KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:05 2014 Check: 00 .. Name: ENSTTRP00000006869/1-964 Len: 1224 Check: 7683 Weight: 1.00 Name: ENSP00000307666/1-964 Len: 1224 Check: 2015 Weight: 1.00 Name: ENSBTAP00000018952/1-964 Len: 1224 Check: 1847 Weight: 1.00 Name: bmy_06984T0/1-1218 Len: 1224 Check: 3633 Weight: 1.00 Name: BACU016849/1-709 Len: 1224 Check: 615 Weight: 1.00 // 1 50 ENSTTRP00000006869/1-964 ---------- ---------- ---------- ---------- ---------- ENSP00000307666/1-964 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018952/1-964 ---------- ---------- ---------- ---------- ---------- bmy_06984T0/1-1218 MPILRKNSPN LDSRHWTTWT TLFLRPSPVP PGECQVLRSP LWSRPVLGVA BACU016849/1-709 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006869/1-964 ---------- ---------- ---------- ---------- ---------- ENSP00000307666/1-964 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018952/1-964 ---------- ---------- ---------- ---------- ---------- bmy_06984T0/1-1218 IPSPFVPVAQ CLVTYELGFR LAGAATESKY LFIDRRPQCS LRARFVGLTE BACU016849/1-709 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000006869/1-964 ---------- ---------- ---------- ---------- ---------- ENSP00000307666/1-964 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018952/1-964 ---------- ---------- ---------- ---------- ---------- bmy_06984T0/1-1218 ASAAFLAGKC STWAVLSPPL QVPTAAGGLQ FPACSGKGRE TQLGSSTKVP BACU016849/1-709 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000006869/1-964 -----MQRIK SLMTRQ---- ---------- ---------- ---------- ENSP00000307666/1-964 -----MQKIK SLMTRQ---- ---------- ---------- ---------- ENSBTAP00000018952/1-964 -----MQKIK SLMTRQ---- ---------- ---------- ---------- bmy_06984T0/1-1218 PHEFDMQRIK SLMTRQLSSD SPNYPAGFPL SKLPIVCEGG LGILGVVVNL BACU016849/1-709 -----MQRIK SLMTRQ---- ---------- ---------- ---------- 201 250 ENSTTRP00000006869/1-964 ---------G LKSPPESLSD VGAIESLRVP GK-------- ---------- ENSP00000307666/1-964 ---------G LKSPQESLSD LGAIESLRVP GK-------- ---------- ENSBTAP00000018952/1-964 ---------G LKSPPESFSD LGAIESLRVP GK-------- ---------- bmy_06984T0/1-1218 NQIMKFYSHG LKSPPESLSD VGAIESLRVP GKSSNVMLTL CALALRNIMM BACU016849/1-709 ---------G LKSPPESLSD VGAIESLRVP GK-------- ---------- 251 300 ENSTTRP00000006869/1-964 ---------- ---------- -EEFRELREQ PSDPQAEQEL INSIEQVYFS ENSP00000307666/1-964 ---------- ---------- -EEFRELREQ PSDPQAEQEL INSIEQVYFS ENSBTAP00000018952/1-964 ---------- ---------- -EEFRELREQ PSDPQAEQEL INSIEQVYFS bmy_06984T0/1-1218 ENKEKPQFSR NVFITLVKRA LEEFRELREQ SSDPQAEQEL INSIEQVYFS BACU016849/1-709 ---------- ---------- -EEFRELREQ SSDPQAEQEL INSIEQVYFS 301 350 ENSTTRP00000006869/1-964 TDSFDIVKYE LEKLPPVLNL QDLEEYRDKL KQQQAAVSKK VADLILEKQP ENSP00000307666/1-964 VDSFDIVKYE LEKLPPVLNL QELEAYRDKL KQQQAAVSKK VADLILEKQP ENSBTAP00000018952/1-964 TDSFDIVKYE LEKLPPVLNL QELEEYRDKL KQQQAAVSKK VADLILEKQP bmy_06984T0/1-1218 TDSFDIVKYE LEKLPPVLNL QELEEYRDKL KQQQAAVSKK VADLILEKQP BACU016849/1-709 TDSFDIVKYE LEKLPPVLNL QELEEYRDKL KQQQAAVSKK VADLILEKQP 351 400 ENSTTRP00000006869/1-964 AYVKELERVT SLQTGLQLAA VICTNGRRHL NIAKEGFTQA SLGLLANQRK ENSP00000307666/1-964 AYVKELERVT SLQTGLQLAA VICTNGRRHL NIAKEGFTQA SLGLLANQRK ENSBTAP00000018952/1-964 AYVKELERVT SLQTGLQLAA VICTNGRRHL NIAKEGFTQA SLGLLANQRK bmy_06984T0/1-1218 AYVKELERVT SLQTGLQLAA VICTNGRRHL NIAKEGFTQA SLGLLANQRK BACU016849/1-709 AYVKELERVT SLQTGLQLAA VICTNGRRHL NIAKEGFTQA SLGLLANQRK 401 450 ENSTTRP00000006869/1-964 RQLLIGLLKS LRTIKTLXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000307666/1-964 RQLLIGLLKS LRTIKTLQRT DVRLSEMLEE EDYPGAIQLC LECQKAASTF ENSBTAP00000018952/1-964 RQLLIGLLKS LRTIKTLQRT DVRLSEMLEE EDYPGAIQLC LECQKAASTF bmy_06984T0/1-1218 RQLLIGLLKS LRTIKTLQRT DVRLSEMLEE EDYPGAIQLC LECQKAASTF BACU016849/1-709 RQLLIGLLKS LRTIKTLQRT DVRLSEMLEE EDYPGAIQLC LECQKAASTF 451 500 ENSTTRP00000006869/1-964 XXXXXXXELN SKLQDTLEQI EEQLDVALSK ICKNFDINHY TKVQQAYRLL ENSP00000307666/1-964 KHYSCISELN SKLQDTLEQI EEQLDVALSK ICKNFDINHY TKVQQAYRLL ENSBTAP00000018952/1-964 KHYSCISELN SKLQDTLEQI EEQLDVALSK ICKNFDVNHY TKVQQAYRLL bmy_06984T0/1-1218 KHYSCISELN SKLQDTLEQI EEQLDVALSK ICKNFDINHY TKVQQAYRLL BACU016849/1-709 KHYSCISELN SKLQDTLEQI EEQLDVALSK ICKNFDINHY TKVQQAYRLL 501 550 ENSTTRP00000006869/1-964 GKTQTAMDQL HMHFTQAIHN TVFQVVLGYV ELCAGNTDTK FQKLQYKDLC ENSP00000307666/1-964 GKTQTAMDQL HMHFTQAIHN TVFQVVLGYV ELCAGNTDTK FQKLQYKDLC ENSBTAP00000018952/1-964 GKTQTAMDQL HMHFTQAIHN TVFQVVLGYV ELCAGNTDTK FQKLQYKDLC bmy_06984T0/1-1218 GKTQTAMDQL HMHFTQAIHN TVFQVVLGYV ELCAGNTDTK FQKLQYKDLC BACU016849/1-709 GKTQTAMDQL HMHFTQAIHN TVFQVVLGYV ELCAGNTDTK FQKLQYKDLC 551 600 ENSTTRP00000006869/1-964 T--------- ---------- ----HVTPDS YIPCLADLCK ALWEVMLSYY ENSP00000307666/1-964 T--------- ---------- ----HVTPDS YIPCLADLCK ALWEVMLSYY ENSBTAP00000018952/1-964 T--------- ---------- ----HVTPDS YIPCLADLCK ALWEVMLSYY bmy_06984T0/1-1218 TVIEYKFSFF LTLCIIIGFH YMCVHVTPDS YIPCLADLCK ALWEVMLSYY BACU016849/1-709 T--------- ---------- ----HVTPDS YIPCLADLCK ALWEVMLSYY 601 650 ENSTTRP00000006869/1-964 RTMEWHEKHD SEDTTSASEG SNMMGTEETN FDRGYIKKKL EHGLTRIWQD ENSP00000307666/1-964 RTMEWHEKHD NEDTASASEG SNMIGTEETN FDRGYIKKKL EHGLTRIWQD ENSBTAP00000018952/1-964 RTMEWHEKHD NEDTTSASEG SNMMGAEETS FDRGYIKKKL EHGLTRIWQD bmy_06984T0/1-1218 RTMEWHEKHD SEDTTSASEG SNMMGTEETN FDRGYIKKKL EHGLTRIWQD BACU016849/1-709 RTMEWHEKHD SEDTTSASEG SNMMGTEETN FDRGYIKKKL EHGLTRIWQD 651 700 ENSTTRP00000006869/1-964 VQLKVKTYLL GTDLSIFKYD DFIFVLDIIS RLMQVGEEFC GSKSEVLQES ENSP00000307666/1-964 VQLKVKTYLL GTDLSIFKYD DFIFVLDIIS RLMQVGEEFC GSKSEVLQES ENSBTAP00000018952/1-964 VQLKVKTYLL GTDLSIFKYD DFIFVLDIIS RLMQVGEEFC GSKSEVLQES bmy_06984T0/1-1218 VQLKVKTYLL GTDLSIFKYD DFIFVLDIIS RLMQVGEEFC GSKSEVLQES BACU016849/1-709 VQLKVKTYLL GTDLSIFKYD DFIFVLDIIS RLMQVGEEFC GSKSEVLQES 701 750 ENSTTRP00000006869/1-964 IRKQSVNYFK NYHRTRLDEL RMFLENETWE LCPVKSNFSI LQLHEFKFME ENSP00000307666/1-964 IRKQSVNYFK NYHRTRLDEL RMFLENETWE LCPVKSNFSI LQLHEFKFME ENSBTAP00000018952/1-964 IRKQSVNYFK NYHRTRLDEL RMFLENETWE LCPVKSNFSI LQLHEFKFME bmy_06984T0/1-1218 IRKQSVNYFK NYHRTRLDEL RMFLENETWE LCPVKSNFSI LQLHEFKFME BACU016849/1-709 IRKQSVNYFK NYHRTRLDEL RMFLENETWE LCPVKSNFSI LQLHEFKFME 751 800 ENSTTRP00000006869/1-964 QSRSPSVSPN KQPSSTSSKM VTLFEQYCSG GNPFEIQADH KDEETEDVLA ENSP00000307666/1-964 QSRSPSVSPS KQPVSTSSKT VTLFEQYCSG GNPFEIQANH KDEETEDVLA ENSBTAP00000018952/1-964 QSRSPSVSPS KQSSATSSKT VTLFEQYCSG GNPFEIQADH KDEETEDVLA bmy_06984T0/1-1218 QSRSPSVSPS KQPSSTSSKM VTLFEQYCSG GNPFEIQADH KDEETEDVLA BACU016849/1-709 QSRSPSVSPS KQPSSASSKM VTLFEQYCSG GNPFEIQADH KDEETEDVLA 801 850 ENSTTRP00000006869/1-964 SNGYESDEQE KSAYQEYDSD SDVPEELKQD YVDEQTGDAP VKSVSRETLK ENSP00000307666/1-964 SNGYESDEQE KSAYQEYDSD SDVPEELKRD YVDEQTGDGP VKSVSRETLK ENSBTAP00000018952/1-964 SNGYESDEQE KSAYQEYDSD SDVPEELKRD FVDEQTGDAP VKSVSRETLK bmy_06984T0/1-1218 SNGYESDEQE KSAYQEYDSD SDVPEELKQD YVDEQTGDAP VKSVSRETLK BACU016849/1-709 SNGYESDEQE KGAYQEYDSD SDVPEELKQD YVDEQTGDAP VKSVSRETLK 851 900 ENSTTRP00000006869/1-964 SRKKSDYSLN KVNAPILTNT TLNVIRLVGK YMQMMNILKP IAFDVIHFMS ENSP00000307666/1-964 SRKKSDYSLN KVNAPILTNT TLNVIRLVGK YMQMMNILKP IAFDVIHFMS ENSBTAP00000018952/1-964 SRKKSDYSLN KVNAPILTNT TLNVIRLVGK YMQMMNILKP IAFDVIHFMS bmy_06984T0/1-1218 SRKKSDYSLN KVNAPILTNT TLNVIRLVGK YMQMMNILKP IAFDVIHFMS BACU016849/1-709 SRKKSDYSLN KVNAPILTNT TLNVIRLVGK YMQMMNILKP IAFDVIHFMS 901 950 ENSTTRP00000006869/1-964 QLFDYYLYAI YTFFGRNDSL ESTGLGLSSS RLRTTLNRIQ ESLIDLEVSA ENSP00000307666/1-964 QLFDYYLYAI YTFFGRNDSL ESTGLGLSSS RLRTTLNRIQ ESLIDLEVSA ENSBTAP00000018952/1-964 QLFDYYLYAI YTFFGRNDSL ESTGLGLSSS RLRTTLNRIQ ESLIDLEVSA bmy_06984T0/1-1218 QLFDYYLYAI YTFFGRNDSL ESTGLGLSSS RLRTTLNRIQ ESLIDLEVSA BACU016849/1-709 QLFDYYLYAI YTFFGRNDSL ESTGLGLSSS RLRTTLNRIQ ESLIDLEVSA 951 1000 ENSTTRP00000006869/1-964 DPTATLTAAE ERKEKVPSPH LSHLVVLTFG DTLYGLAERV VATESLVFLA ENSP00000307666/1-964 DPTATLTAAE ERKEKVPSPH LSHLVVLTSG DTLYGLAERV VATESLVFLA ENSBTAP00000018952/1-964 DSAATLTAAE ERKEKVPSPH LSHLVVLTSG DTLYGLAERV VATESLVFLA bmy_06984T0/1-1218 DPTATLTAAE ERKEKVPSPH LSHLVVLTFG DTLYGLAERV VATESLVFLA BACU016849/1-709 DPTATLTAAE ERKEK----- ---------- ----GI---- ---------- 1001 1050 ENSTTRP00000006869/1-964 EQFEFLQPHL DAVMPAVKKP FLQQFYSQTV STASELRKPI YWIVAGKAID ENSP00000307666/1-964 EQFEFLQPHL DAVMPAVKKP FLQQFYSQTV STASELRKPI YWIVAGKALD ENSBTAP00000018952/1-964 EQFEFLQPHL DAVMPAVKKP FLQQFYSQTV STASELRKPI YWIVAGKAID bmy_06984T0/1-1218 EQFEFLQPHL DAVMPAVKKP FLQQFYSQTV STASELRKPI YWIVAGKAID BACU016849/1-709 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000006869/1-964 YEQMLLLMAN VKWDVKEIMS QHNIYVDALL KEFEQFNTRL NEVSKRVRIP ENSP00000307666/1-964 YEQMLLLMAN VKWDVKEIMS QHNIYVDALL KEFEQFNRRL NEVSKRVRIP ENSBTAP00000018952/1-964 YEQMLLLMAN VKWDVKEIMS QHNIYVDTLL KEFEQFNMRL NEVSKRVRIP bmy_06984T0/1-1218 YEQMLLLMAN VKWDVKEIMS QHNIY----- -EFEQFNTRL NEVSKRVRIP BACU016849/1-709 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000006869/1-964 LPVSNILWEH CIRLANRTIV EGXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000307666/1-964 LPVSNILWEH CIRLANRTIV EGYANVKKCS NEGRALMQLD FQQFLMKLEK ENSBTAP00000018952/1-964 LPVSNILWEH CIRLANRTIV EGYANVKKCS NEGRALMQLD FQQFLMKLEK bmy_06984T0/1-1218 LAVSNILWEH CIRLANRTIV EGYANVKKCS NEGRALMQLD FQQFLMKLEK BACU016849/1-709 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000006869/1-964 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXEYSTK QLTNLVNVCL ENSP00000307666/1-964 LTDIRPIPDK EFVETYIKAY YLTENDMERW IKEHREYSTK QLTNLVNVCL ENSBTAP00000018952/1-964 LTDIRPIPDK EFVETYIKAY YLTENDMERW IKEHREYSTK QLTNLVNVCL bmy_06984T0/1-1218 LTDIRPIPDK EFVETYIKAY YLTENDMERW IKEHREYSSK QLTNLVNVCL BACU016849/1-709 ---------- ---------- ---------- ---------- ---------L 1201 1250 ENSTTRP00000006869/1-964 GSHINKKARQ KLLSAIDDID RPKR ENSP00000307666/1-964 GSHINKKARQ KLLAAIDDID RPKR ENSBTAP00000018952/1-964 GSHINKKARQ KLLSAIDDID RPKR bmy_06984T0/1-1218 GSHINKKARQ KLLSAIDDID RPKR BACU016849/1-709 G--------- ---------- ----