KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:15 2014 Check: 00 .. Name: ENSTTRP00000009482/1-997 Len: 1061 Check: 7465 Weight: 1.00 Name: ENSP00000399797/1-1003 Len: 1061 Check: 4943 Weight: 1.00 Name: ENSBTAP00000018997/1-1003 Len: 1061 Check: 6709 Weight: 1.00 Name: bmy_18847T0/1-1053 Len: 1061 Check: 4425 Weight: 1.00 Name: BACU002698/1-1028 Len: 1061 Check: 6811 Weight: 1.00 // 1 50 ENSTTRP00000009482/1-997 MPSKFSCRQL RETG----QR SXXXXXXXXX X------XXX XXXXXXXXXX ENSP00000399797/1-1003 MPSKFSCRQL REAG----QC FES--FLVVR G------LDM ETDRERLRTI ENSBTAP00000018997/1-1003 MPSKFSCRQL RETG----QR FEN--FLVDR G------QDR ETDRERLRTI bmy_18847T0/1-1053 MEGGRSAVQI LNVSMKCVAR GDVLWLLGAR GPIAFPENIK NSRHPQPRPV BACU002698/1-1028 MPSKFSCRQL RETG----QR FEN--FLVDR G------LDR ETDRERLRTI 51 100 ENSTTRP00000009482/1-997 XXX------- ---------- --XXXXXXXX XXXXXXXMLY GMKIANL-YV ENSP00000399797/1-1003 YNR------- ---------- --DFKISFGT PAPGFSSMLY GMKIANLAYV ENSBTAP00000018997/1-1003 YNQ------- ---------- --DFKTSFGT PAPGFSSMLY GMKIANLAYV bmy_18847T0/1-1053 PHRAALRCPP QLAAPVPHSP VSSAPGSFGT PAPGFSSMLY GMKIANLAYV BACU002698/1-1028 YNQ------- ---------- --DFKTSFGT PAPGFSSMLY GMKIANLAYV 101 150 ENSTTRP00000009482/1-997 TKTRVRFFGL DRWADVWFPE KRRMKPGSEI SKHHKSLLAT IFYDRTEYLH ENSP00000399797/1-1003 TKTRVRFFRL DRWADVRFPE KRRMKLGSDI SKHHKSLLAK IFYDRAEYLH ENSBTAP00000018997/1-1003 TKTRVRFFGL DRWADVWFPE KRRMKPGLEM SKHHRSLLAT IFHDRAEYMH bmy_18847T0/1-1053 TKTRVRFFGL DRWADVWFPE KRRMKPGSEI SKHHKSLLAT IFHDRAEYLH BACU002698/1-1028 TKTRVRFFGL DRWADVWFPE KRRMKPGSEI SKHHKSLLAT IFYDRAEYLH 151 200 ENSTTRP00000009482/1-997 GKHGVDVEVQ GPHEARDGQL LIRLDLNRKE VLTLRLRNGG TQPVTLTHLF ENSP00000399797/1-1003 GKHGVDVEVQ GPHEARDGQL LIRLDLNRKE VLTLRLRNGG TQSVTLTHLF ENSBTAP00000018997/1-1003 GKHGVNVEVQ GPHEARDGQL LIRLDLNRKE VLTLRLRNGG TQPVTLTHLF bmy_18847T0/1-1053 GKHGVDVEVQ GPHEARDGQL LIRLDLNRKE VLTLRLRNGG TQPVTLTHLF BACU002698/1-1028 GKHGVDVEVQ GPHEARDGQL LIRLDLNRKE VLTLRLRNGG TQPVTLTHLF 201 250 ENSTTRP00000009482/1-997 PFCRTPQFAF CNGDRELPCP LGPGECYELH VHCKTSFVGY FPATVLWELL ENSP00000399797/1-1003 PLCRTPQFAF YNEDQELPCP LGPGECYELH VHCKTSFVGY FPATVLWELL ENSBTAP00000018997/1-1003 PFCRTPQFSF CNGDRELPCL LGPGECYELH VHCKTSFVGY FPATVLWELL bmy_18847T0/1-1053 PFCRTPQFAF CNDDRELPCP LGPGECYELH VHCKTSFVGY FPATVLWELL BACU002698/1-1028 PFCRTPQFAF CNDDRELPCP LGPGECYELH VHCKTSFVGY FPATVLWELL 251 300 ENSTTRP00000009482/1-997 GPGEPGSEGA GTFYIARFLA VVAHSPLAAQ LKPTTP-KRT QITRNPVVTN ENSP00000399797/1-1003 GPGESGSEGA GTFYIARFLA AVAHSPLAAQ LKPMTPFKRT RITGNPVVTN ENSBTAP00000018997/1-1003 GPGEPGSEGA GTFYIARFLA AVAHSPLAAQ LKPTTPFKRT QVSRNPVVTR bmy_18847T0/1-1053 GPGEPGSEGA GTFYIARFLA VVAHSPLAAQ LKPTTPFKRT QITRNPVVTN BACU002698/1-1028 GPGEPGSEGA GTFYIARFLA VVAHSPLAAQ LKPTTPFKRT QITRNPVVTN 301 350 ENSTTRP00000009482/1-997 RIEEGERPDR XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000399797/1-1003 RIEEGERPDR AKGYDLELSM ALGTYYPPPR LRQLLPMLLQ GTSIFTAPKE ENSBTAP00000018997/1-1003 RIEEGERPDR AKNYDLEFSL PLGTYYPPPR LRQLLPVLLR GTSIFTAPKE bmy_18847T0/1-1053 RIEEGERPDR AKSYDLELSM ALGTYYPPPR LRQLLPILLQ GTSIFTAPKE BACU002698/1-1028 RIEEGERPDR AKSYDLELSM ALGTYYPPPR LRQLLPILLQ GTSIFTAPKE 351 400 ENSTTRP00000009482/1-997 XXXXXAQLET PLKWRNYEVK LRLLLHLEEL QMEHDIRHYD LESVPMTWDP ENSP00000399797/1-1003 IAEIKAQLET ALKWRNYEVK LRLLLHLEEL QMEHDIRHYD LESVPMTWDP ENSBTAP00000018997/1-1003 IAEIKAQLQT TLKWRNYEVK LRLLLHLEEL QMEHDIRHYD LESVPMTWDP bmy_18847T0/1-1053 IAEIKAQLET PLKWRNYEVK LRLLLHLEEL QMEHDIRHYD LESVPMTWDP BACU002698/1-1028 IAEIKAQLET PLKWRNYEVK LRLLLHLEEL QMEHDIRHYD LESVPMTWDP 401 450 ENSTTRP00000009482/1-997 VDQNPGLLTL EVPGVAESRP SVLRGDHLFA LLSSETHQED PVTYKGFVHK ENSP00000399797/1-1003 VDQNPRLLTL EVPGVTESRP SVLRGDHLFA LLSSETHQED PITYKGFVHK ENSBTAP00000018997/1-1003 IDRNPRLLTL EVPGVAESRP SVLRGDHLFA LLSSETHHED PVTYKGFVHK bmy_18847T0/1-1053 VDQNPGLLTL EVPGVAESRP SVLRGDHLFA LLSSETHQED PVTYKGFVHK BACU002698/1-1028 VDQNPGLLTL EVPGVAESRP SVLRGDHLFA LLSSETHQED PVTYKGFVHK 451 500 ENSTTRP00000009482/1-997 VELDRVKLSF STGLLSRFVD GLTFKVNFTF NRQPLRVQHR ALELTGRWPL ENSP00000399797/1-1003 VELDRVKLSF SMSLLSRFVD GLTFKVNFTF NRQPLRVQHR ALELTGRWLL ENSBTAP00000018997/1-1003 VELDRVKLSF STSLLSRFVD GLTFKVNFTF NRQPLRVQHR ALELTGRWPL bmy_18847T0/1-1053 VELDRVKLSF STSLLSRFVD GLTFKVNFTF NRQPLRVQHR ALELTGRWPL BACU002698/1-1028 VELDRVKLSF STSLLSRFVD GLTFKVNFTF NRQPLRVQHR ALELTGRWPL 501 550 ENSTTRP00000009482/1-997 WPLLFPVASR GVPLLPSDVK LKLYDRSLES NPEQLQAMKH IVMGTTRPAP ENSP00000399797/1-1003 WPMLFPVAPR DVPLLPSDVK LKLYDRSLES NPEQLQAMRH IVTGTTRPAP ENSBTAP00000018997/1-1003 EPMLFPVASR GVPLLPSDVK LKLYDRSLES NPEQLQAMKH IVMGTTRPAP bmy_18847T0/1-1053 CPLLFPVASR GVPLLPSDVK LKLYDRSLES NPEQLQAMKH IVMGTTRPAP BACU002698/1-1028 CPLLFPVASR GVPLLPSDVK LKLYDRSLES NPEQLQAMKH IVMGTTRPAP 551 600 ENSTTRP00000009482/1-997 YIIFGPPGTG KTVTLVEAIK QVVKHLPKAH ILVCAPSNSG ADLLCQRLRV ENSP00000399797/1-1003 YIIFGPPGTG KTVTLVEAIK QVVKHLPKAH ILACAPSNSG ADLLCQRLRV ENSBTAP00000018997/1-1003 YIIFGPPGTG KTVTLVEAIK QVVKHLPKAH ILACAPSNSG ADLLCQRLRV bmy_18847T0/1-1053 YIIFGPPGTG KTVTLVEAIK QVVKHLPKAH ILACAPSNSG ADLLCQRLRV BACU002698/1-1028 YIIFGPPGTG KTVTLVESIK QVVKHLPKAH ILACAPSNSG ADLLCQRLRV 601 650 ENSTTRP00000009482/1-997 HLPSSIYR-L APS-DIRMVP -DIKXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000399797/1-1003 HLPSSIYRLL APSRDIRMVP EDIKPCCNWD AKKGEYVFPA KKKLQEYRVL ENSBTAP00000018997/1-1003 HLPSSIYRLL APSRDIHLVP EDIKPCCNWD AKKGDFVFPS KKKLQEYRVL bmy_18847T0/1-1053 HLPSSIYRLL APSRDIRM-- ----PCCNWD AKKGDYVFPS KKKLQEYRVL BACU002698/1-1028 HLPSSIYRLL APSRDIRMVP EDIKPCCNWD AKKGDYVFPS KKKLQEYRVL 651 700 ENSTTRP00000009482/1-997 XXXXXXXXXL VSAQFPIDHF THIFIDEAGH SMEPESLVAI AGLMEVKEAD ENSP00000399797/1-1003 ITTLITAGRL VSAQFPIDHF THIFIDEAGH CMEPESLVAI AGLMEVKETG ENSBTAP00000018997/1-1003 ITTLITASRL VSAQFPIDHF THIFIDEAGH AMEPESLVAI AGLMEVKEAD bmy_18847T0/1-1053 ITTLITASRL VSAQFPIDHF THIFIDEAGH SMEPESLVAI AGLMEVKEAD BACU002698/1-1028 ITTLITASRL VSAQFPIDHF THIFIDEAGH SMEPESLVAI AGLMEVKEAD 701 750 ENSTTRP00000009482/1-997 NPGGQLVLAG DPRQLGPVLR CPLTQKHGLG YSLLERLLTY NALYKKGPDG ENSP00000399797/1-1003 DPGGQLVLAG DPRQLGPVLR SPLTQKHGLG YSLLERLLTY NSLYKKGPDG ENSBTAP00000018997/1-1003 NPGGQLVLAG DPRQLGPVLR CPLTQKHGLG YSLLERLLTF NALYKKGPDG bmy_18847T0/1-1053 NPGGQLVLAG DPRQLGPVLR CPLTQKHGLG YSLLERLLTY NALYKKGPDG BACU002698/1-1028 NPGGQLVLAG DPRQLGPVLR CPLTQKHGLG YSLLERLLTY NALYKKGPDG 751 800 ENSTTRP00000009482/1-997 YNAQFITKLL RNYRSHPTIL DIPNQLYYEG ELQACADVVD RERFCRWEGL ENSP00000399797/1-1003 YDPQFITKLL RNYRSHPTIL DIPNQLYYEG ELQACADVVD RERFCRWAGL ENSBTAP00000018997/1-1003 YNPQFITKLL RNYRSHPTIL DVPNRLYYDG ELQACADVVD RERFCRWEGL bmy_18847T0/1-1053 YNPQFITKLL RNYRSHPTIL DIPNQLYYEG ELQACADVVD RERFCRWEGL BACU002698/1-1028 YNPQFITKLL RNYRSHPTIL DIPNQLYYEG ELQACADVVD RERFCRWEGL 801 850 ENSTTRP00000009482/1-997 PRQDFPIIFH GVMGKDEREG NSPSFFNPEE AATVTSYLKQ LLARSSKKGK ENSP00000399797/1-1003 PRQGFPIIFH GVMGKDEREG NSPSFFNPEE AATVTSYLKL LLAPSSKKGK ENSBTAP00000018997/1-1003 PRQDFPIIFH GVMGKDEREG NSPSFFNPEE AATVTSYLKQ LLAPSSKKGK bmy_18847T0/1-1053 PRQDFPIIFH GVMGKDEREG NSPSFFNPEE AATVTSYLKQ LLAPSAKKGK BACU002698/1-1028 PRQDFPIIFH GVMGKDEREG NSPSFFNPEE AATVTSYLKQ LLAPSSKKGK 851 900 ENSTTRP00000009482/1-997 ARLSPRSVGV ISPYRKQVEK IRYCITKLDK ELRGLDDIKD LKVGSVEEFQ ENSP00000399797/1-1003 ARLSPRSVGV ISPYRKQVEK IRYCITKLDR ELRGLDDIKD LKVGSVEEFQ ENSBTAP00000018997/1-1003 ARLSPRSVGV ISPYRKQVEK IRYCITKLDK QLRGLDDIKD LKVGSVEEFQ bmy_18847T0/1-1053 ARLSPRSVGV ISPYRKQVEK IRYCITKLDK ELRGLDDIKD LKVGSVEEFQ BACU002698/1-1028 ARLSPRSVGV ISPYRKQVEK IRYCITKLDK ELRGLDDIKD LKVGSVEEFQ 901 950 ENSTTRP00000009482/1-997 GQERSVILIS TVRSSQSFVQ LDLDFNLGFL KNPK------ ---------- ENSP00000399797/1-1003 GQERSVILIS TVRSSQSFVQ LDLDFNLGFL KNPK------ ---------- ENSBTAP00000018997/1-1003 GQERSVILIS TVRSSQSFVQ LDLDFNLGFL KNPK------ ---------- bmy_18847T0/1-1053 GQERSVILIS TVRSSQSFVQ LDLDFNLGFL KNPKVQGLGG GRDSSFLRAL BACU002698/1-1028 GQERSVILIS TVRSSQSFVQ LDLDFNLGFL KNPKVQGLGG GRDSSFLRAL 951 1000 ENSTTRP00000009482/1-997 ---------- -RFNVAVTRA KALLIVVGNP LLLGHDPD-K VFLEFCKENG ENSP00000399797/1-1003 ---------- -RFNVAVTRA KALLIIVGNP LLLGHDPDWK VFLEFCKENG ENSBTAP00000018997/1-1003 ---------- -RFNVAVTRA KALLIVVGNP LLLGHDPDWK VFLEFCKENG bmy_18847T0/1-1053 PCRDPSTSSH QRFNVAVTRA KALLIVVGNP LLLGHDPDWK VFLEFCKENG BACU002698/1-1028 PCRDPSTSSH QRFNVAVTRA KALLIVVGNP LLLGHDPDWK VFLEFCKENG 1001 1050 ENSTTRP00000009482/1-997 GYTGCPFPAK LDLQQGQNLL QGLSKLSPST SGPKSHDC-- QAREGEGGLP ENSP00000399797/1-1003 GYTGCPFPAK LDLQQGQNLL QGLSKLSPST SGPHSHDYLP QEREGEGGLS ENSBTAP00000018997/1-1003 GYTGCPFPAK LDLQQGQNLL QGLSKLSPST SGLKSHDYLP QEREGEEGLS bmy_18847T0/1-1053 GYTGCPFPAK LDLQQGQNLL QDLSKLSPST SGPKSHDY-- QEREGEGGLP BACU002698/1-1028 GYTGCPFPAK LDLQQGQNLL QDLSKLSPST SGPKSHDY-- QEREGEGGLP 1051 1100 ENSTTRP00000009482/1-997 LQVEPEWRNE L ENSP00000399797/1-1003 LQVEPEWRNE L ENSBTAP00000018997/1-1003 LQVEPEWRNE L bmy_18847T0/1-1053 LQVEPEWRNE L BACU002698/1-1028 LQVEPEWRNE L