KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:57 2014 Check: 00 .. Name: ENSP00000282728/1-270 Len: 272 Check: 3785 Weight: 1.00 Name: ENSBTAP00000018899/1-271 Len: 272 Check: 8235 Weight: 1.00 Name: BACU012469/1-95 Len: 272 Check: 3396 Weight: 1.00 Name: ENSTTRP00000011727/1-226 Len: 272 Check: 8210 Weight: 1.00 Name: bmy_11526T0/1-268 Len: 272 Check: 7374 Weight: 1.00 // 1 50 ENSP00000282728/1-270 MQYPHPGP-- AAGAVGVPLY APTPLLQPAH PTPFYIEDIL GRGPAAPTPA ENSBTAP00000018899/1-271 MQYPHPGPAT AAGAVGVPLY APTPLLQPAH PTPFYIEDIL GRGPAAPTPT BACU012469/1-95 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011727/1-226 ---------- ---------- ---------- ---------- --GPAAPTPT bmy_11526T0/1-268 MQYPHPGPA- AAGALGVPLY APTPLLQPAH PTPFYIEDIL GRGPAAPTPT 51 100 ENSP00000282728/1-270 PTLPSPNSSF TSLVSPYRTP VYEPTPIHPA FSHHSAAALA AAYGPGGFGG ENSBTAP00000018899/1-271 PTLPSPNSSF TSLVSSYRAP VYEPTPIHPA FSHHSAAALA AAYGPGGFGG BACU012469/1-95 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011727/1-226 PT-PSPNSSF TSLVSSYRTP VYEPTPIHPA FSHHSAAALA AAYGPGGFGG bmy_11526T0/1-268 PTLPSPNSSF TSLVSSYRTP VYEPTPIHPA FSHHSAAALA AAYGPGGFGG 101 150 ENSP00000282728/1-270 PLYPFPRTVN DYTHALLRHD PLGKPLLWSP FLQRPLHKRK GGQVRFSNDQ ENSBTAP00000018899/1-271 PLYPFPRSVN DYTHALLRHD PLGKPLLWSP FLQRPLHKRK GGQVRFSNDQ BACU012469/1-95 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011727/1-226 PLYPFPRSVN DYTHALLRHD PLGKPLLWSP FLQRPLHKRK GGQVRFSNDQ bmy_11526T0/1-268 PLYPFPRSVN DYTHALLRHD PLGKPLLWSP FLQRPLHKRK GGQVRFSNDQ 151 200 ENSP00000282728/1-270 TIELEKKFET QKYLSPPERK RLAKMLQLSE RQVKTWFQNR RAKWRRLKQE ENSBTAP00000018899/1-271 TIELEKKFET QKYLSPPERK RLAKMLQLSE RQVKTWFQNR RAKWRRLKQE BACU012469/1-95 ---------- ---------- ----MLQLSE RQVKTWFQNR RAKWRRLKQE ENSTTRP00000011727/1-226 TIELEKKFET QKYLSPPERK RLAKMLQLSE RQVKTWFQNR RAKWRRLKQE bmy_11526T0/1-268 TIELEKKFET QKYLSPPERK RLAKMLQLSE RQVKTWFQNR RAKWRRLKQE 201 250 ENSP00000282728/1-270 NPQSNKKEEL ESLDSSCDQR QDLPSEQNKG ASLDSSQCSP SPASQEDLES ENSBTAP00000018899/1-271 NPQNNKKEEL ESLDNSCDQR QDLPSDQNTG A-LESSQCSP SPVSQEDLES BACU012469/1-95 NPQSNKKEEL ESLDNSCDQR QD--SEQNKG A-LDSSQCSP SPVSQEDLES ENSTTRP00000011727/1-226 NPQNNKKEEL ESLDNSCDQR QD--SEQNKG A-LDSSQCSP SPVSQEDLES bmy_11526T0/1-268 NPQSNKKEEL ESLDNSCDQR QD--SEQNKG A-LDSSQCSP SPVSQEDLES 251 300 ENSP00000282728/1-270 EISEDSDQEV DIEGDKSYFN AG ENSBTAP00000018899/1-271 EISEDSDQEV DIEGDKGYFN AG BACU012469/1-95 EISEDSDQEV DIEGDKGYFN AG ENSTTRP00000011727/1-226 EISEDSDQEV DIEGDKGYFN AG bmy_11526T0/1-268 EISEDSDQEV DIEGDKGYFN AG