KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:05:57 2014 Check: 00 ..
Name: ENSP00000282728/1-270 Len: 272 Check: 3785 Weight: 1.00
Name: ENSBTAP00000018899/1-271 Len: 272 Check: 8235 Weight: 1.00
Name: BACU012469/1-95 Len: 272 Check: 3396 Weight: 1.00
Name: ENSTTRP00000011727/1-226 Len: 272 Check: 8210 Weight: 1.00
Name: bmy_11526T0/1-268 Len: 272 Check: 7374 Weight: 1.00
//
1 50
ENSP00000282728/1-270 MQYPHPGP-- AAGAVGVPLY APTPLLQPAH PTPFYIEDIL GRGPAAPTPA
ENSBTAP00000018899/1-271 MQYPHPGPAT AAGAVGVPLY APTPLLQPAH PTPFYIEDIL GRGPAAPTPT
BACU012469/1-95 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000011727/1-226 ---------- ---------- ---------- ---------- --GPAAPTPT
bmy_11526T0/1-268 MQYPHPGPA- AAGALGVPLY APTPLLQPAH PTPFYIEDIL GRGPAAPTPT
51 100
ENSP00000282728/1-270 PTLPSPNSSF TSLVSPYRTP VYEPTPIHPA FSHHSAAALA AAYGPGGFGG
ENSBTAP00000018899/1-271 PTLPSPNSSF TSLVSSYRAP VYEPTPIHPA FSHHSAAALA AAYGPGGFGG
BACU012469/1-95 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000011727/1-226 PT-PSPNSSF TSLVSSYRTP VYEPTPIHPA FSHHSAAALA AAYGPGGFGG
bmy_11526T0/1-268 PTLPSPNSSF TSLVSSYRTP VYEPTPIHPA FSHHSAAALA AAYGPGGFGG
101 150
ENSP00000282728/1-270 PLYPFPRTVN DYTHALLRHD PLGKPLLWSP FLQRPLHKRK GGQVRFSNDQ
ENSBTAP00000018899/1-271 PLYPFPRSVN DYTHALLRHD PLGKPLLWSP FLQRPLHKRK GGQVRFSNDQ
BACU012469/1-95 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000011727/1-226 PLYPFPRSVN DYTHALLRHD PLGKPLLWSP FLQRPLHKRK GGQVRFSNDQ
bmy_11526T0/1-268 PLYPFPRSVN DYTHALLRHD PLGKPLLWSP FLQRPLHKRK GGQVRFSNDQ
151 200
ENSP00000282728/1-270 TIELEKKFET QKYLSPPERK RLAKMLQLSE RQVKTWFQNR RAKWRRLKQE
ENSBTAP00000018899/1-271 TIELEKKFET QKYLSPPERK RLAKMLQLSE RQVKTWFQNR RAKWRRLKQE
BACU012469/1-95 ---------- ---------- ----MLQLSE RQVKTWFQNR RAKWRRLKQE
ENSTTRP00000011727/1-226 TIELEKKFET QKYLSPPERK RLAKMLQLSE RQVKTWFQNR RAKWRRLKQE
bmy_11526T0/1-268 TIELEKKFET QKYLSPPERK RLAKMLQLSE RQVKTWFQNR RAKWRRLKQE
201 250
ENSP00000282728/1-270 NPQSNKKEEL ESLDSSCDQR QDLPSEQNKG ASLDSSQCSP SPASQEDLES
ENSBTAP00000018899/1-271 NPQNNKKEEL ESLDNSCDQR QDLPSDQNTG A-LESSQCSP SPVSQEDLES
BACU012469/1-95 NPQSNKKEEL ESLDNSCDQR QD--SEQNKG A-LDSSQCSP SPVSQEDLES
ENSTTRP00000011727/1-226 NPQNNKKEEL ESLDNSCDQR QD--SEQNKG A-LDSSQCSP SPVSQEDLES
bmy_11526T0/1-268 NPQSNKKEEL ESLDNSCDQR QD--SEQNKG A-LDSSQCSP SPVSQEDLES
251 300
ENSP00000282728/1-270 EISEDSDQEV DIEGDKSYFN AG
ENSBTAP00000018899/1-271 EISEDSDQEV DIEGDKGYFN AG
BACU012469/1-95 EISEDSDQEV DIEGDKGYFN AG
ENSTTRP00000011727/1-226 EISEDSDQEV DIEGDKGYFN AG
bmy_11526T0/1-268 EISEDSDQEV DIEGDKGYFN AG