KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:14 2014 Check: 00 .. Name: ENSP00000350734/1-575 Len: 587 Check: 8828 Weight: 1.00 Name: ENSTTRP00000009451/1-551 Len: 587 Check: 9981 Weight: 1.00 Name: ENSBTAP00000018992/1-555 Len: 587 Check: 804 Weight: 1.00 Name: bmy_18849T0/1-418 Len: 587 Check: 5239 Weight: 1.00 Name: BACU002700/1-556 Len: 587 Check: 1371 Weight: 1.00 // 1 50 ENSP00000350734/1-575 MADRGGVGEA AAVGAS-PAS VPGLNPTLGW RERLRAGLAG TGASLWFVAG ENSTTRP00000009451/1-551 MADGDGLGEA TAAAASPPAP APGLSPPLGW RERLRA---- ----VW--AG ENSBTAP00000018992/1-555 MADGDGLGEA AIAAAS-PAS APGLSPSLGW RERLRAGLAG TGASLWFVAG bmy_18849T0/1-418 MADGDGLGEA ATAAASPPAP APGLSPPLGW RERLRAGLAG TGASLWFVAG BACU002700/1-556 MADGDGLGEA ATAAASSPAP APGLSPPLGW RERLRAGLAG TGASLWFVAG 51 100 ENSP00000350734/1-575 LGLLYALRIP LRLCENLAAV TVFLNSLTPK FYVALTGTSS LISGLIFIFE ENSTTRP00000009451/1-551 LGLLYALRVP LRLCENLAAV TVFLNSLTPK FYVALTGTSS LISGLIFIFE ENSBTAP00000018992/1-555 LGLLYALRVP LRLCENLAAV TVFLNSLTPK FYVALTGTSS LISGLIFIFE bmy_18849T0/1-418 LGLLYALRVP LRLCENLAAV TVFLNSLTPK FYVALTGTSS LISGLIFIFE BACU002700/1-556 LGLLYALRVP LRLCENLAAV TVFLNSLTPK FYVALTGTSS LISGLIFIFE 101 150 ENSP00000350734/1-575 WWYFHKHGTS FIEQVSVSHL QPLMGGTESS ISEPGSPSRN RENETSRQNL ENSTTRP00000009451/1-551 WWYFHKHGTS FIEQVSVSHL RPLMGGTEGS ISEPGSPSSS RESETSRQNL ENSBTAP00000018992/1-555 WWYFHKHGTS FIEQVSVSHL RPLMGGTESS ISEPGSPSNN RESETSRQNL bmy_18849T0/1-418 WWYFHKHGTS FIEQVSVSHL RPLMGGTEGS ISEPGSPSSS RE-------- BACU002700/1-556 WWYFHKHGTS FIEQVSVSHL RPLMGGTEGS ISEPGSPSSS RESETGRQNL 151 200 ENSP00000350734/1-575 SECKVWRNPL NLFRGAEYRR YTWVTGKEPL TYYDMNLSAQ DHQTFFTCDT ENSTTRP00000009451/1-551 SECKVWRNPL NLFRGAEYRR YTWVTGKEPL TYYDMNLSAQ DHQTFFTCDT ENSBTAP00000018992/1-555 SECKVWRNPL NLFRGAEYRR YTWVTGKEPL TYYDMNLSAQ DHQTFFTCDT bmy_18849T0/1-418 -KCKVWRNPL NLFRGAEYRR YTWVTGKEPL TYYDMNLSAQ DHQTFFTCDT BACU002700/1-556 SECKVWRNPL NLFRGAEYRR YTWVTGKEPL TYYDMNLSAQ DHQTFFTCDT 201 250 ENSP00000350734/1-575 DFLRPSDTVM QKAWRERNPP ARIKAAYQAL ELNNDCATAY VLLAEEEATT ENSTTRP00000009451/1-551 DFLRPSDT-- ---------- --IKAAYQAL ELNNDCATAY VLLAEEEATT ENSBTAP00000018992/1-555 DFLRPSDTVM QKAWRERNPP ARIKAAYQAL ELNNDCATAY VLLAEEEATT bmy_18849T0/1-418 DFLRPSDTVM QKAWRERNPP ARIKAAYQAL ELNNDCATAY VLLAEEEATT BACU002700/1-556 DFLRPSDTVM QKAWRERNPP ARIKAAYQAL ELNNDCATAY VLLAEEEATT 251 300 ENSP00000350734/1-575 IVDAERLFKQ ALKAGETIYR QSQQCQHQSP QHEAQLRRDT NVLVYIKRRL ENSTTRP00000009451/1-551 IVDAERLFKQ ALKAGETIYR RSQQCQHQSP QHEAQLRRDT NVLVYIKRRL ENSBTAP00000018992/1-555 IVDAERLFKQ ALKAGETIYR RSQQCQHQSP QHEAQLRRDT NVLVYIKRRL bmy_18849T0/1-418 IVDAERLFKQ ALKAGETIYR RSQQCQHQSP QHEAQLRRDT NVLVYVKRRL BACU002700/1-556 IVDAERLFKQ ALKAGETIYR RSQQCQHQSP QHEAQLRRDT NVLVYIKRRL 301 350 ENSP00000350734/1-575 AMCARKLGRI REAVKIMRDL MKEFPPLTML NIHENLLESL LELQAYPDVQ ENSTTRP00000009451/1-551 AMCARKLGRI REAVKIMRDL MKEFPPLTML NIHENLLESL LELQAYADVQ ENSBTAP00000018992/1-555 AMCARKLGRI REAVKIMRDL MKEFPPLTML NIHENLLESL LELQAYADVQ bmy_18849T0/1-418 AMCARKLGRI REAVKIMRDL MKEFPPLTML NIHENLLESL LELQAYADVQ BACU002700/1-556 AMCARKLGRI REAVKIMRDL MKEFPPLTML NIHENLLESL LELQAYADVQ 351 400 ENSP00000350734/1-575 AVLAKYDDIS LPKSAAICYT AALLKTRTVS EKFSPETASR RGLSTAEINA ENSTTRP00000009451/1-551 AVLAKYDDIS LPKSAAICYT AALLKTRTVS DKFSPETASR RGLSTAEINA ENSBTAP00000018992/1-555 AVLAKYDDIS LPKSAAICYT AALLKTRTVS DKFSPETASR RGLSTAEINA bmy_18849T0/1-418 AVLAKYDDIS LPKSAAICYT AALLKTRTVS DKFSPETASR RGLSTAEINA BACU002700/1-556 AVLAKYDDIS LPKSAAICYT AALLKTRTVS DKFSPETASR RGLSTAEINA 401 450 ENSP00000350734/1-575 VEAIHRAVEF NPHVPKYLLE MKSLILPPEH ILKRGDSEAI AYAFFHLQHW ENSTTRP00000009451/1-551 VEAIHRAVEF NPHVPKYLLE MKSLILPPEH ILKRGDSEAI AYAFFHLQHW ENSBTAP00000018992/1-555 VEAIHRAVEF NPHVPKYLLE MKSLILPPEH ILKRGDSEAI AYAFFHLQHW bmy_18849T0/1-418 VEAIHRAVEF NPHVPK---- VRNFMI---- ---------- ---------- BACU002700/1-556 VEAIHRAVEF NPHVPKYLLE MKSLILPPEH ILKRGDSEAI AYAFFHLQHW 451 500 ENSP00000350734/1-575 KRIEGALNLL QCTWEGTFRM IPYPLEKGHL FYPYPSCTET ADRELLPTFH ENSTTRP00000009451/1-551 KRIEGALNLL QCTWEGTFRM IPYPLEKGHL FYPYPSCTET ADRELLPXXX ENSBTAP00000018992/1-555 KRIEGALHLL QCTWEGTFRM IPYPLEKGHL FYPYPSCTET ADRELLPSFH bmy_18849T0/1-418 ---------- ---------- ---------- ---------- ---------- BACU002700/1-556 KRIEGALNLL QCTWEGT--- ---------- ---------- --------FH 501 550 ENSP00000350734/1-575 HVSVYPKKEL PLFIHFTAGF CSSTAMIAIL THQFPEIMGI FAKA-V--LG ENSTTRP00000009451/1-551 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX-V--LG ENSBTAP00000018992/1-555 HVSVYPKKEI PFFIHFTAGL CSSTAMIAFL THQFPEIMGV FAKA-VSMIS bmy_18849T0/1-418 --------EI LFL------- ---------- ---------- ---------- BACU002700/1-556 HVSVYPKKEL PFFIHFTAGL CSSTAMIALL THQFPEIMGV FAKAEIAKLG 551 600 ENSP00000350734/1-575 LWCPQPWASS GFEENTQDLK SEDLGLSSG- ------- ENSTTRP00000009451/1-551 FLCLQP-APS VFEENTQDLK SEALGLSSG- ------- ENSBTAP00000018992/1-555 RTCIEYL--- ---------- ---------- ------- bmy_18849T0/1-418 ---------- ---------- ---------- ------- BACU002700/1-556 LYELELGAQG KAQSSMRCQK RPASFHRESP HRRPQGP