KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:07 2014 Check: 00 .. Name: ENSP00000268616/1-949 Len: 955 Check: 8365 Weight: 1.00 Name: ENSBTAP00000018957/1-947 Len: 955 Check: 758 Weight: 1.00 Name: ENSTTRP00000008387/1-944 Len: 955 Check: 4236 Weight: 1.00 Name: bmy_06756T0/1-858 Len: 955 Check: 2035 Weight: 1.00 Name: BACU004309/1-792 Len: 955 Check: 6897 Weight: 1.00 // 1 50 ENSP00000268616/1-949 MASNHPAFSF HQKQVLRQEL TQIQSSLNGG GGHGGKGAPG PGGALPTCPA ENSBTAP00000018957/1-947 MASNHPAFSF HQKQVLRQEL TQIQSSLSGG GG----G-PG GKSALPTCPA ENSTTRP00000008387/1-944 MASNHPAFSF HQKQVLRQEL TQIQSSLSGG GGGGGGG-PG GKSALPTCPA bmy_06756T0/1-858 ---------- ---------- ---------- ---------- MPVALSTCGV BACU004309/1-792 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000268616/1-949 CHKITPRTEA PVSSVSNSLE NALHTSAHST EESLPKRPLG KHSKVSVEKI ENSBTAP00000018957/1-947 CHKVTPRTEP PVSSVGNSLE NALHTSTHST EGSLPKRPGG KLSRVTVEKI ENSTTRP00000008387/1-944 CHKVTPRTET PVSSVGNSLE NALHTSAHST EESLPKRPGG KHSRXXXXXX bmy_06756T0/1-858 ---------- ---------- ---------- ---------- ----LTVWTS BACU004309/1-792 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000268616/1-949 DLKGLSHTKN DRNVECSFEV LWSDSSITSV TKSSSEVTEF ISKLCQLYPE ENSBTAP00000018957/1-947 DLKGLSHKKN ERNVECSFEV LWSDSSITSV TKSSSEVTEF ISKLSQLYPE ENSTTRP00000008387/1-944 XXXXXXXXXX XXXXXXXXXV LWSDSSVTSV TKSSSEVTEF -SKLSQLCPE bmy_06756T0/1-858 SFLGISRFRV HGCV------ LWSDSSITSV TKSSSEVTEF ISKLSQLYPE BACU004309/1-792 ---------- ---------- ---------- ---------F VFQLSQLYPE 151 200 ENSP00000268616/1-949 ENLEKLIPCL AGPDAFYVER NHVDLDSGLR YLASLPSHVL KNDHVRRFLS ENSBTAP00000018957/1-947 ENLEKFIPCL AGPDSFYVER NHMDLEADLR YLASLPSHVL KNDHVKKFFS ENSTTRP00000008387/1-944 ENLEKFIPCL AGPDAFYVER NHMDLE-GLR YLASLPSHIL KNDHVKKFFS bmy_06756T0/1-858 ENLEKFIPCI AGPDSFYVER NHVDVEADLR YLASLPSHIL KNDHVKKFFS BACU004309/1-792 ENLEKFIPCL AGPDSFYVER NHMDLEADLR YLASLPSHIL KNDHVKKFFS 201 250 ENSP00000268616/1-949 TSSPPQQLQS PSPGNPSLSK VGTVMGVSGR PVCGVAGIPS SQSGAQHHGQ ENSBTAP00000018957/1-947 TSSPTQQLQS PSPGNPSLSK VGTMMGVSGR PVCGVAGIPS SQGSAQHHVQ ENSTTRP00000008387/1-944 TSSPTQQLQS PGPGNPSLSK VGTMMGVSGR PVCGVAGIPS SQGGAQHHVQ bmy_06756T0/1-858 TSSPTQQLQS PSPGNPSLSK VGTMMGVSGR PVCGVAGIPS SQGGAQHHVQ BACU004309/1-792 TSSPTQQLQS PSPGNPSLSK VGTMMGVSGR PVCGVAGIPS SQGGAQHHVQ 251 300 ENSP00000268616/1-949 HPAGSAAPLP HCSHAGSAGS ALAYRTQMDT SPAILMPSSL QTPQTQEQNG ENSBTAP00000018957/1-947 HSA-SAAALP HCSHSGGAGS ALAYRTPMDS SPAILMPSSL QAPQTQEQNG ENSTTRP00000008387/1-944 HSA-STSALP HCSHAGGAGS ALAYRTPMDS SPAILMPSSL QAPQTQEQNG bmy_06756T0/1-858 HSA-SASALP HCSHAGGAGS ALAYRTPMDS SPAILMPSSL QAPQTQEQNG BACU004309/1-792 HSA-SASALP HCSHAGGAGS ALAYRTPMDS SPTILMPSSL QAPQTQEQNG 301 350 ENSP00000268616/1-949 ILDWLRKLRL HKYYPVFKQL SME-KFLSLT EEDLNKFESL TMGAKKKLKT ENSBTAP00000018957/1-947 ILDWLRKLRL HKYYPVFKQL TMEKKFLSLT EEDLNKFESL TMGAKKKLKT ENSTTRP00000008387/1-944 ILDWLRKLRL HKYYPVFKQL TME-KFLSLT EEDLNKFESL TMGAKKKLKT bmy_06756T0/1-858 ILDWLRKLRL HKYYPVFKQL TME-KFLSLT EEDLNKFESL TMGAKKKLKT BACU004309/1-792 ILDWLRKLRL HKYYPVFKQL TME-KFLSLT EEDLNKFESL TMGAKKKLKT 351 400 ENSP00000268616/1-949 QLELEKEKSE RRCLNPSAPP LVTSSGVARV PPTSHVGPVQ SGRGSHAAEL ENSBTAP00000018957/1-947 QLELEKEKSE KRCLNPSAPP PVSSSGVARV PPTSHVGPVQ TVRGSHAAAL ENSTTRP00000008387/1-944 QLELEKEKSE KRCLNPSAPP PVSSSGVARV PPTSHVGPVQ PVRSSHAAAL bmy_06756T0/1-858 QLELEKEKSE KRCLNPSAPP PVSSSGVARV PPTSHVGPVQ PVRSSHAAAL BACU004309/1-792 QLELEKEKSE KRCLNPSAPP PVSSSGVARV PPTSHVGPVQ PVRSSHAAAL 401 450 ENSP00000268616/1-949 RVEVEQPHHQ LPREGSSSEY SSSSSSPMGV QAREESSDSA EENDRRVEIH ENSBTAP00000018957/1-947 RVEVEQAPHQ TAREGSSSEC SSSSPSPMGV QAREESSDSA EENDRRVEIH ENSTTRP00000008387/1-944 RVEVAQPPHQ TAREGSSSEC SSSSPSPMGV QAREESSDSA EENDRRVEIH bmy_06756T0/1-858 RVEVEQPPHQ TAREGSSSEC SSSSPSPMGV QAREESSDSA EESDRRVEIH BACU004309/1-792 RVEVEQPPHQ TAREGSSSEC SSSSPSPMGV QAREESSDSA EESDRRVEIH 451 500 ENSP00000268616/1-949 LESSDKEKPV MLLNHFTSSS ARPTAQVLPV QNEASSNPSG HHPLPPQMLS ENSBTAP00000018957/1-947 LEGPDKEKPV MLLNHFTSSS ARPTAQVLPV QNEAGSTPSG HHSLPPQMMT ENSTTRP00000008387/1-944 LEGSDKEKPV MLLNHFTSSS ARPTAQVLPV QNEAGSNPSG HHPLPPQMMT bmy_06756T0/1-858 LEGSDKEKPV MLLNHFTSSS ARPTAQVLPV QNEAGSNPSG HHPLPPQMMT BACU004309/1-792 LEGSDKEKP- ---------- ------VLPV QNEAGSNPSG HHPLPPQMMT 501 550 ENSP00000268616/1-949 AASHITPIRM LNSVHKPERG SADMKLLSSS VHSLLSLEER NKGSGPRSSM ENSBTAP00000018957/1-947 AASHIAPIRM LNSVHKAERG STDMKLLSSS VHSLLSLEER SKVSGPRSSI ENSTTRP00000008387/1-944 AASHIAPIRM LNSVHKAERG GADMKLLSSS VHSLLSLEER SKVSGPRSGI bmy_06756T0/1-858 AASHIAPIRM LNSVHKAERG AADMKLLSSS VHSLLSLEER SKVSGPRSGI BACU004309/1-792 AASHIAPIRM LNSVHKAERG AADMKLLSSS VHSLLSLEER SKVSGPRSGI 551 600 ENSP00000268616/1-949 KVDKSFGSAM MDVLPASAPH QPVQVLSGLS ESSSMSPTVS FGPRTKVVHA ENSBTAP00000018957/1-947 KVDKSFGNTM MDVLPSSTPH QPMQVLSGLA ESSSVSPTVS FGPRTKVVHA ENSTTRP00000008387/1-944 KVDKNFGSTM MDMLPASTPH QPMQVLSGLT ESSSVSPTVS FGPRTKVVHA bmy_06756T0/1-858 KVDKSFGSTM MDVLPASTPH QPVQVLSGLT ESSSVSPTVS FGPRTKVVHA BACU004309/1-792 KVDKSFGSTM MDVLPASTPH QPVQVLSGLT ESSSVSPTVS FGPRTKVVHA 601 650 ENSP00000268616/1-949 STLDRVLKTA QQPALVVETS TAATGTPSTV LHAARPPIKL LLSSSVPADS ENSBTAP00000018957/1-947 SALDRVMKPA QQPALVVEAS TAAAGTSSTV FHVARPPIKL LVSSSVPADS ENSTTRP00000008387/1-944 SALDRVMKPA QQPALVVETS TAAAGTSSTV FHVARPPIKL LVSSSVPADS bmy_06756T0/1-858 SALDRVMKPA QQPALVVETS TAAAGTSSTV FHVARPPIKL LVSSSVPADS BACU004309/1-792 SALDRVMKPA QQPALVVETS TAAAGTSSTV FHVARPPIKL LVSSSVPADS 651 700 ENSP00000268616/1-949 AISGQTSCPN NVQISVPPAI INPRTALYTA NTKVAFSAMS SMPVGPLQGG ENSBTAP00000018957/1-947 AISGQTSCSN NVQISVPPAI INPRTALYTA NTKAAFSAMS SVPVGPLQGS ENSTTRP00000008387/1-944 AVSGQTSCSG NVQISVPPAI INPRTALYTA NTKAAFSAMS SVPVGPLQGS bmy_06756T0/1-858 AISGQTSCSG NVQISVPPAI INPRTALYTA NTKAAFSAMS SVPVGPLQGS BACU004309/1-792 AISGQTSCSG NVQISVPPAI INPRTALYTA NTKAAFSAMS SVPVGPLQGS 701 750 ENSP00000268616/1-949 FCANSNTASP SSHPSTSFAN MATLPSCPAP SSSPALSSVP ESSFYSSSGG ENSBTAP00000018957/1-947 FCANSNTAAS SSHPSPSFAN MATVPSCPAP SSSPALSSVP ESSFYSSSGG ENSTTRP00000008387/1-944 FCANSNTASA GSHPATSFAN MATVPSCPAP SSSPALSSVP ESSFYSSSGG bmy_06756T0/1-858 FCANSNTASA SSHPATSFAN MATVPSCPAP SSSPALSSVP ESSFYSSSGG BACU004309/1-792 FCANSNTASA SSHPATSFAN MATVPSCPAP SSSPALSSVP ESSFYSSSGG 751 800 ENSP00000268616/1-949 GG----STGN IPASNPNHHH HHHHQQPPAP PQPAP-PPPG CIVCTSCGCS ENSBTAP00000018957/1-947 GGGGGSSPGN LPASAQNHHH HHHHQQQPVP QQPAPAPPPG CVVCTSCGCS ENSTTRP00000008387/1-944 GG----XXXX XXXXXXXXXH HHHHQQQPAP QQPAPAPPPG CVVCTSCGCS bmy_06756T0/1-858 GGG---SPGN LPASAQNHHH HHHHQQQPAP QQPAPAPPPG CVVCTSCGCS BACU004309/1-792 GGG---SPGN LPASAQNHHH HHHHQQQPAP QQPAPAPPPG CVVCTSCGCS 801 850 ENSP00000268616/1-949 GSCGSSGLTV SYANYFQHPF SGPSVFTFPF LPFSPMCSSG YVSAQQYGGG ENSBTAP00000018957/1-947 GSCGSSGLTV SYASYFQHPF SGPSVFPFPF LPFSPVCGSG YMGAQQYGGG ENSTTRP00000008387/1-944 GSCGSSGLTV SYANYFQHPF SGPSVFPFPF LPFSPMCGSG YVGAQQYGGG bmy_06756T0/1-858 GSCGSSGLTV SYANYFQHPF SGPSVFPFPF LPFSPMCGSG YVGAQQYGGG BACU004309/1-792 GSCGSSGLTV SYANYFQHPF SGPSVFPFPF LPFSPMCGSG YVGAQQYGGG 851 900 ENSP00000268616/1-949 STFPVVHAPY SSSGTPDPVL SGQSTFAVPP MQNFMAGTAG VYQTQGLVGS ENSBTAP00000018957/1-947 A-FPVVHSPY GGGVGPEPVL GGQSAFTVPP VQNFM-GAAG VYQAQGLVGS ENSTTRP00000008387/1-944 A-FPVVHSPY SSGVGPEPVL GGQSAFTVPP VQNFM-GAAG VYQAQGLVGS bmy_06756T0/1-858 A-FPVVHAPY GSGVGPEPVL GGQSAFTVPP VQNFM-GAAG VYQAQGLVGS BACU004309/1-792 A-FPVVHSPY GSGVGPEPVL GGQSAFTVPP VQNFM-GPGG VYQAQGLVGS 901 950 ENSP00000268616/1-949 SNGSSHKKSG NLSCYNCGAT GHRAQDCKQP SMDFNRPGTF RLKYAPPAES ENSBTAP00000018957/1-947 SNGSSHKKSG NLSCYNCGAT GHRAQDCKQP SMDFNRQGTF RLKYAPPAES ENSTTRP00000008387/1-944 SNGSSHKKSG NLSCYNCGAT GHRAQDCKQP SMDFNRQGTF RLKYAPPAES bmy_06756T0/1-858 SNGSGHKKSG HLSCYNCGAT GHRAQDCKQP SMDSNRQGTF RLKYAPPAES BACU004309/1-792 SNGSGHKKSG HLSCYNCGAT GHRAQDCKQP SMDSNRQGTF RLKYAPPAES 951 1000 ENSP00000268616/1-949 LDSTD ENSBTAP00000018957/1-947 LDSTD ENSTTRP00000008387/1-944 LDSTD bmy_06756T0/1-858 LDSTD BACU004309/1-792 LDSTD