KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:00 2014 Check: 00 .. Name: ENSTTRP00000002202/1-803 Len: 1538 Check: 464 Weight: 1.00 Name: ENSP00000436552/1-1437 Len: 1538 Check: 3095 Weight: 1.00 Name: BACU010146/1-1329 Len: 1538 Check: 4036 Weight: 1.00 Name: bmy_12578T0/1-1396 Len: 1538 Check: 6837 Weight: 1.00 Name: ENSBTAP00000018907/1-1325 Len: 1538 Check: 1117 Weight: 1.00 // 1 50 ENSTTRP00000002202/1-803 ---------- ---------- ---------- ---------- ---------- ENSP00000436552/1-1437 MIWYVATFIA SVIGTRGLAA EGAHGLREEP EFVTARAGES VVLRCDVIHP BACU010146/1-1329 ---------- ---------- ------REEP EFVTARAGES VVLRCDVVHP bmy_12578T0/1-1396 ---------- ---------- --AHGLREEP EFVTARAGES VVLRCDVVHP ENSBTAP00000018907/1-1325 ---------- ---------- -GAHGLREEP EFVTARAGES VVLRCDVVHP 51 100 ENSTTRP00000002202/1-803 ---------- ---------- ---------- ---------- ---------- ENSP00000436552/1-1437 VTGQPPPYVV EWFKFGVPIP IFIKFGYYPP HVDPEYAGRA SLHDKASLRL BACU010146/1-1329 VTGQPPPYVV EWFKFGVPIP IFIKFGYYPP HVDPEYAGRA SLHDKASLRL bmy_12578T0/1-1396 VTGQPPPYVV EWFKFGVPIP IFIKFGYYPP HVDPEYAGRA SLHDKASLRL ENSBTAP00000018907/1-1325 VTGQPPPYVV EWFKFGVPIP IFIKFGYYPP HVDPEYAGRA SLHDKASLRL 101 150 ENSTTRP00000002202/1-803 ---------- ---------- ---------- ---------- ---------- ENSP00000436552/1-1437 EQVRSEDQGW YECKVLMLDQ QYDTFHNGSW VHLTINAPPT FTETPPQYIE BACU010146/1-1329 EQLRAEDQGW YECKVLLLDQ QYDTFHNGSW VHLTIHAPPT FTETPPQYIE bmy_12578T0/1-1396 EQLRAEDQGW YECKVLLLDQ QYDTFHNGSW VHLTIH---- --ETPPQYIE ENSBTAP00000018907/1-1325 EQVRAEDQGW YECKVLLLDQ QYDTFHNGSW VHLTIHAPPT FTETPPQYIE 151 200 ENSTTRP00000002202/1-803 ---------- ---------- ---------- ---------- ---------- ENSP00000436552/1-1437 AKEGGSITMT CTAFGNPKPI VTWLKEGTLL GASGKYQVSD GSLTVTSVSR BACU010146/1-1329 AKEGSSVTMT CTAFGNPKPI VTWLKEGTLL GASGKYQVSD GSLTVTSVSR bmy_12578T0/1-1396 AKEGSSVTMT CTAFGNPKPI VTWLKEGMLL GASGKYQVSD GSLTVTSVSR ENSBTAP00000018907/1-1325 AKEGGSVTMT CIAFGNPKPI VTWLKEGTLL GASNKYQVSE GSLTVTSVSR 201 250 ENSTTRP00000002202/1-803 ---------- ---------- ---------- ---------- ---------- ENSP00000436552/1-1437 EDRGAYTCRA YSIQGEAVHT THLLVQGPPF IVSPPENITV NISQDALLTC BACU010146/1-1329 EDRGAYTCRA YSIQGEAIHT THLLVQGPPF IVSPPENITV NISQDALPSC bmy_12578T0/1-1396 EDRGAYTCRA YSIQGEAIHT THLLVQGPPF IVSPPENITV NISQDALLTC ENSBTAP00000018907/1-1325 EDRGAYTCRA YSIQGEAVHT THLLVQGPPF IVSPPENITA HISQDALLTC 251 300 ENSTTRP00000002202/1-803 ---------- ---------- ---------- ---------- ---------- ENSP00000436552/1-1437 RAEAYPGNLT YTWYWQDENV YFQNDLKLRV RILIDGTLII FRVKPEDSGK BACU010146/1-1329 RAEAYPGNLT YTWYWQDENV YFQNDLKLRV RILIDGTLII FRVKPEDAGK bmy_12578T0/1-1396 RAEAYPGNLT YTWYWQDENV YFQNDLKLRV RILIDGTLII FRVKPEDAGK ENSBTAP00000018907/1-1325 RAD-YPGNLT YTWHWKDENV YFQNDLKLRV RILIDGTLII FRVKPEDAGK 301 350 ENSTTRP00000002202/1-803 ---------- ---------- ---------- ---------- ---------- ENSP00000436552/1-1437 YTCVPSNSLG RSPSASAYLT VQYP--ARVL NMPPVIYVPV GIHGYIRCPV BACU010146/1-1329 YTCVPSNSLG RSPSASAYLT VQSEDNPQLL SFEPQVLKSC EAQGKLCGPR bmy_12578T0/1-1396 YTCVPSNSLG RSPSASAYLT VQYP--ARVL NMPPVIYVPV GIHGYIRCPV ENSBTAP00000018907/1-1325 YTCVPSNSLG RSPSASAYLT VQYP--ARVL NMPPVIYVPV GIHGYIRCPV 351 400 ENSTTRP00000002202/1-803 ---------- ---------- ---------- ---------- ---------- ENSP00000436552/1-1437 DA-EPPATVV KWNKDGRPLQ VEK------- ---------- ---------- BACU010146/1-1329 KAVRPKESCV TQSPRPVPPR REKAFISYLL CAQAV----- ---------- bmy_12578T0/1-1396 DA-EPPATVV KWNKDGRPLQ VEKVPEGRFW ESKAVSRGPS LAGPGRSRSA ENSBTAP00000018907/1-1325 DA-EPPATVV KWNKDGRPLQ VEK------- ---------- ---------- 401 450 ENSTTRP00000002202/1-803 ---------- ---------- ---------- ---------- ---------- ENSP00000436552/1-1437 ---------- ---------- ---------- -------NLG WTLMEDGSIR BACU010146/1-1329 ---------- ---------- ---------- -----KQNLG WTLLEDGSIR bmy_12578T0/1-1396 RRRTQPAHGG AAQVRLRGLG RAPAPDPSSP ALSVPQQNLG WTLLEDGSIR ENSBTAP00000018907/1-1325 ---------- ---------- ---------- -------NLG WTLMEDGSIR 451 500 ENSTTRP00000002202/1-803 ---------- ---------- ---------- ---------- ---------- ENSP00000436552/1-1437 IEEATEEALG TYTCVPYNTL GTMGQSAPAR LVLKDPPYFT VLPGWEYRQE BACU010146/1-1329 IEEATEEAIG TYTCVPYNTL GTMGQSSPAR LVLKDPPYFT VLPGWEYRQE bmy_12578T0/1-1396 IEEATEEAIG TYTCVPYNTL GTMGQSSPAR LVLKDPPYFT VLPGWEYRQE ENSBTAP00000018907/1-1325 IEEATEEALG TYTCVPYNTL GTMGQSAPAR LVLKDPPYFT VLPGWEYRQE 501 550 ENSTTRP00000002202/1-803 ---------- ---------- ---------- ---------- ---------- ENSP00000436552/1-1437 AGRELLIPCA AAGDPFPVIT WRKVGKPSRS KHSALPSGSL QFRALSKEDH BACU010146/1-1329 AGRELLIPCA AAGDPFPVIT WRKVGKPSRS KHNALPSGSL QFRALSKEDH bmy_12578T0/1-1396 AGRELLIPCA AAGDPFPVIR WRKVGKPSRS KHNALPSGSL QFRALSKEDH ENSBTAP00000018907/1-1325 AGRELLIPCA AAGDPFPVIT WRKVGKPSRS KHNTLPSGSL QFRALSKEDH 551 600 ENSTTRP00000002202/1-803 ---------- ---------- ---------- ---------- ---------- ENSP00000436552/1-1437 GEWECVATNV VTSITASTHL TVIGTSPHAP GSVRVQVSMT TANVSWEPGY BACU010146/1-1329 GEWECVATNV VTSITASTHL TVIGTSPHAP GSVRVQVSMT TANVSWEPGY bmy_12578T0/1-1396 GEWECVATNV VTSITASTHL TVIGTSPHAP GSVRVQVSMT TANVSWEPGY ENSBTAP00000018907/1-1325 GEWECIATNV VTSITASTHL TVIGTSPHAP GSVRVQVSMT TANVSWEPGY 601 650 ENSTTRP00000002202/1-803 ---------- ---------- ---------- ---------- -----MKRAR ENSP00000436552/1-1437 DGGYEQTFSV W--------- ---------- ---------- -----MKRAQ BACU010146/1-1329 DGGFEQTFSV WYGPL----- ---------- ---------- -----MKRAQ bmy_12578T0/1-1396 DGGFEQTFSV WYGPLAPNSS TCVPSRVSSV THPAPLSPIL SLSGRMKRAQ ENSBTAP00000018907/1-1325 DGGFEQTFSV W--------- ---------- ---------- -----MKRAQ 651 700 ENSTTRP00000002202/1-803 FGPHDWLSLP VPPGPSWLLV DALEPETAYQ FSVLAQNKLG TSAFSEVVTV ENSP00000436552/1-1437 FGPHDWLSLP VPPGPSWLLV DTLEPETAYQ FSVLAQNKLG TSAFSEVVTV BACU010146/1-1329 FGPHDWLSLP VPPGPSWLLV DALEPETAYQ FSVLAQNKLG TSAFSELVTV bmy_12578T0/1-1396 FGPHDWLSVP VPPGPSWLLV EALEPETAYQ FSVLAQNKLG TSAFSELVTV ENSBTAP00000018907/1-1325 FGPHDWLSLP VPPGPSWLLV EALEPETAYQ FSVLAQNKLG TSAFSEVVTV 701 750 ENSTTRP00000002202/1-803 NTLAFPVTTP EPLVLVTPPR CLTANRTQQG VLLSWLPPAN HSFPIDRYIL ENSP00000436552/1-1437 NTLAFPITTP EPLVLVTPPR CLIANRTQQG VLLSWLPPAN HSFPIDRYIM BACU010146/1-1329 NTLAFPVTTP EPLVLVTPPR CLTANRTQQG VLLSWLPPAN HSFPIDRYIL bmy_12578T0/1-1396 NTLAFPVTTP EPLVLVTPPR CLTANRTQQG VLLSWLPPAN HSFPIDRYIL ENSBTAP00000018907/1-1325 NTLAFPVTTP EPLVLVTPPR CLTANRTQQG VLLSWLPPAN HSFPIDRYIL 751 800 ENSTTRP00000002202/1-803 EFRVGERWET LDDAIPGTDG DFFARDLSQD TWYEFRVLAV MQDLISEPSN ENSP00000436552/1-1437 EFRVAERWEL LDDGIPGTEG EFFAKDLSQD TWYEFRVLAV MQDLISEPSN BACU010146/1-1329 EFRVGERWET LDDAIPGTDA DFFARDLSQD TWYEFRVLAV MQDLISEPSN bmy_12578T0/1-1396 EFRVGERWET LDDAIPGTDG EFFARDLSQD TWYEFRVLAV MQDLISEPSN ENSBTAP00000018907/1-1325 EFRVGERWET LDDGIPGTEL DFFARDLSQD TWYEFRVLAV MQDLISEPSN 801 850 ENSTTRP00000002202/1-803 IAGVSSTDIF PQPDLTEDGL ARPVLAGIVA TICFLAAAIL FSTLAACFVN ENSP00000436552/1-1437 IAGVSSTDIF PQPDLTEDGL ARPVLAGIVA TICFLAAAIL FSTLAACFVN BACU010146/1-1329 IAGVSSTDIF PQPDLTEDGL ARPVLAGIVA TICFLAAAIL FSTLAACFVN bmy_12578T0/1-1396 IAGVSSTDIF PQPDLTDDGL ARPVLAGIVA TICFLAAAIL FSTLAACFVN ENSBTAP00000018907/1-1325 IAGVSSTDIF PQPDLTDEGL ARPVLAGIVA TICFLAAAIL FSTLAACFVN 851 900 ENSTTRP00000002202/1-803 RQRKRKLKRK KDPPLSITHC RKSLESPLSS GKVSPESIRT LRAPSESSDD ENSP00000436552/1-1437 KQRKRKLKRK KDPPLSITHC RKSLESPLSS GKVSPESIRT LRAPSESSDD BACU010146/1-1329 KQRKRKLKRK KDPPLSITHC RKSLESPLSS GKVSPESIRT LRAPSESSDD bmy_12578T0/1-1396 KQRKRKLKRK KDPPLSITHC RKSLESPLSS GKVSPESIRT LRAPSESSDD ENSBTAP00000018907/1-1325 KQRKRKLKRK KDPPLSITHC RKSLESPLSS GKVSPESIRT LRAPSESSDD 901 950 ENSTTRP00000002202/1-803 QAQPAAKRML SPVREKELSL YKKTKRAISS KKYSVAKAEA EAEATTPIEL ENSP00000436552/1-1437 QGQPAAKRML SPTREKELSL YKKTKRAISS KKYSVAKAEA EAEATTPIEL BACU010146/1-1329 QGQPAAKRML SPVREKELSL YKKTKRAISS KKYSVAKAEA EAEATTPIEL bmy_12578T0/1-1396 QGQPAAKRML SPVREKELSL YKKTKRAISS KKYSVAKAEA EAEATTPIEL ENSBTAP00000018907/1-1325 QGQLAAKRML SPSREKELSL YKKTKRAISS KKYSVAKAEA EAEATTPIEL 951 1000 ENSTTRP00000002202/1-803 ISRGPDGRFV MDPSEVEPSA KARRIEGFPF AEETDMYPEF RQSDEENEDP ENSP00000436552/1-1437 ISRGPDGRFV MDPAEMEPSL KSRRIEGFPF AEETDMYPEF RQSDEENEDP BACU010146/1-1329 ISRGPDGRFV MDPSEAEPSA KARRIEGFPF AEETDMYPEF RQSDEENEDP bmy_12578T0/1-1396 ISRGPDGRFV MDPSEVEPSA KARRIEGFPF AEETDMYPEF RQSDEENEDP ENSBTAP00000018907/1-1325 ISRGPDGRFV MDPSEVEPSA KARRIEGFPF AEETDMYPEF RQSDEENEDP 1001 1050 ENSTTRP00000002202/1-803 LVPASVAALK SQLTPLSSSQ ESYLPPPAYS PRFQPRSLEG PGGLEGRLQA ENSP00000436552/1-1437 LVPTSVAALK SQLTPLSSSQ ESYLPPPAYS PRFQPRGLEG PGGLEGRLQA BACU010146/1-1329 LVPASVAALK SQLTPLSSSQ ESYLPPPAYS PRFQPRSLEG PGGLEGRLQA bmy_12578T0/1-1396 LVPASVAALK SQLTPLSSSQ ESYLPPPAYS PRFQPRSLEG PGGLEGRLQA ENSBTAP00000018907/1-1325 LVPTSVAALK SQLTPLSSSQ ESYLPPPAYS PRFQPRGLEG PGGLESRLQA 1051 1100 ENSTTRP00000002202/1-803 TGQARPPAPR PFHHGQYYGY LSSSSPGEVE PPPFYMPEVG SPLSSVMSSP ENSP00000436552/1-1437 TGQARPPAPR PFHHGQYYGY LSSSSPGEVE PPPFYVPEVG SPLSSVMSSP BACU010146/1-1329 TGQARPPAPR PFHPGQYYGY LSSSSPGEVE PPPFYMPEVG SPLSSVMSSP bmy_12578T0/1-1396 TGQARPPAPR PFHHGQYYGY LSSSSPGEVE PPPFYMPEVG SPLSSVMSSP ENSBTAP00000018907/1-1325 TGQARPPAPR PFQHGQYYGY LSSSSPGEVE PPPFYMPEVG SPLSSVMSSP 1101 1150 ENSTTRP00000002202/1-803 PLHTEGPFGH PAIPEENGEN ASNSTLPLTQ TPTGGRSPEP WGRPEFPFGG ENSP00000436552/1-1437 PLPTEGPFGH PTIPEENGEN ASNSTLPLTQ TPTGGRSPEP WGRPEFPFGG BACU010146/1-1329 PLHAEGPFGH ATIPEENGEN ASNSTLPLTQ TPTGGRSPEP WGRPEFPFGG bmy_12578T0/1-1396 PLHAEGPFGH PTIPEENGEN ASNSTLPLTQ TPTGGRSPEP WGRPEFPFGG ENSBTAP00000018907/1-1325 PLHAEGPFGH PTIPEENGEN ASNSTLPLTQ TPTGGRSPEP WGRPEFPFGG 1151 1200 ENSTTRP00000002202/1-803 LETPAVVFPH QLHPCDVAES LQPAAGLPRG LPPASLPVPA AYPGILSLEA ENSP00000436552/1-1437 LETPAMMFPH QLPPCDVPES LQPKAGLPRG LPPTSLQVPA AYPGILSLEA BACU010146/1-1329 LETPAVMFPH QLHPCDVAES LQPAAGLPRG LPPASLQVPA AYPGILSLEA bmy_12578T0/1-1396 LETPAVMFPH QLHPCDVAES LQPAAGLPRG LPPASLQVPA AYPGILSLEA ENSBTAP00000018907/1-1325 LETPAMMFPH QLHPCEVGES LQPATGLPRG LPPASLQMPA AYPGILSLEA 1201 1250 ENSTTRP00000002202/1-803 PKGWAGKAPS RGPAPVPPAT KWQDRPVQPL VSQGQLRHTS QGMGIPVXXX ENSP00000436552/1-1437 PKGWAGKSPG RGPVPAPPAA KWQDRPMQPL VSQGQLRHTS QGMGIPVLPY BACU010146/1-1329 PTGWAGKAPG RGPAPVPPAA KWQDRPVQPL ---------- ---------- bmy_12578T0/1-1396 PTGWAGKAPG RGPAPVPPAA KWQDRPVQPL VSQGQLRHTS QGMGIPVLPY ENSBTAP00000018907/1-1325 PKGWAGKSPG RGPAPVPPTA KWQDRPVQPL VSQGQLRHTS QGMGIPVLPY 1251 1300 ENSTTRP00000002202/1-803 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS ENSP00000436552/1-1437 PEPAEPGAHG GPSTFGLDTR WYEPQPRPRP SPRQARRAEP SLHQVVLQPS BACU010146/1-1329 ---------- ---------- ---------- ---------- ---------- bmy_12578T0/1-1396 PEPAEPGAHG SPSTLGLDAP WYEPQPRPRP SPRQARRTEP SLHQVVLQPS ENSBTAP00000018907/1-1325 PEPAEPGAHG GPSALGLDTR WYEPQPRPRP SPRQARRSEP SLHQVVLQPS 1301 1350 ENSTTRP00000002202/1-803 RLSPLTQSPL GSRTSSPELA ARARPRPGLL QPAEVSETAL QPPAAVSFSR ENSP00000436552/1-1437 RLSPLTQSPL SSRTGSPELA ARARPRPGLL QQAEMSEITL QPPAAVSFSR BACU010146/1-1329 ---------- ---------- ---------- -PAEVSESAL QPPAAVSFSR bmy_12578T0/1-1396 RLSPLTQSPL GSRTSSPELA ARARPRPGLL QPAEVSETAL QPPAAVSFSR ENSBTAP00000018907/1-1325 RLSPLTQSPI GSRTGSPELA ARARPRPGLL QQAEMSEITL QPPAAVSFSR 1351 1400 ENSTTRP00000002202/1-803 KSTPSTGSPS QSSRSGSPSY RPTVGFTALA TGYPSPPPG- -PAGPVDHLD ENSP00000436552/1-1437 KSTPSTGSPS QSSRSGSPSY RPAMGFTTLA TGYPSPPPGP APAGPGDSLD BACU010146/1-1329 KSTPSTGSPS QSSRSGSPSY RPTVGFTTLA TGYPSPPPG- -PAGPVDHLD bmy_12578T0/1-1396 KSTPSTGSPS QSSRSGSPSY RPTVGFTTLA TGYPSPPPG- -PAGPVDHLD ENSBTAP00000018907/1-1325 KSTPSTGSPS QSSRSGSPSF RPTVGFTTLA TAYPSPPPG- -PTGPADSLD 1401 1450 ENSTTRP00000002202/1-803 VFGQTPSPRR VGEELLRPEP PPPPLPTAG- ---------- ---------- ENSP00000436552/1-1437 VFGQTPSPRR TGEELLRPET PPPTLPTSGT LPPAPGNAAA PERLEALKYQ BACU010146/1-1329 VFGQTPSPRR AGEELLRPEP PPPPLPAAGT HPPAPGNAAV PERLEALKYQ bmy_12578T0/1-1396 VFGQTPSPRR VGEELLRPEP PPPPLPAAG- ---------- ---------- ENSBTAP00000018907/1-1325 VFGQTPSPRR LGEELLRPEP PAPPLPSSG- ---------- ---------- 1451 1500 ENSTTRP00000002202/1-803 ---------- -----ELQTD RQAPAISRPG GAHCKL---- ---------- ENSP00000436552/1-1437 RIKKPKKSSK GSSKSKKRSD DSASQTQQLP NSQVLWPDEA VCLRKKKRHS BACU010146/1-1329 RIKKPKKSSK GSSKSKKRSD GSASQAQNLP NSQVLWPDEA VCLRRKKRHS bmy_12578T0/1-1396 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018907/1-1325 ---------- -----DIQTD RQAPAISRPG GAHCKW---- ---------- 1501 1550 ENSTTRP00000002202/1-803 ---------- ---------- ---------- -------- ENSP00000436552/1-1437 RPDPFARLSD LCHRQLPEDQ TAILNSVDHD DPGHATLL BACU010146/1-1329 RPDPFARLSD LCHRQLPEDQ TAILSSVEHD DPSHATLL bmy_12578T0/1-1396 ---------- ---------- ---------- -------- ENSBTAP00000018907/1-1325 ---------- ---------- ---------- --------