KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:03 2014 Check: 00 .. Name: bmy_19363T0/1-628 Len: 792 Check: 5340 Weight: 1.00 Name: ENSP00000387710/1-756 Len: 792 Check: 7932 Weight: 1.00 Name: ENSTTRP00000005696/1-709 Len: 792 Check: 159 Weight: 1.00 Name: BACU015034/1-710 Len: 792 Check: 5174 Weight: 1.00 Name: ENSBTAP00000018947/1-723 Len: 792 Check: 616 Weight: 1.00 // 1 50 bmy_19363T0/1-628 ---------- ---MGDEKSE FLTYVCLSFP KEIKFAHAIY LVYVRLNLKQ ENSP00000387710/1-756 MFEEKASSPS GKMGGEEKP- ---------- ---------- ---------- ENSTTRP00000005696/1-709 ---------- ---GGVRNP- ---------- ---------- ---------- BACU015034/1-710 ---------- ---MGDEKS- ---------- ---------- ---------- ENSBTAP00000018947/1-723 MSEEQASSPS AKMGDEEKP- ---------- ---------- ---------- 51 100 bmy_19363T0/1-628 ESCEQVGASE EKRKEGGKKK NKEGSGDGGR AELNPWPEYI NIRLEMYNKL ENSP00000387710/1-756 -----IGAGE EKQKEGGKKK NKEGSGDGGR AELNPWPEYI YTRLEMYNIL ENSTTRP00000005696/1-709 -----VGASE EKRKEGGKKK NKEGSGDGGR AELNPWPEYI NTRLEMYNKL BACU015034/1-710 -----VGASE EKRKEGGKKK NKEGSGDGGR AELNPWPEYI NIRLEMYNKL ENSBTAP00000018947/1-723 -----VGAGE EKQKEGSKKK NKEGSGDGGR AELNPWPEYI NTRLEMYNKL 101 150 bmy_19363T0/1-628 KAEHDSILAE KEEKDSKPIK VTLPDGKQLD AESWKTTPYQ IACGIS---- ENSP00000387710/1-756 KAEHDSILAE KAEKDSKPIK VTLPDGKQVD AESWKTTPYQ IACGISHTAS ENSTTRP00000005696/1-709 KAEHDSILAE KAEKDSKPIK VTLPDGKQLD AESWKTTPYQ IACGIS---- BACU015034/1-710 KAEHDSILAE KEEKDSKPIK VTLPDGKQLD AESWKTTPYQ IACGIS---- ENSBTAP00000018947/1-723 KAEHDSILAE KAEKDSKPIK VTLPDGKQVD AESWKTTPYQ IACGIS---- 151 200 bmy_19363T0/1-628 ---------- ---------- ---------Q GLADNTVIAK VNKVVWDLDR ENSP00000387710/1-756 CKNLSSLASL LASVAIPSSG MPWPPLFFLQ GLADNTVIAK VNNVVWDLDR ENSTTRP00000005696/1-709 ---------- ---------- ---------Q GLADNTVIAK VNKVLWDLDR BACU015034/1-710 ---------- ---------- ---------Q GLADNTVIAK VNKVVWDLDR ENSBTAP00000018947/1-723 ---------- ---------- ---------Q GLADNTVIAK VNKAVWDLDR 201 250 bmy_19363T0/1-628 PLEEDCTLEL LKFEDEEAQA VYWHSSAHIM GEAMERVYGG CLCYGPPIEN ENSP00000387710/1-756 PLEEDCTLEL LKFEDEEAQA VYWHSSAHIM GEAMERVYGG CLCYGPPIEN ENSTTRP00000005696/1-709 PLEEDCTLEL LKFEDEEAQA XXXXXXXXXX XXXMERVYGG CLCY-SPIGN BACU015034/1-710 PLEEDCTLEL LKFEDEEAQA VYWHSSAHIM GEAMERVYGG CLCYGPPIEN ENSBTAP00000018947/1-723 PLEEDCTLEL LKFEDEEAQA VYWHSSAHIM GEAMERVYGG CLCYGPPIEN 251 300 bmy_19363T0/1-628 GFYYDMYLEE GGVSSNDFSS LEALCKKIIK EKQAFERLE- ---------- ENSP00000387710/1-756 GFYYDMYLEE GGVSSNDFSS LEALCKKIIK EKQAFERLEV KKETLLAMFK ENSTTRP00000005696/1-709 GFYYDMYLEE GGVSSNDFSS LEALCKKIIK EKQAFERLEV KKETLLEMFK BACU015034/1-710 GFYYDMYLEE GGVSSNDFSS LEALCKKIIK EKQAFERLEV KKETLLEMFK ENSBTAP00000018947/1-723 GFYYDMYLEE GGVSSNDFSS LETLCKKIIK EKQAFERLEV KKETLLEMFK 301 350 bmy_19363T0/1-628 YNKFKCRILN EKVNTPTTTV YRCGPLIDLC RGPHVRHTGK IKTLKIHKKH ENSP00000387710/1-756 YNKFKCRILN EKVNTPTTTV YRCGPLIDLC RGPHVRHTGK IKALKIHKNS ENSTTRP00000005696/1-709 YNKFKCRILN EKVNTPTTTV YRCGPLIDLC RGPHVRHTGK IKTLKIHKNS BACU015034/1-710 YNKFKCRILN EKVNTPTTTV YRCGPLIDLC RGPHVRHTGK IKTLKIHKNS ENSBTAP00000018947/1-723 YNKFKCRILN EKVNTPTTTV YRCGPLIDLC RGPHVRHTGK IKTLKIHKNS 351 400 bmy_19363T0/1-628 VS----KSTA DELTSL---- ---------- ---------- ---------- ENSP00000387710/1-756 STYWEGKADM ETLQRIYGIS FPDPKMLKEW EKFQEEAKNR DHRKIGRDQE ENSTTRP00000005696/1-709 STYWEGKADM ETLQRIYGIS FPDPKMLKEW EKFQEEAKNR DHRKIGRDQE BACU015034/1-710 STYWEGKADM ETLQRIYGIS FPDPKMLKEW EKFQEEAKNR DHRKIGRDQE ENSBTAP00000018947/1-723 STYWEGKSDM ETLQRIYGIS FPDPKMLKEW EKFQEEAKNR DHRKIGRDQE 401 450 bmy_19363T0/1-628 ---------- ---------- ---------- ---------- ---------- ENSP00000387710/1-756 LYFFHELSPG SCFFLPKGAY IYNALIEFIR SEYRKRGFQE VVTPNIFNSR ENSTTRP00000005696/1-709 LYFFHELSPG SCFFLPKGAY IYNTLIEFIR SEYRKRGFQE VITPNIYNSR BACU015034/1-710 LYFFHELSPG SCFFLPKGAY IYNTLIEFIR SEYRKRGFQE VVTPNIYNSR ENSBTAP00000018947/1-723 LYFFHELSPG SCFFLPKGAY IYNTLIEFIR SEYRKRGFQE VVTPNIYNSR 451 500 bmy_19363T0/1-628 ---------- --ENLPCLEA AH-FLSLKV- -----GLMFD HRPRSWRELP ENSP00000387710/1-756 LWMTSGHWQH YSENMFSFEV EKELFALKPM NCPGHCLMFD HRPRSWRELP ENSTTRP00000005696/1-709 LWMTSGHWQH YSENMFSFEV EKELFALKPM NCPGHCLMFD HRPRSWRELP BACU015034/1-710 LWMTSGHWQH YSDNMFSFEV EKELFALKPM NCPGHCLMFD HRPRSWRELP ENSBTAP00000018947/1-723 LWVTSGHWEH YSENMFSFEV EKELFALKPM NCPGHCLMFD HRPRSWRELP 501 550 bmy_19363T0/1-628 LRVADFGVLH RNELSGALTG LTRVRRFQQD DAHIFCAIEQ IEDEIKGCLD ENSP00000387710/1-756 LRLADFGVLH RNELSGALTG LTRVRRFQQD DAHIFCAMEQ IEDEIKGCLD ENSTTRP00000005696/1-709 LRVADFGVLH RNELSGALTG LTRVRRFQQD DAHIFCAIEQ IEDEIKGCLD BACU015034/1-710 LRVADFGVLH RNELSGALTG LTRVRRFQQD DAHIFCAIEQ IEDEIKGCLD ENSBTAP00000018947/1-723 LRVADFGVLH RNELSGALTG LTRVRRFQQD DAHIFCAMEQ IEDEIKGCLD 551 600 bmy_19363T0/1-628 FLRTVYSIFG FSFKLNLSTR PEKFLGDIEV WNQAEKQLEN SLNEFGEKWE ENSP00000387710/1-756 FLRTVYSVFG FSFKLNLSTR PEKFLGDIEV WDQAEKQLEN SLNEFGEKWE ENSTTRP00000005696/1-709 FLRTVYSIFG FSFKLNLSTR PEKFLGDIEV WNQAEKQLEN SLNEFGEKWE BACU015034/1-710 FLRTVYSIFG FSFKLNLSTR PEKFLGDIEV WNQAEKQLEN SLNEFGEKWE ENSBTAP00000018947/1-723 FLRTVYSIFG FSFKLNLSTR PEKFLGDIEV WNQAEKQLEN SLNDFGEKWE 601 650 bmy_19363T0/1-628 LNPGDGAFYG PKIDIQIKDA IGRYHQCATI QLDFQLPIRF NLTFVSHDGD ENSP00000387710/1-756 LNSGDGAFYG PKIDIQIKDA IGRYHQCATI QLDFQLPIRF NLTYVSHDGD ENSTTRP00000005696/1-709 LNPGDGAFYG PKIDIQIKDA IGRYHQCATI QLDFQLPIRF NLTFVSHDGD BACU015034/1-710 LNPGDGAFYG PKIDIQIKDA IGRYHQCATI QLDFQLPIRF NLTFVSHDGD ENSBTAP00000018947/1-723 LNPGDGAFYG PKIDIQIKDA IGRYHQCATI QLDFQLPIRF NLTFVSHDGD 651 700 bmy_19363T0/1-628 DKKRPVIVHR AILGSVERMI AILTENYGGK WPFWLSPRQV MVVPVGPTCD ENSP00000387710/1-756 DKKRPVIVHR AILGSVERMI AILTENYGGK WPFWLSPRQV MVVPVGPTCD ENSTTRP00000005696/1-709 DKKRPVIIHR AILGSVERMI AILTENYGGK WPFWLSPRQV MVVPVGPTCD BACU015034/1-710 DKKRPVIVHR AILGSVERMI AILTENYGGK WPFWLSPRQV MVVPVGPTCD ENSBTAP00000018947/1-723 DKKKPVIIHR AILGSVERMI AILTENYGGK WPFWLSPRQV MVVPVGPTCD 701 750 bmy_19363T0/1-628 EYAQKVRQQF HDAKFMVDID LDPGCTLNKK IRNAQLAQYN FILVVGEKEK ENSP00000387710/1-756 EYAQKVRQQF HDAKFMADID LDPGCTLNKK IRNAQLAQYN FILVVGEKEK ENSTTRP00000005696/1-709 EYAQKVRQQF HDAKFMVDID LDPGCTLNKK IRNAQLAQYN FILVVGEKEK BACU015034/1-710 EYAQKVRQQF HDAKFMVDID LDPGCTLNKK IRNAQLAQYN FILVVGEKEK ENSBTAP00000018947/1-723 EYAQKVRQQF HNAKFMVDID LDPGCTLNKK IRNAQLAQYN FILVVGEKEK 751 800 bmy_19363T0/1-628 TSSTVNIRTR DNKVHGERTI SETIEWLQQL KQSRSKQAEE EF ENSP00000387710/1-756 ISGTVNIRTR DNKVHGERTI SETIERLQQL KEFRSKQAEE EF ENSTTRP00000005696/1-709 TSSTVNIRTR DNKVHGERTI SETIEWLQQL KQSRSKQAEE EF BACU015034/1-710 TSSTVNIRTR DNKVHGEHTI SETIERLQRL KQSRSKQAEE EF ENSBTAP00000018947/1-723 TSGTVNIRTR DNKVHGERTI SETIERLQQL KHSRSKQAEE EF