KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:05:57 2014 Check: 00 .. Name: BACU009894/1-301 Len: 317 Check: 6380 Weight: 1.00 Name: ENSP00000363081/1-266 Len: 317 Check: 4870 Weight: 1.00 Name: ENSBTAP00000018901/1-265 Len: 317 Check: 9671 Weight: 1.00 Name: bmy_12475T0/1-268 Len: 317 Check: 9523 Weight: 1.00 // 1 50 BACU009894/1-301 MTALGTAGAA RVLVTLVAAA LCGHPLFGVS ATLNSVLLNS NAIKNLPPPL ENSP00000363081/1-266 MMALGAAGAT RVFVAMVAAA LGGHPLLGVS ATLNSV-LNS NAIKNLPPPL ENSBTAP00000018901/1-265 MTALGTAGAA RVLVALVAAA LCGHPLLGVS ATLNFV-LNS NAIKNLPRPL bmy_12475T0/1-268 MTALGTAGAA RVLVTLVAAA LCGHPLFGVS ATLNSVLLNS NAIKNLPPPL 51 100 BACU009894/1-301 GGAAGHPGFA VSAAPGILLE GGNKYQTIDN YQPYPCAEDE ECSTDEYCAS ENSP00000363081/1-266 GGAAGHPGSA VSAAPGILYP GGNKYQTIDN YQPYPCAEDE ECGTDEYCAS ENSBTAP00000018901/1-265 GGAAGHPGSA VSAAPGIPFE GGSKYQTIDN HQPYPCAEDE ECSTDEYCAS bmy_12475T0/1-268 GAAAGHPGFA VSAAPGILFE GGNKYQTIDN YQPYPCAEDE ECSTDEYCAS 101 150 BACU009894/1-301 STRGAGAGAQ ICLSCRKRRK RCMRHAMCCP GNYCKNGESG SFLSDSNH-- ENSP00000363081/1-266 PTRGGDAGVQ ICLACRKRRK RCMRHAMCCP GNYCKNGI-- CVSSDQNHF- ENSBTAP00000018901/1-265 PTRG--AGAQ ICLACRKLRK RCMRHAMCCP GNHCKNGI-- CMPSDQNHFH bmy_12475T0/1-268 STRGAGAGAQ ICLSCRKRRK RCMRHAMCCP GNYCKNGI-- CMPSDHNHFN 151 200 BACU009894/1-301 ----PALVRL QLGDNALSFE ---------- NAVPPPANGS SVCEVPLKCF ENSP00000363081/1-266 RGEIEETITE SFGNDHSTLD GYSRRTTLSS KMYHTKGQEG SVCLRSSDCA ENSBTAP00000018901/1-265 RGEIEETIIE SFGNEHSTLD GYSRRTTLSS RMYHTKGQEG SACLRSSDCA bmy_12475T0/1-268 RGEIEETIIE SFGNDHSTLD GYSRRTTLSS KMYHTKGQEG SVCLRSSDCA 201 250 BACU009894/1-301 QEYVCLLITV ISIEEKLRKP LLKALVMITA PWMGTPDELH CLQKCIIPKD ENSP00000363081/1-266 SGLCC----A RHFWSKICKP VLKEGQVCTK HRRKGSHGLE IFQRCYCGEG ENSBTAP00000018901/1-265 AGLCC----A RHFWSKICKP VLKEGQVCTK HRRKGSHGLE IFQRCYCGEG bmy_12475T0/1-268 TGLCC----A RHFWSKICKP VLKEGQVCTK HRRKGSHGLE IFQRCYCGEG 251 300 BACU009894/1-301 KKVLSVSDHQ TVLQGCVVLD ISGPRSVNLF SKKVKCAPST GEKALTGWRY ENSP00000363081/1-266 LSCRIQKDHH QASNS----- ---------- ---------- ---------- ENSBTAP00000018901/1-265 LSCQIQKDHH QASNS----- ---------- ---------- ---------- bmy_12475T0/1-268 LSCRIQKDHH QASNS----- ---------- ---------- ---------- 301 350 BACU009894/1-301 SSVVTVEKNL ERKELLE ENSP00000363081/1-266 SRLHTCQRH- ------- ENSBTAP00000018901/1-265 SRLHTCQRH- ------- bmy_12475T0/1-268 SRLHTCQRH- -------