KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:23 2014 Check: 00 .. Name: ENSP00000197268/1-622 Len: 675 Check: 4179 Weight: 1.00 Name: ENSBTAP00000019045/1-623 Len: 675 Check: 1619 Weight: 1.00 Name: ENSTTRP00000012162/1-623 Len: 675 Check: 1642 Weight: 1.00 Name: bmy_01974T0/1-612 Len: 675 Check: 351 Weight: 1.00 Name: BACU016984/1-627 Len: 675 Check: 1909 Weight: 1.00 // 1 50 ENSP00000197268/1-622 ---------- ----MATVLS RALK------ ---------- ------LPGK ENSBTAP00000019045/1-623 ---------- -----KSPLT VWVS------ ---------- -----VFSGK ENSTTRP00000012162/1-623 ---------- ----MATVLS XXXX------ ---------- ------XXXK bmy_01974T0/1-612 MDGGSALRRR RMSGRASPLS PAEGDSLPPC FPSSIGFNHR VYISDSLPGK BACU016984/1-627 ---------- -MSGSASPLS PGQG------ ---------- --------GK 51 100 ENSP00000197268/1-622 KSPDLGEYDP LTQADSDESE DDLVLNL-QK NGGVKNGKSP LGEAPEPDSD ENSBTAP00000019045/1-623 KSPDLGEYDP LTQADSDESE DDLVLNLQQK NGGVKNGKSP LGEAPEPDSD ENSTTRP00000012162/1-623 KSPDLGEYDP LTQADSDESE DDLVLNLQQK NGGVKNGKSP LGEAPEPDSD bmy_01974T0/1-612 KSPDLGEYDP LTQADSDESE DDLVLNLQQK NGGVKNGKSP LGEAPEPDSD BACU016984/1-627 KSPDLGEYDP LTQADSDESE DDLVLNLQQK NGGVKNGKSP LGEAPEPDSD 101 150 ENSP00000197268/1-622 AEVAEAAKPH LSEVTTEGYP SEPLGGLEQK AASSLVSYVR TSVFLLTLGI ENSBTAP00000019045/1-623 AEVAGAGKPR LSEVTPEGYP LEPLGALEQK AASSVVSCVR TSVFLLMLVV ENSTTRP00000012162/1-623 AEVAGAGKPH LSEVTTEGYP LEPLGALEQK AASSIASYVR TSVFLLMLVI bmy_01974T0/1-612 AEVTGAGKPH LSEVTTEGYP LEPLGGLEQK TAPSIASYVR TSVFLLMLVI BACU016984/1-627 AEVTGAGKPH LSEVTTEGYP LEPLGGLERK AASSIASYVR TSVFLLMLVI 151 200 ENSP00000197268/1-622 SMILVLLCAF LIPCPPRDLH STWSRHLGSQ GGGDLSPLEL ADVNGDGLRD ENSBTAP00000019045/1-623 SMVLVLVCAF LIPCPPRDLH STWSRHLGPQ GGGDLSPLDL ADVNGDGLRD ENSTTRP00000012162/1-623 SMVLVLVCAF LIPCPPRGLH STWSRRLGPQ GGGDLSPLDL ADVNGDGLRD bmy_01974T0/1-612 SMALVLVCAF LIPCPPRDLH STWSRHLGPQ G--------- ---------- BACU016984/1-627 SMVLVLVCAF LIPCPPRDLH STWSRHLGPQ GGGDLSPLDL ADVNGDGLRD 201 250 ENSP00000197268/1-622 VLLSFVMSRN GSAVGVSRPA ANLVCLSGMN GSTLWSSLLP EEARDITCLE ENSBTAP00000019045/1-623 VLLSFVPAGN GSAAGVSRPP AVLVCLSGMN GSTLWSSPLP EEARDITCLD ENSTTRP00000012162/1-623 VLLSFVTSGN GSTAGVSRPP AVLVCLSGMN GSTLWSSPLP EEARDITCLD bmy_01974T0/1-612 ---------- ----GVSRPP AVLVCLSGMN GSTLWSSPLP EEARDIT--- BACU016984/1-627 VLLSFVTSGN GSTAGVSRPP AVLVCLSGMN GSTLWSNPLP EEARDITCLD 251 300 ENSP00000197268/1-622 LMPGSLAETI CLVTGTHKML SAFNATSGKA IWTLNPNYLS NGTLAAPVVV ENSBTAP00000019045/1-623 LTPGNMAKTV CLVTGTHKML SAFNGTSGKA MWTLNPNYLS NGTLAAPAVV ENSTTRP00000012162/1-623 LMPGRVAETV CLVTGTHKML SAFNATSGKA IWTLDPHYLP NGTLAAPGVV bmy_01974T0/1-612 ---------- ---------- -------WKA IWTLDPHYLS NGTLAAPGVV BACU016984/1-627 LMPGRVAETI CLVTGTHKML SAFNATSGKA IWTLDPHYLS NGTLAAPGVV 301 350 ENSP00000197268/1-622 LPDLDEDGVR DLVVLAIGEL QPDLCFLLVS GRTGNPVGRP VKYNIVGVGN ENSBTAP00000019045/1-623 LPDVDEDGVR DLAVLAIGEL QPDLCFLLVS GRTGSPVGRP VKYNIVGVGN ENSTTRP00000012162/1-623 LPDLDEDGIR DLAVLVIGEL QPDLCFLLVS GRTGSPVGRP VKYNIVGVGN bmy_01974T0/1-612 LPDLDEDGIR DLAVLAIGEL QPDLCFLLVS GRTGSPVGRP VKYNIVGVGN BACU016984/1-627 LPDLDEDGIG DLAVLAIGEL QPDLCFLLVS GRTGSPVGRP VKYNIVGVGN 351 400 ENSP00000197268/1-622 LIGPQVYITT NGAVYILFGF GNIQAVALRD IFVQAQNRDS SPPSLQIEEP ENSBTAP00000019045/1-623 LIGPQVYITT SGAAYILFGF GNIQAVALRD IFVQAQNRDS LPPSLQIEEP ENSTTRP00000012162/1-623 LIGPQVYITT NGAAYILFGF GNIQAVALRD IFVQAQNRDS LPPSLQIDEP bmy_01974T0/1-612 LIGPQVYITT SGAAYILFGF GNIQAVALRD IFVQAQNRDS LPPSLQIDEP BACU016984/1-627 LIGPQVYITT SGAAYILFGF GNIQAVALRD IFVQAQNRDS LPPSLQIDEP 401 450 ENSP00000197268/1-622 EWEKRRSINL SELIDVYSDG VELLQMVKAP DSNCSNLLIT TRQSLVLLRG ENSBTAP00000019045/1-623 EWEKRRSVNL SELIDVYSDG VELLQMVKAP DSNSSNLLIT TTQGLVLLRG ENSTTRP00000012162/1-623 DWERRRSINL SELVDIYSDG VELLQTVKVP GSNSSDLLIT TNRGLVLLQG bmy_01974T0/1-612 EWERRRSINL SELIDVYSDG VELLQVVKVP DSNSSKLLIT TRRGLVLLQG BACU016984/1-627 EWERRRSINL SELIDVYSDG VELLQVVKVP DSNSSNLLIT TRQGLVLLQG 451 500 ENSP00000197268/1-622 QNLTPYWALR LQGLRSQPTP GYFTDDQTLD FLLQIQDGVG MKKMMVVDGD ENSBTAP00000019045/1-623 QNLTPSWVLG LQGLHSQPTP GYFTDDETID FLLQIPNGVG MKKVMVVDGD ENSTTRP00000012162/1-623 QNLTPSWTLS LQGLRSQPTP GYFTDDETLD FLLQIPNGVG LKKVMVVDGD bmy_01974T0/1-612 QNLTPSWTLS LQGLRSQPTP GYFTDDETLD FLLQIPNGVG MKKVMVVDGA BACU016984/1-627 QNLTPSWTLN LQGLRSQPTP GYFTDDETLD FLLQIPNGVG MKKVMVVDGA 501 550 ENSP00000197268/1-622 SGSIVWSYRA PCHMKETPAT SAVTSDQKSV FLFWAEGLSA ASPNSDIILG ENSBTAP00000019045/1-623 SGLVTWSYSI PCHMKETPAT SAATVEQKSV FLFWAEGLSA ASPNPDVVLG ENSTTRP00000012162/1-623 SGMVAWSYSI PCHMEETPAT SAAAVDQKSV FLFWAEGLSA ASPNPDVVLG bmy_01974T0/1-612 SGLVAWSYSI PCHMEETPAT SAAAVDQKSV FLFWAEGLSA ASPNPDVVPG BACU016984/1-627 SGLVAWSYSV PCHMEETPAT SAAAVDQKSV FLFWAEGLSA ASPNPDVFPG 551 600 ENSP00000197268/1-622 TEPPSLHHLY LLHPAFPSIL LDLANTTGTV TASEVGINDL WKDAFYVTRT ENSBTAP00000019045/1-623 TEPPSLHHLY LLHPTFPSIL LDLANATGTV TASEVGINDL WKDAFYVTRT ENSTTRP00000012162/1-623 TEPPSLHHLY LLHPAFPSIL LDLANATGTV TASEVGINDL WKDAFYVTRT bmy_01974T0/1-612 TEPPSLHHLY LLHPAFPSIL LDLANATGTV TASEVGINDL WKDAFYVTRT BACU016984/1-627 TEPPSLHHLY LLHPAFPSIL LDLANATGTV TASEVGINDL WKDAFYVTRT 601 650 ENSP00000197268/1-622 TGPSSEGHPA ALVVSKLSLR WALMEGQMAQ LQESTPKIGR GELRRFLSRI ENSBTAP00000019045/1-623 TGPSSEGHPA PLVVSKLSLR WALMEGQMVQ LEETTPKIGR GELRRFLSRI ENSTTRP00000012162/1-623 TGPSSEGHPA PLVVSKLSLR WALMEGQVIQ LKETAPKIGR GELRRFLSRI bmy_01974T0/1-612 TGPSSEGHPA PLVVSKLSLR WALMEGQVVQ LKETTPKIGR GELRRFLSRI BACU016984/1-627 TGPSSEGHPA PLVVSKLSLR WALMEGQVVQ LRETTPKIGR GELRRFLSRI 651 700 ENSP00000197268/1-622 KFVEAPYEI- ---------- ----- ENSBTAP00000019045/1-623 KFVDSPYQI- ---------- ----- ENSTTRP00000012162/1-623 KFVDSPYQI- ---------- ----- bmy_01974T0/1-612 KFVDSPYQVK SLSRLLDSSV SEEVN BACU016984/1-627 KFVDSPYQVK SL-------- -----