KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:57 2014 Check: 00 .. Name: ENSTTRP00000009288/1-1100 Len: 1210 Check: 9814 Weight: 1.00 Name: ENSP00000270328/1-1103 Len: 1210 Check: 8765 Weight: 1.00 Name: bmy_11759T0/1-1195 Len: 1210 Check: 9578 Weight: 1.00 Name: BACU002524/1-1029 Len: 1210 Check: 9149 Weight: 1.00 Name: ENSBTAP00000018887/1-1103 Len: 1210 Check: 4117 Weight: 1.00 // 1 50 ENSTTRP00000009288/1-1100 MAPACQILRW ALALGLGLTF EVTHAFRSQD EFLSSLESYE IAFPTRVDHN ENSP00000270328/1-1103 MAPACQILRW ALALGLGLMF EVTHAFRSQD EFLSSLESYE IAFPTRVDHN bmy_11759T0/1-1195 MAPACQILRW ALALGLGLTF EVTHAFRSQD EFLSSLESYE IAFPTRVDHN BACU002524/1-1029 MAPACQILRW ALALGLGLTF EVTHAFRSQ- ---------- ---------- ENSBTAP00000018887/1-1103 MAPACQILHW ALALGLGLAF EVTHAFRSQD EFLSSLDSYE IAFPTRVDHN 51 100 ENSTTRP00000009288/1-1100 GALLAFSPPT PRRQRRGTGP QAESRLFYKV AAPSTHFLLN LTRSPRLLAG ENSP00000270328/1-1103 GALLAFSPPP PRRQRRGTGA TAESRLFYKV ASPSTHFLLN LTRSSRLLAG bmy_11759T0/1-1195 GALLAFSPPT PRRQRRGTGP QAESRLFYKV AAPSTHFLLN LTRSPRLLAG BACU002524/1-1029 ---------- ---------- ---------- ---------- ---------G ENSBTAP00000018887/1-1103 GALLAFSPPA PRRQRRGTGP QAESRLFYKV AAPSTHFLLN LTHSPRLLAG 101 150 ENSTTRP00000009288/1-1100 HVSVEYWTRE GLAWQRAARP HCLYAGHLQG QASSSHVAIS TCGGLHGLIV ENSP00000270328/1-1103 HVSVEYWTRE GLAWQRAARP HCLYAGHLQG QASTSHVAIS TCGGLHGLIV bmy_11759T0/1-1195 HVSVEYWTRE GLAWQRAARP HCLYAGHLQG QAGSSH---- -----HGLIV BACU002524/1-1029 HVSVEYWTRE GLAWQRAARP HCLYAGHLQG QAGSSHVAIS TCGGLHGLIV ENSBTAP00000018887/1-1103 HVSVEYWTRE GLAWQRAARP HCLYAGHLQG QASSSHVAIS TCGGLHGLIV 151 200 ENSTTRP00000009288/1-1100 ADEEEYLIEP LQGGPKGQRG PEESGPHVVY KRSSLRHPHL DTACGVRXXX ENSP00000270328/1-1103 ADEEEYLIEP LHGGPKGSRS PEESGPHVVY KRSSLRHPHL DTACGVRDEK bmy_11759T0/1-1195 ADEEEYLIEP LQGGPKGHRG PEESGPHVVY KRSSLRHPHL DTACGVRDEK BACU002524/1-1029 ADEEEYLIEP LQGGPKGHRG PEESGPHVVY KRSSLRHPHL DTACGVRDEK ENSBTAP00000018887/1-1103 ADEEEYLIEP LQGGPKGHRG PEESGPHVVY KRSSLRHPHL DTACGVRDEK 201 250 ENSTTRP00000009288/1-1100 XXXXXXXXXX XXXXXXXXXX GNETER-QPG LKRSVSRERY VT--LVADKM ENSP00000270328/1-1103 PWKGRPWWLR TLKPPPARPL GNETERGQPG LKRSVSRERY VETLVVADKM bmy_11759T0/1-1195 PWKGRPWWLR TLKPPPAWPL GNETERGQPG LKRSVSRERY VETLVVADKM BACU002524/1-1029 PWKGRPWWLR TLKPPPAWPL GNETERGQPG LKRSVSRERY VETLVVADKM ENSBTAP00000018887/1-1103 PWKGRPWWLR TLKPPPARPL GNETERGQPG LKRSVSRERY VETLVVADKM 251 300 ENSTTRP00000009288/1-1100 MVAYHGRRDV EQYVLAIMNI VAKLFQDSSL GNIVNILVTR LILLTEDQPT ENSP00000270328/1-1103 MVAYHGRRDV EQYVLAIMNI VAKLFQDSSL GSTVNILVTR LILLTEDQPT bmy_11759T0/1-1195 MVAYHGRRDV EQYVLAIMNI ------DSSL GNIVNILVTR LILLTEDQPT BACU002524/1-1029 MVAYHGRRDV EQYVLAIMNI VAKLFQDSSL GNIVNILVTR LILLTEDQPT ENSBTAP00000018887/1-1103 MVAYHGRRDV EQYVLAIMNI VAKLFQDSSL GNIVNILVTR LILLTEDQPT 301 350 ENSTTRP00000009288/1-1100 LEITHHAGKS LDSFCKWQKS IVNRSGHGNA IPENGVANHD TAVLITRYDI ENSP00000270328/1-1103 LEITHHAGKS LDSFCKWQKS IVNHSGHGNA IPENGVANHD TAVLITRYDI bmy_11759T0/1-1195 LEITHHAGKS LDSFCKWQKS IVNRSGHGNA IPENGVANHD TAVLITRYDI BACU002524/1-1029 LEITHHAGKS LDSFCKWQKS IVNRSGHGNA IPENGVANHD TAVLITRYDI ENSBTAP00000018887/1-1103 LEITHHAGKS LDSFCKWQKS IVNRSGHGNA IPENGVANHD TAVLITRYDI 351 400 ENSTTRP00000009288/1-1100 CIYKNKPCGT LGLAPVGGMC ERERSCSINE DIGLATAFTI AHEIGHTFGM ENSP00000270328/1-1103 CIYKNKPCGT LGLAPVGGMC ERERSCSVNE DIGLATAFTI AHEIGHTFGM bmy_11759T0/1-1195 CIYKNKPCGT LGLAPVGGMC ERERSCSINE DIGLATAFTI AHEIGHTFGM BACU002524/1-1029 CIYKNKPCGT LGLAPVGGMC ERERSCSINE DIGLATAFTI AHEIGHTFGM ENSBTAP00000018887/1-1103 CIYKNKPCGT LGLAPVGGMC ERERSCSINE DIGLATAFTI AHEIGHTFGM 401 450 ENSTTRP00000009288/1-1100 NHDGVGNSCG ARGQDPAKLM AAHITMKTNP FVWSSCSRDY ITSFLDLGLG ENSP00000270328/1-1103 NHDGVGNSCG ARGQDPAKLM AAHITMKTNP FVWSSCSRDY ITSFLDSGLG bmy_11759T0/1-1195 NHDGVGNSCG ARGQDPAKLM AAHITMKTNP FVWSSCSRDY ITSFLDLGLG BACU002524/1-1029 NHDGVGNSCG ARGQDPAKLM AAHITMKTNP FVWSSCSRDY ITSFLDLGLG ENSBTAP00000018887/1-1103 NHDGVGNSCG ARGQDPAKLM AAHITMKTNP FVWSSCSRDY ITSFLDSGLG 451 500 ENSTTRP00000009288/1-1100 LCLNNRPPRQ DFVYPTVAPG QAYDADEQCR FQHGVKSRQC KY-------- ENSP00000270328/1-1103 LCLNNRPPRQ DFVYPTVAPG QAYDADEQCR FQHGVKSRQC KY-------- bmy_11759T0/1-1195 LCLNNRPPRQ DFVYPTVAPG QAYDADEQCR FQHGVKSRQC KYGVERAFLL BACU002524/1-1029 LCLNNRPPRQ DFVYPTVAPG QAYDADEQCR FQHGVKSRQC KY-------- ENSBTAP00000018887/1-1103 LCLNNRPPRQ DFVYPTVAPG QAYDADEQCR FQHGVKSRQC KY-------- 501 550 ENSTTRP00000009288/1-1100 ---------- ---------- ---------- ---------- --------GE ENSP00000270328/1-1103 ---------- ---------- ---------- ---------- --------GE bmy_11759T0/1-1195 SFLGGEGAAT TRVGGPQGVG NSMWAPHTQA VGVGELGREE HLPGPPGKGE BACU002524/1-1029 ---------- ---------- ---------- ---------- --------GE ENSBTAP00000018887/1-1103 ---------- ---------- ---------- ---------- --------GE 551 600 ENSTTRP00000009288/1-1100 VCSELWCLSK SNRCITNSIP AAEGTLCQTH TIDKGWCYKR VCVPFGSRPE ENSP00000270328/1-1103 VCSELWCLSK SNRCITNSIP AAEGTLCQTH TIDKGWCYKR VCVPFGSRPE bmy_11759T0/1-1195 VCSELWCLSK SNRCITNSIP AAEGTLCQTH TIDKGWCYKR VCVPFGSRPE BACU002524/1-1029 VCSELWCLSK SNRCITNSIP AAEGTLCQTH TIDKGWCYKR VCVPFGSRPE ENSBTAP00000018887/1-1103 VCSELWCLSK SNRCITNSIP AAEGTLCQTH TIDKGWCYKR VCVPFGSRPE 601 650 ENSTTRP00000009288/1-1100 GVDGAWGPWT PWGDCSRTCG GGVSSSSRHC DSPRPTIGGK YCLGERRRHR ENSP00000270328/1-1103 GVDGAWGPWT PWGDCSRTCG GGVSSSSRHC DSPRPTIGGK YCLGERRRHR bmy_11759T0/1-1195 GVDGAWGPWT PWGDCSRTCG GGVSSSSRHC DSPRPTIGGK YCLGERRRHR BACU002524/1-1029 GVDGAWGPWT PWGDCSRTCG GGVSSSSRHC DSPRPTIGGK YCLGERRRHR ENSBTAP00000018887/1-1103 GVDGAWGPWT PWGDCSRTCG GGVSSSSRHC DSPRPTIGGK YCLGERRRHR 651 700 ENSTTRP00000009288/1-1100 SCNTDDCPPG SQDFREMQCS EFDSVPFRGK FYTWKTYRGG GVKACSLTCL ENSP00000270328/1-1103 SCNTDDCPPG SQDFREVQCS EFDSIPFRGK FYKWKTYRGG GVKACSLTCL bmy_11759T0/1-1195 SCNTDDCPPG SQDFREMQCS EFDSVPFRGK FYTWKTYRGG GVKACSLTCL BACU002524/1-1029 SCNTDDCPPG SQDFREMQCS EFDSVPFRGK FYTWKTYRGG GVKACSLTCL ENSBTAP00000018887/1-1103 SCNTEDCPPG SQDFREMQCS EFDSVPFRGK FYTWKTYRGG GVKACSLTCL 701 750 ENSTTRP00000009288/1-1100 AEGFNFYTER AAAVVDGTPC RPDTVDICVS GECKHVGCDR VLGSDLREDK ENSP00000270328/1-1103 AEGFNFYTER AAAVVDGTPC RPDTVDICVS GECKHVGCDR VLGSDLREDK bmy_11759T0/1-1195 AEGFNFYTER AAAVVDGTPC RPDTVDICVS GECKHVGCDR VLGSDLREDK BACU002524/1-1029 AEGFNFYTER AAAVVDGTPC RPDTVDICVS GECKHVGCDR VLGSDLREDK ENSBTAP00000018887/1-1103 AEGFNFYTER AAAVVDGTPC RPDTVDICVS GECKHVGCDR VLGSDLREDK 751 800 ENSTTRP00000009288/1-1100 CRVCGGDGSA CETIEGVFSP AWPGAGYEEV VWIPKGSVHI FIQDLNLSLS ENSP00000270328/1-1103 CRVCGGDGSA CETIEGVFSP ASPGAGYEDV VWIPKGSVHI FIQDLNLSLS bmy_11759T0/1-1195 CRVCGGDGSA CETIEGVFSP AWPGAGYEEV VWIPKGSVHI FIQDLNLSLS BACU002524/1-1029 CRVCGGDGSA CETIEGVFSP AWPGAGYEEV VWIPKGSVHI FIQDLNLSLS ENSBTAP00000018887/1-1103 CRVCGGDGSA CETIEGVFSP ALLGTGYEEV VWIPKGSVHI FIQDLNLSLS 801 850 ENSTTRP00000009288/1-1100 HLALKGDQES LLLEGLPGTP QPHRLPLAGT TFQLRQGPDQ TQSLEALGPI ENSP00000270328/1-1103 HLALKGDQES LLLEGLPGTP QPHRLPLAGT TFQLRQGPDQ VQSLEALGPI bmy_11759T0/1-1195 HLALKGDQES LLLEGLPGTP QPHRLPLAGT TFQLRQGPDQ TQSLEALGPI BACU002524/1-1029 HLALKGDQES LLLEGLPGTP QPHRLPLAGT TFQLRQGPDQ TQSLEALGPI ENSBTAP00000018887/1-1103 HLALKGDQES LLLEGLPGTP QPHRLPLAGT TFQLRQGPDQ TQSLEALGPI 851 900 ENSTTRP00000009288/1-1100 NASLIIMVLA RTELPVLRYR FNAPITRDAL PPYSWHYAPW TKCSAQCAGX ENSP00000270328/1-1103 NASLIVMVLA RTELPALRYR FNAPIARDSL PPYSWHYAPW TKCSAQCAGG bmy_11759T0/1-1195 NASLIVMVLA RTELPVLRYR FNAPITRDAL PPYSWHYAPW TKCSAQCAGG BACU002524/1-1029 NASLIVMVLA RTELPVLRYR FNAPITRDAL PPYSWHYAPW TKCSAQCAGG ENSBTAP00000018887/1-1103 NASLIVMVLT QTELPALRYR FNAPIARDAL PPYSWHYAPW TKCSAQCAGG 901 950 ENSTTRP00000009288/1-1100 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000270328/1-1103 SQVQAVECRN QLDSSAVAPH YCSAHSKLPK RQRACNTEPC PPDWVVGNWS bmy_11759T0/1-1195 SQVQAVECRN QLDSSAVAPH HCSAHSKLPK RQRACNTEPC PPDWVVGNWS BACU002524/1-1029 SQVQAVECRN QLDSSAVAPH HCSAHSKLPK RQRACNTEPC PPDWVVGNWS ENSBTAP00000018887/1-1103 SQVQAVECRN QLDSSAVAPH HCSAHSKLPK RQRACNTEPC PPDWVVGNWS 951 1000 ENSTTRP00000009288/1-1100 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000270328/1-1103 LCSRSCDAGV RSRSVVCQRR VSAAEEKALD DSACPQPRPP VLEACHGPTC bmy_11759T0/1-1195 RCSRSCDAGV RSRSVVCQRR VSAAEEKALD DSACPQPRPP VLEACHGPAC BACU002524/1-1029 RCSRSCDAGV RSRSVVCQRR VSAAEEKALD DSACPQPRPP VLEACHGPAC ENSBTAP00000018887/1-1103 RCSRSCDAGV RSRSVVCQRR VSAAEEKALD DSACLQPRPP VLEACHGPAC 1001 1050 ENSTTRP00000009288/1-1100 XXXXXXXXXX XCTPSCGPGL RHRVVLCKSA DHRATLPSTH CPPAAKPPAT ENSP00000270328/1-1103 PPEWAALDWS ECTPSCGPGL RHRVVLCKSA DHRATLPPAH CSPAAKPPAT bmy_11759T0/1-1195 PPEWAALDWS ECTPSCGPGL RHRVVLCKSA DHRATLPPAH CPPAAKPPAT BACU002524/1-1029 PPEWAALDWS ECTPSCGPGL RHRVVLCKSA DHRATLPPAH CPPAAKPPAT ENSBTAP00000018887/1-1103 PPEWAALDWS ECTPSCGPGL RHRVVLCKSA DHRATLPPAH CQPAAKPPAT 1051 1100 ENSTTRP00000009288/1-1100 MRCNLRRCPP ARWVAGEWGE ---------- ---------- ---------- ENSP00000270328/1-1103 MRCNLRRCPP ARWVAGEWGE ---------- ---------- ---------- bmy_11759T0/1-1195 MRCNLRRCPP ARWVAGEWGE VGGRALQGGN QGRGXRVGGR AGLRLIRDSP BACU002524/1-1029 MRCNLRRCPP ARWVAGEWGE ---------- ---------- ---------- ENSBTAP00000018887/1-1103 MRCNLRRCPP ARWVAGEWGE ---------- ---------- ---------- 1101 1150 ENSTTRP00000009288/1-1100 -CSAQCGFGQ QQRPVRCSSH TGQPSRECAD ALRPPATQQC EAKCDSAPPG ENSP00000270328/1-1103 -CSAQCGVGQ RQRSVRCTSH TGQASHECTE ALRPPTTQQC EAKCDSPTPG bmy_11759T0/1-1195 QCSAQCGFGQ QQRPVRCSSH TGQPSRECAE ALRPPATQQC EAKCDSAPPG BACU002524/1-1029 -----CGFGQ QQRPVRCSSH TGQPSRECAE ALRPPATQQC EAKCDSAPPG ENSBTAP00000018887/1-1103 -CSAQCGFGQ QQRPVRCSSH TGQPSSECAE ALRPPATQQC EAKCDSAPPG 1151 1200 ENSTTRP00000009288/1-1100 DGLEECKDVN KVAYCP---- ---LVLKFQF -------CSR AYFRQMCCKT ENSP00000270328/1-1103 DGPEECKDVN KVAYCP---- ---LVLKFQF -------CSR AYFRQMCCKT bmy_11759T0/1-1195 DGLEAEPTSA RCAAKPAKAA RGRTVLGAKA GGRLGMGVGR PGLQLASLKE BACU002524/1-1029 DGLEECKDVN KVAYCP---- ---LVLKFQF -------CSR AYFRQMCCKT ENSBTAP00000018887/1-1103 DGLEECKDVN KVAYCP---- ---LVLKFQF -------CSR AYFRQMCCKT 1201 1250 ENSTTRP00000009288/1-1100 CQGR------ ENSP00000270328/1-1103 CHGH------ bmy_11759T0/1-1195 PEGAGAGSEG BACU002524/1-1029 CQGR------ ENSBTAP00000018887/1-1103 CQGR------