KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:06 2014 Check: 00 .. Name: ENSTTRP00000016443/1-1029 Len: 1142 Check: 3866 Weight: 1.00 Name: ENSP00000354476/1-1141 Len: 1142 Check: 3914 Weight: 1.00 Name: ENSBTAP00000018956/1-1111 Len: 1142 Check: 8208 Weight: 1.00 Name: bmy_01016T0/1-882 Len: 1142 Check: 4830 Weight: 1.00 Name: BACU013419/1-1119 Len: 1142 Check: 1839 Weight: 1.00 // 1 50 ENSTTRP00000016443/1-1029 ---------- ---------- ---------- MLQFVSNQVG EFPDLFSEQL ENSP00000354476/1-1141 MDDSGELGGL ETMETLTELG DELTLGDIDE MLQFVSNQVG EFPDLFSEQL ENSBTAP00000018956/1-1111 ---------- ---------- ---------E MLQFVSNQVG EFPDLFSEPL bmy_01016T0/1-882 ---------- ---------- ---------- MLQFVSNQVG EFPDLFSEQL BACU013419/1-1119 ---------- -------VGS KITLFHLLTE MLQFVSNQVG EFPDLFSEQL 51 100 ENSTTRP00000016443/1-1029 CSSFPG-GG- --GSGNSGSS NGSSSG---G SGAGDPSVQR SFSQVPLPSF ENSP00000354476/1-1141 CSSFPGSGGS GSSSGSSGSS SSSSNGRGSS SGAVDPSVQR SFTQVTLPSF ENSBTAP00000018956/1-1111 CGSFPG-GGG GSGSGSGGGG GGGSNGGGAG AGSGDPSGQR PFSQVPLPAF bmy_01016T0/1-882 CSSFPG-GG- --GSGNSGSS NGGSSGG--G AGAGDPSLQR SFSQVPLPSF BACU013419/1-1119 CSSFPG-GG- --GSGNSGSS NGGSSSG--G AGAGDPSVQR SFSQVPLPSF 101 150 ENSTTRP00000016443/1-1029 SPSATSPQAP ALQVK-APPT AVPPPPRATP VLQPRPQPQP QPPAQLQQQT ENSP00000354476/1-1141 SPSAASPQAP TLQVK-VSPT SVPTTPRATP ILQPRPQPQP QPQTQLQQQT ENSBTAP00000018956/1-1111 SPSATSSQAA TLQVK-APAA SGPTPPRAAP VLQPRPQPQP PPPAPLPQQT bmy_01016T0/1-882 SPSATSPQAP ALQVK-APPT AVPPPPRATP VLQPRPQPQP QPPAQLQQQT BACU013419/1-1119 SPSATSPQAP ALQVKAAPPT AVPPLPRATP ILQPRPQPQP QPPAQLQQQT 151 200 ENSTTRP00000016443/1-1029 VMITPTFSTA PQTRIIQQPL IYQNAATSFQ XXXXXXXXXX XXXXXXXXXX ENSP00000354476/1-1141 VMITPTFSTT PQTRIIQQPL IYQNAATSFQ VLQPQVQSLV TSSQVQPVTI ENSBTAP00000018956/1-1111 VMITPTFSTA PQTRIIQQPV IYQNAATSFQ VLQPQVQSLV TSSQVQPVAI bmy_01016T0/1-882 VMITPTFSTA PQTRIIQQPL IYQNAATSFQ VLQPQVQSLV ASSQVQPVTI BACU013419/1-1119 VMITPTFSTA PQTRIIQQPL IYQNAATSFQ VLQPQVQSLV TSSQVQPVTI 201 250 ENSTTRP00000016443/1-1029 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XVLVQPQIIK ENSP00000354476/1-1141 QQQVQTVQAQ RVLTQTANGT LQTLAPATVQ TVAAPQVQQV PVLVQPQIIK ENSBTAP00000018956/1-1111 QQQVQTVQAP RVLTQTASGT LQTLAPATVQ TVAAPQVQQV PVLVQPQIIK bmy_01016T0/1-882 QQQVQTVQAQ RVLTQTANGT LQTLAPATVQ AVAAPQVQQV PVLVQPQIIK BACU013419/1-1119 QQQVQTVQAQ RVLTQTANGT LQTLAPATVQ TVAAPQVQQV PVLVQPQIIK 251 300 ENSTTRP00000016443/1-1029 TDSLVLTTLK TDGSPVMAAV QNPALTALTT PIQTAALQVP TLVGSNGTIL ENSP00000354476/1-1141 TDSLVLTTLK TDGSPVMAAV QNPALTALTT PIQTAALQVP TLVGSSGTIL ENSBTAP00000018956/1-1111 TDSLVLTTLK TDGSPVMAAV QNPALTALTT PIQTAALQVP TLVGSNGTIL bmy_01016T0/1-882 TDSLVLTTLK TDGSPVMAAV QNPALTALTT PIQTAALQVP TLVGSNGTIL BACU013419/1-1119 TDSLVLTTLK TDGSPVMAAV QNPALTALTT PIQTAALQVP TLVGSNGTIL 301 350 ENSTTRP00000016443/1-1029 TTMPVMMGQE KVPIKQVPGG VKQLEPPKEG ERRTTHNIIE KRYRSSINDK ENSP00000354476/1-1141 TTMPVMMGQE KVPIKQVPGG VKQLEPPKEG ERRTTHNIIE KRYRSSINDK ENSBTAP00000018956/1-1111 TTMPVMMGQE KVPIKQVPGG VKQLEPPKEG ERRTTHNIIE KRYRSSINDK bmy_01016T0/1-882 TTMPVMMGQE KVPIKQVPGG VKQLEPPKEG ERRTTHNIIE KRYRSSINDK BACU013419/1-1119 TTMPVMMGQE KVPIKQVPGG VKQLEPPKEG ERRTTHNIIE KRYRSSINDK 351 400 ENSTTRP00000016443/1-1029 IIELKDLVMG TDAKMHKSGV LRKAIDYIKY LQQVNHKLRQ ENMVLKLANQ ENSP00000354476/1-1141 IIELKDLVMG TDAKMHKSGV LRKAIDYIKY LQQVNHKLRQ ENMVLKLANQ ENSBTAP00000018956/1-1111 IIELKDLVMG TDAKMHKSGV LRKAIDYIKY LQQVNHKLRQ ENMVLKLANQ bmy_01016T0/1-882 IIELKDLVMG TDAKMHKSGV LRKAIDYIKY LQQVNHKLRQ ENMVLKLANQ BACU013419/1-1119 IIELKDLVMG TDAKMHKSGV LRKAIDYIKY LQQVNHKLRQ ENMVLKLANQ 401 450 ENSTTRP00000016443/1-1029 KNKLLKGIDL -SLMDNDVDL KIDDFNQNVL LMSLRASDS- SQAGFSPYSI ENSP00000354476/1-1141 KNKLLKGIDL GSLVDNEVDL KIEDFNQNVL LMSPPASDSG SQAGFSPYSI ENSBTAP00000018956/1-1111 KSKLLKGIDL GSLVDNDVDL KIDDFNQNVL LMSPPASDSG SQAGFSPYSI bmy_01016T0/1-882 KNKLLKGIDL GSLVDNDVDL KIDDFNQNVL LMSPPASDSG SQAGFSPYSI BACU013419/1-1119 KNKLLKGIDL GSLVDNDVDL KIDDFNQNVL LMSPPASDSG SQAGFSPYSI 451 500 ENSTTRP00000016443/1-1029 DSEPGSPLLD DAXVKDEPDS PPVALGMVDR SRILLCVLTF LCLSFNPLTA ENSP00000354476/1-1141 DSEPGSPLLD DAKVKDEPDS PPVALGMVDR SRILLCVLTF LCLSFNPLTS ENSBTAP00000018956/1-1111 DSEPGSPLLD DAKVKDEPDS PPVALGMVDR SRILLCVLTF LCLSFNPLTT bmy_01016T0/1-882 DSEPGSPLLD DAKVKDEPDS PPVALGMVDR SRILLCVLTF LCLSFNPLTA BACU013419/1-1119 DSEPGSPLLD DAKVKDEPDS PPVALGMVDR SRILLCVLTF LCLSFNPLTA 501 550 ENSTTRP00000016443/1-1029 LLQWGGAHDS DQRPHSGSGR SMLSLESGSA GWFDWMMPTL LLWLVNGVIV ENSP00000354476/1-1141 LLQWGGAHDS DQHPHSGSGR SVLSFESGSG GWFDWMMPTL LLWLVNGVIV ENSBTAP00000018956/1-1111 LLQWGGAHDA DQHPHSGPGR SMLSLESGSR GWLDWMMPTL LLWLVNGMIV bmy_01016T0/1-882 LLQWGGAHDS DQHPHSGSGR SMLSLESGSG GWLGWMMPTL LLWLVNGVIV BACU013419/1-1119 LLQWGGAHDS DQHPHSGSGR SMLSLESGSG GWLGWMMPTL LLWLVNGVIV 551 600 ENSTTRP00000016443/1-1029 LSVFVKLLVH GEPVIRPHSR SSVTFWRHRK QADLDLARGD FAAAAANLQT ENSP00000354476/1-1141 LSVFVKLLVH GEPVIRPHSR SSVTFWRHRK QADLDLARGD FAAAAGNLQT ENSBTAP00000018956/1-1111 LSVFVKLLVH GEPVIRPHSR SSVTFWRHRK QADLDLARGD FAAAAANLQT bmy_01016T0/1-882 LSVFVKLLVH GEPVVRPHSR SSVTFWRHRK QADLDLARGD FAAAAANLQT BACU013419/1-1119 LSVFVKLLVH GEPVVRPHSR SSVTFWRHRK QADLDLARGD FAAAAANLQT 601 650 ENSTTRP00000016443/1-1029 CLSVLGRALP TSRLDLACSL SWNVIRYSLQ KLRLVRWLLK KVFQHRRATL ENSP00000354476/1-1141 CLAVLGRALP TSRLDLACSL SWNVIRYSLQ KLRLVRWLLK KVFQCRRATP ENSBTAP00000018956/1-1111 CLSVLGRALP TSRLDLACSL SWNVIRYSLQ KLRLVRWLLK KVFQHRRAAP bmy_01016T0/1-882 CLSVLGRALP TSRLDLACSL SWNVIRYSLQ KLRLVRWLLK KVFQRRRATL BACU013419/1-1119 CLSVLGRALP TSRLDLACSL SWNVIRYSLQ KLRLVRWLLK KVFQHRRATL 651 700 ENSTTRP00000016443/1-1029 ATAAGFEEEA KTSARDAALA YHRLHQLHIT GKLPVGSACS DVHMALCAVN ENSP00000354476/1-1141 ATEAGFEDEA KTSARDAALA YHRLHQLHIT GKLPAGSACS DVHMALCAVN ENSBTAP00000018956/1-1111 ATAAGFEEEA KTSARDAALA YHRLHQLHIT GKLPVGSACS DVHMALCAVN bmy_01016T0/1-882 AAAAGFEEEA KTSARDAALA YHRLHQLHIT GKLPVGSACS DVHMALCAVN BACU013419/1-1119 ATAAGFEEEA KTSARDAALA YHRLHQLHIT GKLPVGSACS DVHMALCAVN 701 750 ENSTTRP00000016443/1-1029 LAECAEEKIP PSTLVEIHLT AAMGLKTQCG GKLGFLASYF LSRAQSLCGP ENSP00000354476/1-1141 LAECAEEKIP PSTLVEIHLT AAMGLKTRCG GKLGFLASYF LSRAQSLCGP ENSBTAP00000018956/1-1111 LAECAEEKIP PSTLVEIHLT AAMGLKTRCG GKLGFLASYF LSRAQSLCGP bmy_01016T0/1-882 LAECAEEKIP PSTLVEIHLT AAMGLKTRCG GKLGFLASYF LSRAQSLCGP BACU013419/1-1119 LAECAEEKIP PSTLVEIHLT AAMGLKTRCG GKLGFLASYF LSRAQSLCGP 751 800 ENSTTRP00000016443/1-1029 ERSAVPDSLR WLCHPLGQKF FMERSWSVKS AAKESLYCAQ RNPADPIAQV ENSP00000354476/1-1141 EHSAVPDSLR WLCHPLGQKF FMERSWSVKS AAKESLYCAQ RNPADPIAQV ENSBTAP00000018956/1-1111 ERSAVPDSLR WLCHPLGQKF FMERSWSVKS AAKESLYCAQ RNPADPIAQV bmy_01016T0/1-882 ERSAVPDSLR WLCHPLGQKF FMERSWSVKS AAKESLYCAQ RNPADPIAQV BACU013419/1-1119 ERSAVPDSLR WLCHPLGQKF FMERSWSVKS AAKESLYCAQ RSPADPIAQV 801 850 ENSTTRP00000016443/1-1029 HQAFCRNLLE RAVESLVKPQ AKKKAADQEE ESSEFSSALE YLKLLNSFVD ENSP00000354476/1-1141 HQAFCKNLLE RAIESLVKPQ AKKKAGDQEE ESCEFSSALE YLKLLHSFVD ENSBTAP00000018956/1-1111 HQAFCKNLLE RAVESLVKPQ AKKKAADQEE ESCEFSSALE YLKLLNSFVD bmy_01016T0/1-882 HQAFCRNLLE RAVESLVKPQ AKKKAADQEE ESSEFSSALE YLKLLNSFVD BACU013419/1-1119 HQAFCRNLLE RAVESLVKPQ AKKKAADQEE ESSEFSSALE YLKLLNSFVD 851 900 ENSTTRP00000016443/1-1029 SVGIVTAPFS SSCVLKSALG PDVVCRWWTS AITMAISWLQ GDDAAVRAHF ENSP00000354476/1-1141 SVGVMSPPLS RSSVLKSALG PDIICRWWTS AITVAISWLQ GDDAAVRSHF ENSBTAP00000018956/1-1111 SVGIVTPPFS SSSVLKSALG PDVICRWWTS AIAMAISWLQ GDDAAVRTHF bmy_01016T0/1-882 SVGIVTAPFS SSCVLKSALG PDVVCRWWTS AITMAISWLQ GDDAAVRAHC BACU013419/1-1119 SVGIVTAPFS SSCVLKSALG PDVVCRWWTS AITMAISWLQ GDDAAVRAHC 901 950 ENSTTRP00000016443/1-1029 TEVERVPKAL EVTESPLVKA VFHTCRAMHA SLSGKADGQQ SSFCHCERAS ENSP00000354476/1-1141 TKVERIPKAL EVTESPLVKA IFHACRAMHA SLPGKADGQQ SSFCHCERAS ENSBTAP00000018956/1-1111 TEVERVPQAL EVTESPLVKA VFHTCRAMHA SLSGKADGQQ SSFCHCERAS bmy_01016T0/1-882 TEVERVPKAL EVTE------ ---------- ---------- ---------- BACU013419/1-1119 TEVERVPKAL EVTESPLVKA VFHTCRAMHA SLSGKADGQQ SSFCHCERAS 951 1000 ENSTTRP00000016443/1-1029 GHLWSSLNVS GAACDPALSH VVQLLTCDLL LSLRTALWQK QAGASQALGE ENSP00000354476/1-1141 GHLWSSLNVS GATSDPALNH VVQLLTCDLL LSLRTALWQK QASASQAVGE ENSBTAP00000018956/1-1111 GHLWSSLNVS GATCDPNLNH VVQLLTCDLL LSLRTALWQK QAGASQALGE bmy_01016T0/1-882 ---------- ---------- ---------- -------WQH LV-------- BACU013419/1-1119 GHLWSSLNVS GAACDPALSN VVQLLTCDLL LSLRTALWQK QAGASQALGE 1001 1050 ENSTTRP00000016443/1-1029 TYHASGAELA GFQRDLGSLR RLAHSFRPAY RKVFLHEATV RLMAGASPTR ENSP00000354476/1-1141 TYHASGAELA GFQRDLGSLR RLAHSFRPAY RKVFLHEATV RLMAGASPTR ENSBTAP00000018956/1-1111 TYHASGAELA GFQRDLGSLR RLAHSFRLAY RKVFLHEATV RLMAGASPTR bmy_01016T0/1-882 ---------- ---------- ---------- ---------- ---------- BACU013419/1-1119 TCHASGAELA GFQRDLGSLR RLAHSFRPAY RKVFLHEATV RLMAGASPTR 1051 1100 ENSTTRP00000016443/1-1029 THQLLEHSLR RRTAQNAKH- ---------- ---------- ---------- ENSP00000354476/1-1141 THQLLEHSLR RRTTQSTKHG EVDAWPGQRE RATAILLACR HLPLSFLSSP ENSBTAP00000018956/1-1111 THQLLEHSLR RRTAQNAKHG EADAWPGQRE RATAILLACR HLPLSFLSSP bmy_01016T0/1-882 ---------- ---------- ---------- ---------- ---------- BACU013419/1-1119 THQLLEHSLR RRNTQNTKHG EADAWPGQRE RATAILLACR HLPLSFLSSP 1101 1150 ENSTTRP00000016443/1-1029 ---------- ---------- ---------- ---------- -- ENSP00000354476/1-1141 GQRAVLLAEA ARTLEKVGDR RSCNDCQQMI VKLGGGTAIA AS ENSBTAP00000018956/1-1111 GQRAVLLAEA ARTLEKAGDR RSCSDCQQMI VKLGGGTAIA AS bmy_01016T0/1-882 ---------- ---------- ---------- ---------- -- BACU013419/1-1119 GQRAVLLAEA ARTLEKVGDR RSCSDCQQMI VKLGGGTAIA AS