TKIKRASQKK HVNPVQALSE FKAMDSI ENSBTAP00000018863/1-906 TKIKRASQKK HVNPVQALSE FKAMDSI BACU004114/1-447 TKIKRASQKK HVNPVQALSE FKAMDSI