KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:08 2014 Check: 00 .. Name: ENSTTRP00000016132/1-945 Len: 945 Check: 2711 Weight: 1.00 Name: ENSP00000334329/1-945 Len: 945 Check: 8287 Weight: 1.00 Name: ENSBTAP00000018961/1-945 Len: 945 Check: 6745 Weight: 1.00 Name: bmy_16277T0/1-944 Len: 945 Check: 7496 Weight: 1.00 Name: BACU019149/1-906 Len: 945 Check: 8845 Weight: 1.00 // 1 50 ENSTTRP00000016132/1-945 MWARSGARGA LLLTLLLCWD LRLSQAXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000334329/1-945 MGARSGARGA LLLALLLCWD PRLSQAGTDS GSEVLPDSFP SAPAEPLPYF ENSBTAP00000018961/1-945 MWARSGARGA LLLALLLCWD LRLSQAGTDS GREELPDSFP SAPAETLPHF bmy_16277T0/1-944 PPGDGGDPGL PACGLTEPSH PPPS-AGTDS GSEVLPDSFP SAPAEPLPQF BACU019149/1-906 ---------- ---------- -------TDS GSEVLPDSFP SAPAEPLPHF 51 100 ENSTTRP00000016132/1-945 XXXXXXXXXX XXXXXXXXXX XXXXXXXYFK CNGEWVSQND HVTQESLDEA ENSP00000334329/1-945 LQEPQDAYIV KNKPVELRCR AFPATQIYFK CNGEWVSQND HVTQEGLDEA ENSBTAP00000018961/1-945 LQEPQDAYIV KNKPVELGCR AFPATQIYFK CNGEWVSQSD HVTQEGLDEA bmy_16277T0/1-944 LREPQDAYIV KNKPVELRCR AFPATQIYFK CNGEWVSQNN HVTQESLDEA BACU019149/1-906 LREPQDAYIV KNKPVELRCR AFPATQIYFK CNGEWVSQNN HVTQESLDEA 101 150 ENSTTRP00000016132/1-945 TGLQVREVQI EVLRQQVEEL FGLEDYWCQC VAWSSAGTTK SRRAYVRIAX ENSP00000334329/1-945 TGLRVREVQI EVSRQQVEEL FGLEDYWCQC VAWSSAGTTK SRRAYVRIAY ENSBTAP00000018961/1-945 TGLQVREVQI EVSRQQVEEL FGLEDYWCQC VAWSSAGTTK SRRAYVRIAY bmy_16277T0/1-944 TGLQVREVQI EVSRQQVEEL FGLEDYWCQC VAWSSAGTTK SRRAYVRIAY BACU019149/1-906 TGLQVREVQI EVSRQQVEEL FGLEDYWCQC VAWSSAGTTK SRRAYVRIAY 151 200 ENSTTRP00000016132/1-945 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXVEWLKN EDVIDPTQDT ENSP00000334329/1-945 LRKNFDQEPL GKEVPLDHEV LLQCRPPEGV PVAEVEWLKN EDVIDPTQDT ENSBTAP00000018961/1-945 LRKNFDQEPL GKEVPLDHEV LLQCRPPEGV PVAEVEWLKN EDVIDPTQDT bmy_16277T0/1-944 LRKNFDQEPL GKEVPLDHEV LLQCRPPEGV PVAEVEWLKN EDVIDPTQDT BACU019149/1-906 LRKNFDQEPL GKEVPLDHEV LLQCRPPEGV PVAEVEWLKN EDVIDPTQDT 201 250 ENSTTRP00000016132/1-945 NFLLTIDHNL IIRQARLSDT ANYTCVAKNI VAKRRSTTAT IIVYVNGGWS ENSP00000334329/1-945 NFLLTIDHNL IIRQARLSDT ANYTCVAKNI VAKRRSTTAT VIVYVNGGWS ENSBTAP00000018961/1-945 NFLLTIDHNL IIRQARLSDT ANYTCVAKNI VAKRRSTTAT VIVYVNGGWS bmy_16277T0/1-944 NFLLTIDHNL IIRQARLSDT ANYTCVAKNI VAKRRSTTAT IIVYVNGGWS BACU019149/1-906 NFLLTIDHNL IIRQARLSDT ANYTCVAKNI VAKRRSTTAT IIVYVNGGWS 251 300 ENSTTRP00000016132/1-945 SWAEWSPCSN RCGRGWQKRT RTCTNPAPLN GGAFCEGQAF QKTACTTVCP ENSP00000334329/1-945 SWAEWSPCSN RCGRGWQKRT RTCTNPAPLN GGAFCEGQAF QKTACTTICP ENSBTAP00000018961/1-945 SWAEWSPCSN RCGRGWQKRT RTCTNPAPLN GGAFCEGQAF QKTACTTVCP bmy_16277T0/1-944 SWAEWSPCSN RCGRGWQKRT RTCTNPAPLN GGAFCEGQAF QKTACTTVCP BACU019149/1-906 SWAEWSPCSN RCGRGWQKRT RTCTNPAPLN GGAFCEGQAF QKTACTTVCP 301 350 ENSTTRP00000016132/1-945 VDGAWTEWSK WSACSTECAH WRSRECMAPP PQNGGRDCSG TLLDSKNCTD ENSP00000334329/1-945 VDGAWTEWSK WSACSTECAH WRSRECMAPP PQNGGRDCSG TLLDSKNCTD ENSBTAP00000018961/1-945 VDGGWTEWSK WSACSTECAH WRSRECMAPP PQNGGRDCSG TLLDSKNCTD bmy_16277T0/1-944 VDGAWTEWSK WSACSTECAH WRSRECMAPP PQNGGRDCSG TLLDSKNCTD BACU019149/1-906 VDGAWTEWSK WSACSTECAH WRSRECMAPP PQNGGRDCSG TLLDSKNCTD 351 400 ENSTTRP00000016132/1-945 GLCVQNKKTL SDPKSHLLES SGDVALYAGL VVSILVVVTV LVVVGVVVYR ENSP00000334329/1-945 GLCMQNKKTL SDPNSHLLEA SGDAALYAGL VVAIFVVVAI LMAVGVVVYR ENSBTAP00000018961/1-945 GLCVQNKKTL SDPKSHLLET SGDMALYAGL VVSIFVVVAV LIVVAVVVYR bmy_16277T0/1-944 GLCVQNKKTL SDPKSHLLES SGDVALYAGL VVSIFVVLVV LVVVGVVVYR BACU019149/1-906 GLCVQNKKTL SDPKSHLLES SGDVALYAGL VVSIFVVVAV LVVVGVVVYR 401 450 ENSTTRP00000016132/1-945 RNCRDFDTDI TDSSAALTGG FHPVNFKTAR PNNPQLLHPS VPPDLTASAG ENSP00000334329/1-945 RNCRDFDTDI TDSSAALTGG FHPVNFKTAR PSNPQLLHPS VPPDLTASAG ENSBTAP00000018961/1-945 RNCRDFDTDI TDSSAALTGG FHPVNFKTAR PNNPQLLHPS VPPDLTASAS bmy_16277T0/1-944 RNCRDFDTDI TDSSAALTGG FHPVNFKTAR PNNPQLLHPS VPPDLTASAG BACU019149/1-906 RNCRDFDTDI TDSSAALTGG FHPVNFKTAR PNNPQLLHPS VPPDLTASAG 451 500 ENSTTRP00000016132/1-945 IYRGPMYALQ DSVDKIPMTN SPLLDSLPNL KIKVYNSSTT SSGPGLADGA ENSP00000334329/1-945 IYRGPVYALQ DSTDKIPMTN SPLLDPLPSL KVKVYSSSTT GSGPGLADGA ENSBTAP00000018961/1-945 IYRGPKYALQ DSADKIPMTN SPLLDPLPNL KIKVYSSGTT GSGPGLADGA bmy_16277T0/1-944 IYRGPMYALQ DSADKIPMTN SPLLDPLPNL KIKVYNSSTT SSGPGLADGA BACU019149/1-906 IYRGPMYALQ DSADKIPMTN SPLLDPLPNL KIKVYNSSTT SSGPGLADGA 501 550 ENSTTRP00000016132/1-945 ELLGVLPPGT YPGDFARDAH FLHLRSASLG SQQLLGMPRD PGSSVSGTFG ENSP00000334329/1-945 DLLGVLPPGT YPSDFARDTH FLHLRSASLG SQQLLGLPRD PGSSVSGTFG ENSBTAP00000018961/1-945 DLLGVLPPGT YPGDFARDTH FLHLRSASLG SQQLLGLPRD PGSSVSGTFG bmy_16277T0/1-944 DLLGVLPPGT YPGDFARDAH FLHLRSASLG SQQLLGMPRD PGSSVSGTFG BACU019149/1-906 DLLGVLPPGT YPGDFARDAH FLHLRSASLG SQQLLGMPRD PGSSVSGTFG 551 600 ENSTTRP00000016132/1-945 CLGGRLSIPD TGVSLLVPNG AIPQGKFYEM YLLINKAENT LPLSEGTQTV ENSP00000334329/1-945 CLGGRLSIPG TGVSLLVPNG AIPQGKFYEM YLLINKAEST LPLSEGTQTV ENSBTAP00000018961/1-945 CLGGRLSIPG TGVSLLVPNG AIPQGKFYEM YLLINKAENT LPLSEGTQTV bmy_16277T0/1-944 CLGGRLSIPD TGVSLLVPNG AIPQGKFYEM YLLINKAENT LPLSEGTQTV BACU019149/1-906 CLGGRLSIPD TGVSLLVPNG AIPQGKFYEM YLLINKAENT LPLSEGTQTV 601 650 ENSTTRP00000016132/1-945 LSPSVTCGPT GLLLCRPVIL TVPHCAEVSA GDWIFQLKTQ AHQGHWEEVV ENSP00000334329/1-945 LSPSVTCGPT GLLLCRPVIL TMPHCAEVSA RDWIFQLKTQ AHQGHWEEVV ENSBTAP00000018961/1-945 LSPAVTCGPT GLLLCRPVIL TVPHCAEVSA GNWIFQLKTQ AHQGHWEEVV bmy_16277T0/1-944 LSPSVTCGPT GLLLCRPVIL TLPHCAEVSA GDWIFQLKTQ AHQGHWEEVV BACU019149/1-906 LSPSVTCGPT GLLLCRPVIL TLPHCAEVSA GDWIFQLKTQ AHQGHWEEVV 651 700 ENSTTRP00000016132/1-945 TLDEETLNTP CYCQLEARSC HILLDQLGTY VFTGESYSRL AVKRLQLAIF ENSP00000334329/1-945 TLDEETLNTP CYCQLEPRAC HILLDQLGTY VFTGESYSRS AVKRLQLAVF ENSBTAP00000018961/1-945 TLDEETLNTP CYCQLEARSC HILLDQLGTY VFTGESYSRS AVKRLQLAIF bmy_16277T0/1-944 TLDEETLNTP CYCQLEARSC HILLDQLGTY VFTGESYSRS AVKRLQLAIF BACU019149/1-906 TLDEETLNTP CYCQLEARSC HILLDQLGTY VFTGESYSRS AVKRLQLAIF 701 750 ENSTTRP00000016132/1-945 APALCTSLEY SLRVYCLEDT PVALKEVLEL ERTLGGYLVE EPKPLLFKDS ENSP00000334329/1-945 APALCTSLEY SLRVYCLEDT PVALKEVLEL ERTLGGYLVE EPKPLMFKDS ENSBTAP00000018961/1-945 APALCTSLEY SLRVYCLEDT PVALKEVLEL ERTLGGYLVE EPKPLLFKDS bmy_16277T0/1-944 APALCTSLEY SLRVYCLEDT PVALKEVLEL ERTLGGYLVE EPKPLLFKDS BACU019149/1-906 APALCTSLEY SLRVYCLEDT PVALKEVLEL ERTLGGYLVE EPKPLLFKDS 751 800 ENSTTRP00000016132/1-945 YHNLRLSLHD LPHAHWRSKL LAKYQEIPFY HIWSGSQKAL HCTFTLERHS ENSP00000334329/1-945 YHNLRLSLHD LPHAHWRSKL LAKYQEIPFY HIWSGSQKAL HCTFTLERHS ENSBTAP00000018961/1-945 YHNLRLSLHD IPHAHWRSKL LAKYQEIPFC HIWSGSQKAL HCTFTLERHS bmy_16277T0/1-944 YHNLRLSLHD MPHAHWRSKL LAKYQEIPFY HIWSGSQKAL HCTFTLERHS BACU019149/1-906 YHNLRLSLHD MPHAHWRSKL LAKYQEIPFY HIWSGSQKAL HCTFTLERHS 801 850 ENSTTRP00000016132/1-945 LASTELTCKI CVRQVEGEGQ IFQLHTTLAE TPAGSLDALC SAPSGAVTTQ ENSP00000334329/1-945 LASTELTCKI CVRQVEGEGQ IFQLHTTLAE TPAGSLDTLC SAPGSTVTTQ ENSBTAP00000018961/1-945 LASTELTCKI CVRQVEGEGQ IFQLHTTLAE TPAGSLDALC SAPSSVVTTQ bmy_16277T0/1-944 LASTELTCKI CVRQVEGEGQ IFQLHTTLAE TPAGSLDALC SAPSSAVTTQ BACU019149/1-906 LASTELTCKI CVRQVEGEGQ IFQLHTTLAE TPAGSLDALC SAPSSAVTTQ 851 900 ENSTTRP00000016132/1-945 LGPYAFKIPV SIRQKICNSL DAPNSRGNDW RLLAQKLSMD RYLNYFATKA ENSP00000334329/1-945 LGPYAFKIPL SIRQKICNSL DAPNSRGNDW RMLAQKLSMD RYLNYFATKA ENSBTAP00000018961/1-945 LGPYAFKIPL SIRQKICNSL DAPNSRGNDW RLLAQKLSMD RYLNYFATKA bmy_16277T0/1-944 LGPYAFKIPL SIRQKICNSL DAPNSRGNDW RLLAQKLSMD RYLNYFATKA BACU019149/1-906 LGPYAFKIPL SIRQKICNSL DAPNSRGNDW RLLAQKLSMD RYLNYFATKA 901 950 ENSTTRP00000016132/1-945 SPTGVILDLW EALQQDDGDL NSLASALEEM GKSEMLVAMA TDGDC ENSP00000334329/1-945 SPTGVILDLW EALQQDDGDL NSLASALEEM GKSEMLVAVA TDGDC ENSBTAP00000018961/1-945 SPTGVILDLW EALQQDDGDL NSLASALEEM GKSEMLVAMA TDGEC bmy_16277T0/1-944 SPTGVILDLW EALQQDDGDL NSLASALEEM GKSEMLVAMA TDGDC BACU019149/1-906 SPTGVILDLW EALQQDDGDL NSLASALEEM GKS------- -----