KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:58 2014 Check: 00 .. Name: bmy_11335T0/1-667 Len: 884 Check: 4345 Weight: 1.00 Name: ENSTTRP00000015527/1-565 Len: 884 Check: 364 Weight: 1.00 Name: ENSP00000362151/1-680 Len: 884 Check: 8359 Weight: 1.00 Name: ENSBTAP00000018905/1-825 Len: 884 Check: 2327 Weight: 1.00 Name: BACU020437/1-560 Len: 884 Check: 443 Weight: 1.00 // 1 50 bmy_11335T0/1-667 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015527/1-565 MMVESASETI RSAPSGQNGV GSLSGQADGG GG-----GAA VAAGGSAGRD ENSP00000362151/1-680 MMVESASETI RSAPSGQNGV GSLSGQADGS SG-----GAT GTTASGTGRE ENSBTAP00000018905/1-825 MMVESASETI RSAPSGQNGV GSLSGQADGG GGGSSGGGAA GPAAGGAGRD BACU020437/1-560 MMVESASETI RSAPSGQNGV GSLSGQADGG GG-------- --SGGXAGRD 51 100 bmy_11335T0/1-667 ---------- MSPAELLHFQ QQQAXQVARQ FLLQQASGLS SPGNNDSKQS ENSTTRP00000015527/1-565 AAAGPDSNGE MSPAELLHFQ QQQALQVARQ FLLQQASGLS SPGNNDSKQS ENSP00000362151/1-680 VTTGADSNGE MSPAELLHFQ QQQALQVARQ FLLQQASGLS SPGNNDSKQS ENSBTAP00000018905/1-825 SAVGADSNGE MSPAELLHFQ QQQALQVARQ FLLQQASGLS SPGNNDSKQS BACU020437/1-560 AAAGADSNGE MSPAELLHFQ QQQALQVARQ FLLQQASGLS SPGNNDSKQS 101 150 bmy_11335T0/1-667 ASAVQVPVSV AMMSPQMLTP QQMQQILSPP QLQALLQQQQ ALMLQQLQEY ENSTTRP00000015527/1-565 ASAVQVPVSV AMMSPQMLTP QQMQQILSPP QLQALLQQQQ ALMLQQXXXX ENSP00000362151/1-680 ASAVQVPVSV AMMSPQMLTP QQMQQILSPP QLQALLQQQQ ALMLQQLQEY ENSBTAP00000018905/1-825 ASAVQVPVSV AMMSPQMLTP QQMQQILSPP QLQALLQQQQ ALMIQQLQEY BACU020437/1-560 ASAVQVPVSV AMMSPQMLTP QQMQQILSPP QLQALLQQQQ ALMLQQLQEY 151 200 bmy_11335T0/1-667 YKKQQEQLHL QLLTQQQAGK QQPKEVRGSG RAGCAPQRTP APHLQCQP-- ENSTTRP00000015527/1-565 XXKQQEQLHL QLLTQQQVGK QQPKEALGNK QLAFQQQLLQ MQQLQQQHLL ENSP00000362151/1-680 YKKQQEQLHL QLLTQQQAGK PQPKEALGNK QLAFQQQLLQ MQQLQQQHLL ENSBTAP00000018905/1-825 YKKQQEQLHL QLLTQQQAGK QQPKEALGNK QLAFQQQLLQ MQQLQQQHLL BACU020437/1-560 YKKQQEQLHL QLLTQQQAGK QQPKEALGNK QLAFQQQLLQ MQQLQQQHLL 201 250 bmy_11335T0/1-667 -SPSQGLGVP KWWGPHAFLS PRQPS--LSL PPIAAVCPTD LPQLWKGEGA ENSTTRP00000015527/1-565 NLQRQGL--- ------VSLQ PGQAA----- -----VCPTD LPQLWKGEGA ENSP00000362151/1-680 NLQRQGL--- ------VSLQ PNQASGPLQT LPQAAVCPTD LPQLWKGEGA ENSBTAP00000018905/1-825 NLQRQGL--- ------VSLQ PSQASGPLQT LPQAAVCPTD LPQLWKGEGA BACU020437/1-560 NLQRQGL--- ------VSLQ PSQAS----- -----VCPTD LPQLWKGEGA 251 300 bmy_11335T0/1-667 PGQPAEDSIK QEGLDLTGTA TTATSFAAPP KVSPPLSHHT LPNGQPTVLT ENSTTRP00000015527/1-565 PGQPAEDSVK QEGLDLTGTA TTATSFAAPP KVSPPLSHHT LPNGQPTVLT ENSP00000362151/1-680 PGQPAEDSVK QEGLDLTGTA ATATSFAAPP KVSPPLSHHT LPNGQPTVLT ENSBTAP00000018905/1-825 PGQPAEDSVK QEGLDLTGTA TTATSFAAPP KVSPPLSHHT LPNGQPTVLT BACU020437/1-560 PGQPAEDSVK QEGLDLTGTA TTATSFAAPP KVSPPLSHHT LPNGQPTVLT 301 350 bmy_11335T0/1-667 PRRDSSSHEE TPGSHPLYGH GECKWPGCET LCEDLGQFIK HLNTEHALDD ENSTTRP00000015527/1-565 PRRDSSSHEE TPGSHPLYGH GECKWPGCET LCEDLGQFIK HLNTEHALDD ENSP00000362151/1-680 SRRDSSSHEE TPGSHPLYGH GECKWPGCET LCEDLGQFIK HLNTEHALDD ENSBTAP00000018905/1-825 PRRDSSSHEE TPGSHPLYGH GECKWPGCET LCEDLGQFIK HLNTEHALDD BACU020437/1-560 PRRDSSSHEE TPGSHPLYGH GECKWPGCET LCEDLGQFIK HLNTEHALDD 351 400 bmy_11335T0/1-667 RSTAQCRVQM QVVQQLEIQL AKESERLQAM MAHLHMRPSE PKPFSQPVSD ENSTTRP00000015527/1-565 RSTAQCRVQM QVVQQLEIQL AKESERLQAM MAHLHMRPSE PKPFSQP--- ENSP00000362151/1-680 RSTAQCRVQM QVVQQLEIQL AKESERLQAM MAHLHMRPSE PKPFSQP--- ENSBTAP00000018905/1-825 RSTAQCRVQM QVVQQLEIQL AKESERLQAM MTHLHMRPSE PKPFSQP--- BACU020437/1-560 RSTAQCRVQM QVVQQLEIQL AKESERLQAM MAHLHMRPSE PKPFSQP--- 401 450 bmy_11335T0/1-667 SPLPAALQEP PPRYPPTPDP SSFRHWSQHP PRCSQLNPVP GSSSFSKVTV ENSTTRP00000015527/1-565 ---------- ---------- ---------- -----LNPVP GSSSFSKVTV ENSP00000362151/1-680 ---------- ---------- ---------- -----LNPVP GSSSFSKVTV ENSBTAP00000018905/1-825 ---------- ---------- ---------- ---------- -------VTV BACU020437/1-560 ---------- ---------- ---------- -----LNPVP GSSSFSKVTV 451 500 bmy_11335T0/1-667 SAADSFPDGL VHPPTSAAAP VTPLRPPGLG SASLHSGGPT RRRSSDKFCS ENSTTRP00000015527/1-565 SAADSFPDGL VHPPTSAAAP VTPLRPPGLG SASLHSGGPA RRRTSDKFCS ENSP00000362151/1-680 SAADSFPDGL VHPPTSAAAP VTPLRPPGLG SASLHGGGPA RRRSSDKFCS ENSBTAP00000018905/1-825 SAADSFPDGL AHPPTSAAAP VTPLRPPGLG SASLHSGGPA RRRSSDKFCS BACU020437/1-560 SAADSFPDGL VHPPTSAAAP VTPLRPPGLS SASLHSGGPA RRRSSDKFCS 501 550 bmy_11335T0/1-667 PISSELAQNH EFYKNADVRP PFTYASLIRQ AILETPDRQL TLNEIYNWFT ENSTTRP00000015527/1-565 PISSELAQNH EFYKNADVRP PFTYASLIRQ AILETPDRQL TLNEIYNWFT ENSP00000362151/1-680 PISSELAQNH EFYKNADVRP PFTYASLIRQ AILETPDRQL TLNEIYNWFT ENSBTAP00000018905/1-825 PISSELAQNH EFYKNADVRP PFTYASLIRQ AILETPDRQL TLNEIYNWFT BACU020437/1-560 PISSELAQNH EFYKNADVRP PFTYASLIRQ AILETPDRQL TLNEIYNWFT 551 600 bmy_11335T0/1-667 RMFAYFRRNT ATWKNAVRHN LSLHKCFVRV ENVKGAVWTV DEREYQKRRP ENSTTRP00000015527/1-565 RMFAYFRRNT ATWKNAVRHN LSLHKCFVRV ENVKGAVWTV DEREYQKRRP ENSP00000362151/1-680 RMFAYFRRNT ATWKNAVRHN LSLHKCFVRV ENVKGAVWTV DEREYQKRRP ENSBTAP00000018905/1-825 RMFAYFRRNT ATWKNAVRHN LSLHKCFVRV ENVKGAVWTV DEREYQKRRP BACU020437/1-560 RMFAYFRRNT ATWKNAVRHN LSLHKCFVRV ENVKGAVWTV DEREYQKRRP 601 650 bmy_11335T0/1-667 PKMTGSPTLV KNMISGLSYG ALNASYQAAL AESSFPLLNS PGMLNPGSAS ENSTTRP00000015527/1-565 PKMTGSPTLV KNMISGLSYG ALNASYQ--- ---------- ---------- ENSP00000362151/1-680 PKMTGSPTLV KNMISGLSYG ALNASYQAAL AESSFPLLNS PGMLNPGSAS ENSBTAP00000018905/1-825 PKMTGSPTLV KNMISGLSYG TLNASYQAAL AESSFPLLNS PGMLNPGSAS BACU020437/1-560 PKMTGSPTLV KNMISGLSYG ALNASYQ--- ---------- ---------- 651 700 bmy_11335T0/1-667 SLLPLSHDDV GAPMEPLPSN GSSSPPRLSP PQYSHQVQVK EEPAEAEEDR ENSTTRP00000015527/1-565 ---------- ---------- ---------- ---------- ---------- ENSP00000362151/1-680 SLLPLSHDDV GAPVEPLPSN GSSSPPRLSP PQYSHQVQVK EEPAEAEEDR ENSBTAP00000018905/1-825 SLLPLGHDDA GAPVEPLPSN GSSSPPRLSP PQYSHQVQVK EEPAEAEEDR BACU020437/1-560 ---------- ---------- ---------- ---------- ---------- 701 750 bmy_11335T0/1-667 RPGPPLGPPN PSTSGPPEDR DLEEELPGEE LS-------- ---------- ENSTTRP00000015527/1-565 ---------- ---------- ---------- ---------- ---------- ENSP00000362151/1-680 QPGPPLGAPN PSASGPPEDR DLEEELPGEE LS-------- ---------- ENSBTAP00000018905/1-825 RPGPPMGPPN PSTAGPPEDR DLEEELPGEE LSLFPLSPPT SPAPHAHPSP BACU020437/1-560 ---------- ---------- ---------- ---------- ---------- 751 800 bmy_11335T0/1-667 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015527/1-565 ---------- ---------- ---------- ---------- ---------- ENSP00000362151/1-680 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018905/1-825 RLEALPDLSY CFKPKFTVSV GGQDPLSPPP PQGPWDSVEA GGPAHLPSAP BACU020437/1-560 ---------- ---------- ---------- ---------- ---------- 801 850 bmy_11335T0/1-667 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015527/1-565 ---------- ---------- ---------- ---------- ---------- ENSP00000362151/1-680 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018905/1-825 VQQRGGDFRP QLPLQGSRPL GPWARGALLP TLGCFLGALL TPLSRTKFRI BACU020437/1-560 ---------- ---------- ---------- ---------- ---------- 851 900 bmy_11335T0/1-667 ---------- ---------- ---------- ---- ENSTTRP00000015527/1-565 ---------- ---------- ---------- ---- ENSP00000362151/1-680 ---------- ---------- ---------- ---- ENSBTAP00000018905/1-825 TLGVWIPAKE LEKKVRLSPQ TPYGGPQLKA KDWV BACU020437/1-560 ---------- ---------- ---------- ----